Wall clock time and date at job start Wed Apr 1 2020 05:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42904 * 109.47273 * 2 1 4 4 C 1.42902 * 114.00151 * 179.97438 * 3 2 1 5 5 H 1.09002 * 112.84499 * 21.69117 * 4 3 2 6 6 C 1.53774 * 113.61453 * 250.49540 * 4 3 2 7 7 C 1.53785 * 87.08024 * 270.88299 * 6 4 3 8 8 H 1.09004 * 113.61548 * 219.93230 * 7 6 4 9 9 N 1.46507 * 113.61313 * 89.11602 * 7 6 4 10 10 C 1.46497 * 119.99771 * 314.20480 * 9 7 6 11 11 S 1.65604 * 119.99724 * 134.20726 * 9 7 6 12 12 O 1.42108 * 104.27429 * 206.06861 * 11 9 7 13 13 O 1.42099 * 104.27910 * 333.92421 * 11 9 7 14 14 C 1.81394 * 104.44786 * 89.99891 * 11 9 7 15 15 C 1.53007 * 109.47130 * 179.15903 * 14 11 9 16 16 C 1.50704 * 115.54551 * 66.27338 * 15 14 11 17 17 H 1.08004 * 119.99896 * 266.44320 * 16 15 14 18 18 C 1.37872 * 120.00215 * 86.44011 * 16 15 14 19 19 N 1.31519 * 119.99991 * 2.40743 * 18 16 15 20 20 Si 1.86803 * 120.00335 * 182.40613 * 18 16 15 21 21 H 1.48498 * 109.46974 * 89.99983 * 20 18 16 22 22 H 1.48494 * 109.47193 * 210.00465 * 20 18 16 23 23 H 1.48503 * 109.46580 * 329.99934 * 20 18 16 24 24 C 1.53001 * 117.50012 * 280.60652 * 15 14 11 25 25 C 1.52998 * 117.50264 * 211.94433 * 15 14 11 26 26 C 1.53773 * 87.08085 * 334.56717 * 7 6 4 27 27 C 1.53000 * 113.61705 * 270.88466 * 26 7 6 28 28 C 1.53004 * 113.61575 * 139.98054 * 26 7 6 29 29 H 1.08997 * 109.47507 * 300.00271 * 1 2 3 30 30 H 1.09003 * 109.46710 * 60.00477 * 1 2 3 31 31 H 1.09001 * 109.47366 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47075 * 119.99849 * 2 1 3 33 33 H 1.08997 * 109.47507 * 239.99729 * 2 1 3 34 34 H 1.09008 * 113.61476 * 25.42939 * 6 4 3 35 35 H 1.09000 * 113.61590 * 156.33529 * 6 4 3 36 36 H 1.09000 * 109.47300 * 56.75121 * 10 9 7 37 37 H 1.09003 * 109.46840 * 176.74252 * 10 9 7 38 38 H 1.08990 * 109.47451 * 296.74603 * 10 9 7 39 39 H 1.08993 * 109.47496 * 299.16443 * 14 11 9 40 40 H 1.09001 * 109.47008 * 59.16618 * 14 11 9 41 41 H 0.96999 * 120.00482 * 185.01786 * 19 18 16 42 42 H 1.08995 * 117.49457 * 359.97438 * 24 15 14 43 43 H 1.09000 * 117.49399 * 145.01703 * 24 15 14 44 44 H 1.09000 * 117.49523 * 214.98537 * 25 15 14 45 45 H 1.09001 * 117.49490 * 359.97438 * 25 15 14 46 46 H 1.08993 * 109.47455 * 177.00180 * 27 26 7 47 47 H 1.09006 * 109.46456 * 297.00309 * 27 26 7 48 48 H 1.08997 * 109.46980 * 56.99972 * 27 26 7 49 49 H 1.09005 * 109.47039 * 338.36534 * 28 26 7 50 50 H 1.09002 * 109.47088 * 98.36654 * 28 26 7 51 51 H 1.08995 * 109.47273 * 218.36895 * 28 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.9266 0.5630 -0.3703 6 6 4.0073 1.9779 1.3289 7 6 3.8420 3.3959 0.7571 8 1 4.6699 4.0630 0.9976 9 7 2.5325 3.9916 1.0346 10 6 1.3127 3.2064 0.8308 11 16 2.4314 5.5525 1.5785 12 8 1.2083 5.5933 2.3009 13 8 3.6744 5.7781 2.2291 14 6 2.3126 6.5510 0.0688 15 6 2.1916 8.0296 0.4434 16 6 3.4026 8.6332 1.1069 17 1 3.4705 8.6608 2.1844 18 6 4.4240 9.1500 0.3383 19 7 4.3204 9.1592 -0.9728 20 14 5.9549 9.8371 1.1591 21 1 6.9583 8.7544 1.3204 22 1 6.5250 10.9189 0.3167 23 1 5.5981 10.3843 2.4928 24 6 0.8174 8.5359 0.8865 25 6 1.3727 8.9289 -0.4848 26 6 3.9461 2.7602 -0.6391 27 6 5.3807 2.6596 -1.1614 28 6 2.9813 3.3645 -1.6613 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 3.3692 1.7770 2.1896 35 1 5.0460 1.6925 1.4949 36 1 1.3653 2.2929 1.4231 37 1 0.4475 3.7918 1.1421 38 1 1.2174 2.9502 -0.2243 39 1 3.2064 6.4017 -0.5369 40 1 1.4336 6.2472 -0.4996 41 1 5.0674 9.4551 -1.5163 42 1 -0.0004 7.8158 0.9106 43 1 0.7894 9.3059 1.6575 44 1 1.7098 9.9572 -0.6154 45 1 0.9206 8.4673 -1.3627 46 1 5.3814 2.1536 -2.1267 47 1 5.7968 3.6607 -1.2755 48 1 5.9860 2.0931 -0.4538 49 1 2.1556 3.8486 -1.1397 50 1 3.5090 4.1004 -2.2682 51 1 2.5919 2.5753 -2.3043 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590748018.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:07 Heat of formation + Delta-G solvation = -38.672072 kcal Electronic energy + Delta-G solvation = -31637.738531 eV Core-core repulsion = 27667.677483 eV Total energy + Delta-G solvation = -3970.061048 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.82606 -36.89191 -36.69482 -36.24489 -35.04178 -33.90857 -31.97901 -31.27579 -30.44602 -28.11518 -27.15059 -26.44868 -25.40369 -23.92666 -23.09808 -22.04595 -21.13960 -19.59057 -18.85523 -17.69185 -17.21437 -16.47948 -16.35273 -16.02574 -15.69738 -15.39235 -15.08528 -14.66789 -14.43902 -14.14553 -14.05755 -13.72331 -13.56637 -13.05391 -12.74321 -12.60609 -12.40172 -12.12272 -12.06390 -12.02004 -11.96160 -11.91993 -11.74122 -11.33613 -11.25886 -11.21306 -11.06681 -10.97344 -10.87906 -10.77226 -10.54745 -10.43779 -10.40816 -10.20290 -10.00259 -9.87141 -9.57077 -9.35873 -9.01276 -8.48834 -8.47465 -7.97639 -6.08714 -4.19207 1.10855 3.33869 3.38607 3.39775 3.45187 3.49137 4.40618 4.41598 4.52191 4.67032 4.84590 4.88250 4.92016 4.98308 5.08631 5.18956 5.20543 5.23033 5.25749 5.27416 5.31515 5.51342 5.63034 5.68815 5.70068 5.74503 5.79881 5.87154 5.93461 5.96366 6.01916 6.04068 6.05335 6.12752 6.15261 6.26758 6.32260 6.41519 6.46716 6.56956 6.64838 6.67684 6.77290 7.02787 7.08188 7.19999 7.29384 7.50230 7.84697 8.25661 8.86589 9.51282 10.98810 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014869 B = 0.004243 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.668837 B = 6598.125223 C = 7301.250298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.036 3.964 3 O -0.335 6.335 4 C 0.066 3.934 5 H 0.070 0.930 6 C -0.168 4.168 7 C 0.142 3.858 8 H 0.113 0.887 9 N -0.988 5.988 10 C 0.080 3.920 11 S 2.603 3.397 12 O -0.973 6.973 13 O -0.949 6.949 14 C -0.552 4.552 15 C 0.039 3.961 16 C -0.507 4.507 17 H 0.068 0.932 18 C 0.080 3.920 19 N -0.876 5.876 20 Si 0.890 3.110 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.270 1.270 24 C -0.214 4.214 25 C -0.132 4.132 26 C -0.099 4.099 27 C -0.126 4.126 28 C -0.141 4.141 29 H 0.064 0.936 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.129 0.871 40 H 0.098 0.902 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.064 0.936 46 H 0.059 0.941 47 H 0.069 0.931 48 H 0.058 0.942 49 H 0.075 0.925 50 H 0.055 0.945 51 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.996 -18.830 -2.777 19.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.040 4.040 3 O -0.254 6.254 4 C 0.008 3.992 5 H 0.088 0.912 6 C -0.207 4.207 7 C 0.034 3.966 8 H 0.131 0.869 9 N -0.822 5.822 10 C -0.063 4.063 11 S 2.702 3.298 12 O -0.963 6.963 13 O -0.939 6.939 14 C -0.685 4.685 15 C 0.036 3.964 16 C -0.545 4.545 17 H 0.086 0.914 18 C -0.124 4.124 19 N -0.512 5.512 20 Si 0.717 3.283 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.195 1.195 24 C -0.251 4.251 25 C -0.171 4.171 26 C -0.101 4.101 27 C -0.184 4.184 28 C -0.198 4.198 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.105 0.895 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.107 0.893 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.077 0.923 49 H 0.094 0.906 50 H 0.074 0.926 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.073 -18.335 -1.999 18.698 hybrid contribution 1.022 -0.013 -0.532 1.153 sum -2.051 -18.348 -2.531 18.635 Atomic orbital electron populations 1.21749 0.93878 1.01979 1.03224 1.22588 0.95644 0.86082 0.99710 1.88947 1.19091 1.23337 1.94039 1.23141 0.82490 0.97204 0.96378 0.91169 1.23796 1.01641 0.97052 0.98228 1.21668 0.85658 0.95055 0.94236 0.86937 1.57498 1.10494 1.30607 1.83583 1.22144 0.84748 0.95723 1.03717 1.05321 0.74118 0.72665 0.77724 1.93484 1.47265 1.85727 1.69873 1.93520 1.44176 1.83758 1.72426 1.30042 1.09036 1.10637 1.18805 1.18322 0.90534 0.86814 1.00711 1.20536 1.01473 1.39413 0.93050 0.91420 1.24934 0.98293 0.94424 0.94792 1.70021 1.30801 1.46528 1.03812 0.86606 0.83254 0.78790 0.79679 1.20052 1.21251 1.19473 1.23236 0.97859 1.04377 0.99646 1.22497 1.02715 1.01141 0.90769 1.22549 0.96277 0.95304 0.95986 1.21565 0.93251 1.02912 1.00664 1.21842 0.99488 1.00436 0.98047 0.91694 0.91869 0.91655 0.93648 0.93824 0.90305 0.88644 0.90315 0.91493 0.89494 0.85273 0.88392 0.92905 0.90756 0.89607 0.89254 0.91712 0.92187 0.91166 0.92280 0.90595 0.92623 0.92752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.04 0.30 6.51 37.16 0.24 0.54 16 3 O -0.33 -3.52 3.40 -35.23 -0.12 -3.64 16 4 C 0.07 0.69 3.78 -25.92 -0.10 0.59 16 5 H 0.07 0.63 7.85 -51.93 -0.41 0.22 16 6 C -0.17 -1.96 6.98 -25.92 -0.18 -2.14 16 7 C 0.14 2.07 3.91 -67.12 -0.26 1.81 16 8 H 0.11 1.82 7.05 -51.93 -0.37 1.45 16 9 N -0.99 -16.07 2.45 -113.74 -0.28 -16.34 16 10 C 0.08 1.12 7.63 59.85 0.46 1.58 16 11 S 2.60 54.45 5.24 -107.50 -0.56 53.89 16 12 O -0.97 -21.94 16.54 -57.54 -0.95 -22.89 16 13 O -0.95 -22.91 16.08 -57.54 -0.93 -23.84 16 14 C -0.55 -11.80 6.03 37.16 0.22 -11.58 16 15 C 0.04 0.95 1.41 -155.65 -0.22 0.73 16 16 C -0.51 -14.05 8.03 -34.44 -0.28 -14.33 16 17 H 0.07 1.93 7.81 -52.48 -0.41 1.52 16 18 C 0.08 2.19 5.42 -17.82 -0.10 2.09 16 19 N -0.88 -24.16 12.63 55.43 0.70 -23.46 16 20 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 21 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 C -0.21 -4.83 9.96 -26.69 -0.27 -5.10 16 25 C -0.13 -3.09 9.11 -26.69 -0.24 -3.33 16 26 C -0.10 -1.18 1.33 -153.70 -0.20 -1.39 16 27 C -0.13 -1.31 8.98 37.16 0.33 -0.97 16 28 C -0.14 -1.78 8.21 37.16 0.30 -1.47 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.97 7.65 -51.92 -0.40 0.57 16 35 H 0.10 0.94 7.63 -51.93 -0.40 0.54 16 36 H 0.08 1.03 5.63 -51.93 -0.29 0.74 16 37 H 0.07 0.99 6.82 -51.93 -0.35 0.63 16 38 H 0.09 1.10 3.86 -51.97 -0.20 0.90 16 39 H 0.13 2.83 8.14 -51.93 -0.42 2.41 16 40 H 0.10 1.81 8.08 -51.92 -0.42 1.39 16 41 H 0.26 6.87 8.32 -40.82 -0.34 6.54 16 42 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 43 H 0.09 1.92 8.14 -51.93 -0.42 1.49 16 44 H 0.09 2.22 8.14 -51.93 -0.42 1.80 16 45 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.53 7.32 -51.93 -0.38 0.15 16 49 H 0.08 1.03 4.45 -51.93 -0.23 0.79 16 50 H 0.05 0.73 8.00 -51.93 -0.42 0.31 16 51 H 0.05 0.61 8.13 -51.93 -0.42 0.19 16 LS Contribution 401.09 15.07 6.04 6.04 Total: -1.00 -32.04 401.09 -9.92 -41.96 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.90 Total: 5.41 kcal Atomic # 6 Polarization: -33.79 SS G_CDS: 0.10 Total: -33.69 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: 0.42 Total: -39.80 kcal Atomic # 8 Polarization: -48.38 SS G_CDS: -2.00 Total: -50.37 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 54.45 SS G_CDS: -0.56 Total: 53.89 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.04 -9.92 -41.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590748018.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.286 kcal (2) G-P(sol) polarization free energy of solvation -32.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds