Wall clock time and date at job start Wed Apr 1 2020 05:42:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46866 * 2 1 4 4 C 1.42904 * 113.99915 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.85188 * 338.30678 * 4 3 2 6 6 C 1.53785 * 113.61532 * 109.50110 * 4 3 2 7 7 C 1.53788 * 87.07970 * 89.11492 * 6 4 3 8 8 H 1.08999 * 113.61365 * 270.80057 * 7 6 4 9 9 N 1.46505 * 113.60995 * 139.97996 * 7 6 4 10 10 C 1.46493 * 120.00056 * 351.49112 * 9 7 6 11 11 S 1.65598 * 119.99613 * 171.49412 * 9 7 6 12 12 O 1.42094 * 104.27966 * 153.93110 * 11 9 7 13 13 O 1.42096 * 104.27948 * 26.06855 * 11 9 7 14 14 C 1.81405 * 104.44737 * 269.99947 * 11 9 7 15 15 C 1.52996 * 109.47063 * 173.13031 * 14 11 9 16 16 C 1.50699 * 115.55313 * 39.47843 * 15 14 11 17 17 H 1.07997 * 119.99590 * 265.56139 * 16 15 14 18 18 C 1.37876 * 120.00261 * 85.55814 * 16 15 14 19 19 N 1.31514 * 119.99773 * 1.67485 * 18 16 15 20 20 Si 1.86795 * 119.99980 * 181.67649 * 18 16 15 21 21 H 1.48497 * 109.47584 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47026 * 120.00280 * 20 18 16 23 23 H 1.48507 * 109.46963 * 239.99963 * 20 18 16 24 24 C 1.53005 * 117.49795 * 253.76574 * 15 14 11 25 25 C 1.52999 * 60.00230 * 252.51218 * 24 15 14 26 26 C 1.53780 * 113.61605 * 207.00018 * 4 3 2 27 27 C 1.53000 * 113.61755 * 156.33534 * 26 4 3 28 28 C 1.53003 * 113.61416 * 25.43007 * 26 4 3 29 29 H 1.09005 * 109.47112 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47341 * 299.99963 * 1 2 3 31 31 H 1.08998 * 109.46971 * 59.99899 * 1 2 3 32 32 H 1.08996 * 109.46897 * 239.99955 * 2 1 3 33 33 H 1.08992 * 109.47047 * 119.99645 * 2 1 3 34 34 H 1.09001 * 113.61437 * 334.57220 * 6 4 3 35 35 H 1.08996 * 113.61638 * 203.66418 * 6 4 3 36 36 H 1.09006 * 109.47319 * 274.39479 * 10 9 7 37 37 H 1.08996 * 109.47618 * 34.40041 * 10 9 7 38 38 H 1.09004 * 109.47196 * 154.39922 * 10 9 7 39 39 H 1.09004 * 109.47162 * 53.12574 * 14 11 9 40 40 H 1.09005 * 109.46912 * 293.12995 * 14 11 9 41 41 H 0.96994 * 119.99969 * 185.01034 * 19 18 16 42 42 H 1.09005 * 117.49688 * 0.02562 * 24 15 14 43 43 H 1.09000 * 117.49711 * 145.01906 * 24 15 14 44 44 H 1.08994 * 117.49699 * 252.50812 * 25 24 15 45 45 H 1.08995 * 117.49784 * 107.48907 * 25 24 15 46 46 H 1.08994 * 109.47539 * 161.49931 * 27 26 4 47 47 H 1.09005 * 109.46649 * 281.50482 * 27 26 4 48 48 H 1.09003 * 109.46626 * 41.49884 * 27 26 4 49 49 H 1.09001 * 109.47400 * 322.50526 * 28 26 4 50 50 H 1.09006 * 109.46833 * 82.50029 * 28 26 4 51 51 H 1.08996 * 109.47088 * 202.50386 * 28 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9267 0.5632 0.3703 6 6 4.0073 1.9779 -1.3290 7 6 3.8418 3.3960 -0.7573 8 1 2.8681 3.8396 -0.9650 9 7 4.9556 4.2919 -1.0789 10 6 6.1646 3.7594 -1.7119 11 16 4.8477 5.9063 -0.7266 12 8 6.1975 6.3223 -0.5717 13 8 3.9329 5.9678 0.3590 14 6 4.1203 6.6466 -2.2145 15 6 3.8095 8.1212 -1.9507 16 6 4.8376 8.8673 -1.1399 17 1 4.7183 8.9602 -0.0706 18 6 5.9305 9.4312 -1.7633 19 7 6.0587 9.3464 -3.0694 20 14 7.2289 10.3156 -0.7528 21 1 6.8538 10.2710 0.6834 22 1 8.5423 9.6489 -0.9417 23 1 7.3232 11.7297 -1.1966 24 6 2.3419 8.5112 -1.7625 25 6 3.0770 8.8961 -3.0480 26 6 3.9461 2.7602 0.6391 27 6 5.3807 2.6598 1.1613 28 6 2.9812 3.3647 1.6612 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 3.3693 1.7770 -2.1896 35 1 5.0460 1.6925 -1.4950 36 1 6.8400 3.3809 -0.9446 37 1 5.8937 2.9495 -2.3892 38 1 6.6600 4.5518 -2.2730 39 1 3.1999 6.1210 -2.4690 40 1 4.8253 6.5663 -3.0420 41 1 6.8617 9.6785 -3.5005 42 1 1.5980 7.7170 -1.8263 43 1 2.1199 9.3074 -1.0520 44 1 3.3384 9.9456 -3.1832 45 1 2.8166 8.3553 -3.9578 46 1 5.7907 3.6612 1.2923 47 1 5.3833 2.1379 2.1183 48 1 5.9902 2.1085 0.4452 49 1 1.9558 3.2286 1.3176 50 1 3.1114 2.8670 2.6222 51 1 3.1891 4.4289 1.7719 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590748019.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:13 Heat of formation + Delta-G solvation = -67.964493 kcal Electronic energy + Delta-G solvation = -31065.508445 eV Core-core repulsion = 27094.177183 eV Total energy + Delta-G solvation = -3971.331263 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.48597 -37.13927 -36.67342 -36.07571 -34.85069 -33.94831 -32.01136 -31.25784 -30.12309 -28.15164 -27.51821 -26.41463 -25.44422 -23.77299 -23.01667 -21.97189 -21.13235 -19.52035 -18.80065 -18.09344 -17.11465 -16.49510 -16.40546 -15.80942 -15.59940 -15.32331 -14.92458 -14.73956 -14.38929 -14.17766 -13.64676 -13.35043 -13.31917 -13.01163 -12.95302 -12.79937 -12.47038 -12.28491 -12.22491 -12.09071 -11.84130 -11.72575 -11.71019 -11.48207 -11.39664 -11.05499 -10.97026 -10.94576 -10.85610 -10.77691 -10.66534 -10.56427 -10.46349 -10.28129 -10.02848 -9.98475 -9.58991 -9.44376 -9.00578 -8.56317 -8.46318 -8.02126 -6.13131 -4.28659 1.21700 3.33959 3.40162 3.42762 3.48857 3.53097 4.43213 4.44702 4.49009 4.63711 4.80178 4.85837 4.89236 5.00629 5.05237 5.14644 5.16091 5.18164 5.23326 5.31500 5.38246 5.49550 5.53688 5.64362 5.69219 5.73768 5.74843 5.77894 5.89353 5.91110 5.94645 5.99515 6.04097 6.10972 6.21365 6.30559 6.34689 6.39860 6.46374 6.55031 6.67096 6.75288 6.85211 6.98948 7.05225 7.16523 7.23481 7.48566 7.80712 8.22227 8.81314 9.48923 10.94325 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017789 B = 0.003640 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.654512 B = 7689.811397 C = 8285.229243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.360 6.360 4 C 0.072 3.928 5 H 0.075 0.925 6 C -0.164 4.164 7 C 0.150 3.850 8 H 0.107 0.893 9 N -1.006 6.006 10 C 0.090 3.910 11 S 2.622 3.378 12 O -0.944 6.944 13 O -0.962 6.962 14 C -0.564 4.564 15 C 0.048 3.952 16 C -0.538 4.538 17 H 0.069 0.931 18 C 0.095 3.905 19 N -0.869 5.869 20 Si 0.892 3.108 21 H -0.267 1.267 22 H -0.276 1.276 23 H -0.284 1.284 24 C -0.205 4.205 25 C -0.140 4.140 26 C -0.090 4.090 27 C -0.122 4.122 28 C -0.143 4.143 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.047 0.953 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.053 0.947 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.263 0.737 42 H 0.068 0.932 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.064 0.936 50 H 0.044 0.956 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -19.643 2.085 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.279 6.279 4 C 0.013 3.987 5 H 0.093 0.907 6 C -0.203 4.203 7 C 0.043 3.957 8 H 0.125 0.875 9 N -0.841 5.841 10 C -0.055 4.055 11 S 2.720 3.280 12 O -0.935 6.935 13 O -0.953 6.953 14 C -0.695 4.695 15 C 0.046 3.954 16 C -0.576 4.576 17 H 0.087 0.913 18 C -0.112 4.112 19 N -0.503 5.503 20 Si 0.719 3.281 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.210 1.210 24 C -0.242 4.242 25 C -0.178 4.178 26 C -0.092 4.092 27 C -0.179 4.179 28 C -0.200 4.200 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.082 0.918 46 H 0.084 0.916 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.083 0.917 50 H 0.063 0.937 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.980 -19.009 2.721 19.838 hybrid contribution 0.643 0.063 -0.521 0.830 sum -4.337 -18.946 2.200 19.560 Atomic orbital electron populations 1.21745 0.93807 1.02041 1.03321 1.22495 0.95513 0.84115 0.99826 1.87910 1.19679 1.25836 1.94467 1.23032 0.81419 0.97834 0.96417 0.90747 1.23839 1.02156 0.96178 0.98145 1.22292 0.89745 0.89198 0.94478 0.87535 1.58016 1.22724 1.26605 1.76767 1.21484 0.86164 1.00408 0.97458 1.04783 0.75128 0.71022 0.77060 1.93517 1.34623 1.79794 1.85527 1.93447 1.66740 1.85128 1.49937 1.30051 1.10449 1.08632 1.20417 1.18185 0.90037 0.87236 0.99992 1.20662 1.06479 1.36677 0.93766 0.91270 1.24912 0.97558 0.94037 0.94674 1.69998 1.26908 1.45022 1.08391 0.86514 0.81898 0.78631 0.81079 1.19151 1.20197 1.20981 1.23120 0.96022 1.03156 1.01875 1.22497 1.03648 1.01063 0.90631 1.22527 0.96368 0.94074 0.96237 1.21527 0.93691 1.02570 1.00113 1.21733 0.98780 1.02885 0.96607 0.91323 0.91750 0.91785 0.93559 0.93512 0.90392 0.88190 0.92798 0.91583 0.90714 0.88687 0.86042 0.92692 0.91358 0.89758 0.89400 0.91822 0.91612 0.92593 0.92440 0.91741 0.93702 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.28 37.16 0.38 -0.75 16 2 C 0.06 0.49 6.51 37.16 0.24 0.73 16 3 O -0.36 -4.16 8.81 -35.23 -0.31 -4.47 16 4 C 0.07 0.79 3.79 -25.92 -0.10 0.69 16 5 H 0.07 0.69 7.85 -51.93 -0.41 0.28 16 6 C -0.16 -1.77 6.43 -25.91 -0.17 -1.93 16 7 C 0.15 2.12 3.18 -67.11 -0.21 1.91 16 8 H 0.11 1.59 8.10 -51.93 -0.42 1.17 16 9 N -1.01 -16.08 2.50 -113.73 -0.28 -16.36 16 10 C 0.09 1.21 8.84 59.84 0.53 1.74 16 11 S 2.62 55.86 4.51 -107.50 -0.49 55.38 16 12 O -0.94 -23.41 16.18 -57.54 -0.93 -24.34 16 13 O -0.96 -21.80 15.16 -57.54 -0.87 -22.68 16 14 C -0.56 -12.20 6.29 37.16 0.23 -11.96 16 15 C 0.05 1.19 1.72 -155.66 -0.27 0.92 16 16 C -0.54 -15.06 6.92 -34.44 -0.24 -15.30 16 17 H 0.07 1.99 7.81 -52.49 -0.41 1.58 16 18 C 0.09 2.66 5.42 -17.82 -0.10 2.56 16 19 N -0.87 -24.41 12.69 55.43 0.70 -23.71 16 20 Si 0.89 22.33 29.54 -169.99 -5.02 17.31 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 C -0.20 -4.57 9.88 -26.73 -0.26 -4.84 16 25 C -0.14 -3.28 9.21 -26.73 -0.25 -3.53 16 26 C -0.09 -1.20 1.35 -153.69 -0.21 -1.41 16 27 C -0.12 -1.54 7.70 37.16 0.29 -1.26 16 28 C -0.14 -2.11 8.97 37.16 0.33 -1.77 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.10 0.93 5.52 -51.93 -0.29 0.64 16 36 H 0.05 0.67 6.77 -51.93 -0.35 0.31 16 37 H 0.07 0.67 6.10 -51.93 -0.32 0.36 16 38 H 0.07 1.08 7.63 -51.93 -0.40 0.68 16 39 H 0.09 1.75 7.94 -51.92 -0.41 1.34 16 40 H 0.12 2.65 8.14 -51.92 -0.42 2.23 16 41 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 42 H 0.07 1.36 8.08 -51.93 -0.42 0.94 16 43 H 0.08 1.87 8.14 -51.93 -0.42 1.44 16 44 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.06 0.99 7.92 -51.93 -0.41 0.58 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.06 0.62 6.16 -51.93 -0.32 0.30 16 49 H 0.06 0.94 6.96 -51.93 -0.36 0.58 16 50 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.09 1.53 6.01 -51.93 -0.31 1.22 16 LS Contribution 406.11 15.07 6.12 6.12 Total: -1.00 -32.48 406.11 -9.91 -42.39 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -9.04 Total: 4.55 kcal Atomic # 6 Polarization: -34.41 SS G_CDS: 0.21 Total: -34.20 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 0.42 Total: -40.07 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -2.11 Total: -51.48 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 55.86 SS G_CDS: -0.49 Total: 55.38 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -32.48 -9.91 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590748019.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.575 kcal (2) G-P(sol) polarization free energy of solvation -32.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds