Wall clock time and date at job start Wed Apr 1 2020 03:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46896 * 109.47119 * 2 1 4 4 C 1.46901 * 110.99949 * 66.04576 * 3 2 1 5 5 C 1.53237 * 109.34228 * 187.25676 * 4 3 2 6 6 N 1.47089 * 108.51932 * 306.17119 * 5 4 3 7 7 C 1.34775 * 120.87792 * 231.16626 * 6 5 4 8 8 O 1.21354 * 120.00032 * 171.84797 * 7 6 5 9 9 C 1.49358 * 120.00269 * 351.84268 * 7 6 5 10 10 O 1.21375 * 119.99705 * 353.39760 * 9 7 6 11 11 N 1.34776 * 120.00320 * 173.39417 * 9 7 6 12 12 C 1.39735 * 120.00505 * 183.57397 * 11 9 7 13 13 C 1.39348 * 119.95515 * 324.01484 * 12 11 9 14 14 C 1.38464 * 120.42508 * 179.71684 * 13 12 11 15 15 C 1.37688 * 120.32998 * 0.55123 * 14 13 12 16 16 C 1.40751 * 119.89404 * 359.72370 * 15 14 13 17 17 C 1.41412 * 120.20744 * 179.97438 * 16 15 14 18 18 H 1.08003 * 119.99755 * 31.49955 * 17 16 15 19 19 C 1.39934 * 120.00309 * 211.50319 * 17 16 15 20 20 N 1.30835 * 119.99656 * 7.58556 * 19 17 16 21 21 Si 1.86797 * 120.00134 * 187.59250 * 19 17 16 22 22 H 1.48495 * 109.47115 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47162 * 119.99905 * 21 19 17 24 24 H 1.48505 * 109.46843 * 239.99617 * 21 19 17 25 25 C 1.38301 * 119.95304 * 144.27776 * 12 11 9 26 26 C 1.47078 * 118.23726 * 51.18106 * 6 5 4 27 27 C 1.47330 * 110.93629 * 190.42174 * 3 2 1 28 28 H 1.09003 * 109.46259 * 292.63202 * 27 3 2 29 29 C 1.52999 * 109.74810 * 52.84895 * 27 3 2 30 30 H 1.08995 * 109.46908 * 299.99812 * 1 2 3 31 31 H 1.08997 * 109.47114 * 59.99973 * 1 2 3 32 32 H 1.09005 * 109.46416 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47356 * 240.00223 * 2 1 3 34 34 H 1.08997 * 109.47114 * 120.00027 * 2 1 3 35 35 H 1.09002 * 109.49612 * 67.29699 * 4 3 2 36 36 H 1.09007 * 109.49335 * 307.21433 * 4 3 2 37 37 H 1.08997 * 109.63401 * 186.46255 * 5 4 3 38 38 H 1.09001 * 109.79266 * 65.96786 * 5 4 3 39 39 H 0.97005 * 119.99729 * 3.58408 * 11 9 7 40 40 H 1.08005 * 119.78148 * 359.97438 * 13 12 11 41 41 H 1.08004 * 119.83797 * 180.29347 * 14 13 12 42 42 H 1.08001 * 120.05808 * 179.70129 * 15 14 13 43 43 H 0.96998 * 119.99859 * 180.02562 * 20 19 17 44 44 H 1.07994 * 120.16530 * 0.02843 * 25 12 11 45 45 H 1.08996 * 109.62706 * 68.52845 * 26 6 5 46 46 H 1.09001 * 109.62439 * 188.91396 * 26 6 5 47 47 H 1.09002 * 109.47055 * 179.74542 * 29 27 3 48 48 H 1.09002 * 109.47487 * 299.74755 * 29 27 3 49 49 H 1.09002 * 109.46934 * 59.74568 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6702 2.0669 1.2533 5 6 2.0352 3.5510 1.1425 6 7 3.4489 3.6564 0.7503 7 6 4.3028 4.4352 1.4437 8 8 5.4913 4.3980 1.2013 9 6 3.7864 5.3441 2.5105 10 8 2.5903 5.4715 2.6726 11 7 4.6486 6.0227 3.2933 12 6 4.1678 6.8147 4.3393 13 6 2.9737 7.5169 4.1883 14 6 2.4854 8.3000 5.2205 15 6 3.1809 8.4025 6.4044 16 6 4.3914 7.7037 6.5696 17 6 5.1114 7.8047 7.7825 18 1 4.5835 7.9512 8.7133 19 6 6.5079 7.7149 7.7769 20 7 7.1569 7.6869 6.6412 21 14 7.4452 7.6348 9.3907 22 1 6.4859 7.6833 10.5232 23 1 8.2195 6.3692 9.4511 24 1 8.3754 8.7890 9.4806 25 6 4.8807 6.9051 5.5210 26 6 3.9058 2.8897 -0.4187 27 6 3.4711 1.4302 -0.2489 28 1 3.9986 0.9896 0.5971 29 6 3.8020 0.6476 -1.5213 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.2226 1.6172 2.0784 36 1 0.5999 1.9681 1.4349 37 1 1.8852 4.0380 2.1060 38 1 1.4097 4.0297 0.3890 39 1 5.6029 5.9613 3.1304 40 1 2.4234 7.4464 3.2616 41 1 1.5564 8.8364 5.0949 42 1 2.7984 9.0184 7.2049 43 1 8.1249 7.6243 6.6373 44 1 5.8087 6.3651 5.6375 45 1 3.4598 3.3017 -1.3238 46 1 4.9923 2.9424 -0.4891 47 1 4.8760 0.6878 -1.7036 48 1 3.4927 -0.3905 -1.4002 49 1 3.2733 1.0881 -2.3666 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590782706.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:56 Heat of formation + Delta-G solvation = -19.166919 kcal Electronic energy + Delta-G solvation = -30339.295262 eV Core-core repulsion = 26266.928820 eV Total energy + Delta-G solvation = -4072.366441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.96046 -39.46303 -38.29438 -37.25172 -35.49367 -34.27071 -33.30508 -33.14344 -30.87900 -29.62135 -28.82441 -27.71627 -27.26822 -25.30704 -24.25144 -22.99448 -22.20085 -21.35640 -20.79036 -20.06150 -19.46443 -17.66463 -17.50032 -16.93505 -16.07482 -16.01502 -15.75281 -15.33681 -15.30163 -14.96122 -14.81595 -14.68622 -14.43102 -14.15135 -13.86386 -13.40834 -13.09706 -12.86783 -12.62626 -12.59833 -12.41781 -12.35973 -12.24099 -12.09969 -11.75358 -11.71549 -11.36362 -11.29623 -11.18554 -11.13300 -11.08599 -10.84563 -10.73969 -10.58290 -9.96067 -9.82119 -9.46830 -9.22398 -9.00128 -8.79061 -8.52718 -7.38808 -7.13584 -6.68831 -4.43668 1.49663 2.40010 2.72441 2.85754 3.07587 3.12511 3.16854 3.40819 3.53260 3.72671 3.93846 4.43817 4.56975 4.61758 4.65332 4.70060 4.86390 4.93829 5.06495 5.17104 5.18436 5.24460 5.32507 5.39727 5.43334 5.53989 5.56639 5.61951 5.72572 5.74660 5.87304 5.91348 6.00033 6.17955 6.20699 6.54400 6.57757 6.71205 6.74272 6.79543 6.90279 7.01179 7.08740 7.21688 7.45756 7.49282 7.74696 7.84025 7.97062 8.04478 8.21105 8.36245 8.59868 8.84834 8.88314 10.22986 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016810 B = 0.002359 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.274856 B =11864.735430 C =12357.390070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 N -0.535 5.535 4 C 0.038 3.962 5 C 0.079 3.921 6 N -0.587 5.587 7 C 0.511 3.489 8 O -0.524 6.524 9 C 0.500 3.500 10 O -0.502 6.502 11 N -0.624 5.624 12 C 0.129 3.871 13 C -0.217 4.217 14 C -0.091 4.091 15 C -0.216 4.216 16 C 0.118 3.882 17 C -0.464 4.464 18 H 0.079 0.921 19 C 0.072 3.928 20 N -0.809 5.809 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.163 4.163 26 C 0.119 3.881 27 C 0.067 3.933 28 H 0.047 0.953 29 C -0.147 4.147 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.037 0.963 36 H 0.093 0.907 37 H 0.144 0.856 38 H 0.076 0.924 39 H 0.415 0.585 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.096 0.904 43 H 0.279 0.721 44 H 0.126 0.874 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.915 -13.709 -13.748 20.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.084 4.084 3 N -0.261 5.261 4 C -0.091 4.091 5 C -0.043 4.043 6 N -0.321 5.321 7 C 0.294 3.706 8 O -0.399 6.399 9 C 0.282 3.718 10 O -0.380 6.380 11 N -0.268 5.268 12 C 0.038 3.962 13 C -0.238 4.238 14 C -0.110 4.110 15 C -0.236 4.236 16 C 0.115 3.885 17 C -0.495 4.495 18 H 0.097 0.903 19 C -0.143 4.143 20 N -0.435 5.435 21 Si 0.737 3.263 22 H -0.185 1.185 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.185 4.185 26 C -0.004 4.004 27 C -0.042 4.042 28 H 0.065 0.935 29 C -0.205 4.205 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.099 0.901 34 H 0.049 0.951 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.161 0.839 38 H 0.094 0.906 39 H 0.252 0.748 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.089 0.911 44 H 0.143 0.857 45 H 0.097 0.903 46 H 0.115 0.885 47 H 0.083 0.917 48 H 0.081 0.919 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.082 -13.409 -14.238 20.801 hybrid contribution 1.392 -0.533 1.158 1.887 sum -5.690 -13.942 -13.080 19.946 Atomic orbital electron populations 1.21807 0.94734 1.01490 1.02638 1.22193 0.96192 0.89005 1.01014 1.62194 1.13167 1.15831 1.34874 1.22623 1.01799 0.94619 0.90017 1.22949 0.79544 0.95653 1.06128 1.47960 1.10859 1.44192 1.29091 1.20273 0.86061 0.81401 0.82828 1.90741 1.15229 1.66752 1.67224 1.19969 0.86878 0.81966 0.83022 1.90504 1.14763 1.63386 1.69309 1.43201 1.10722 1.43676 1.29217 1.17672 0.96566 0.94590 0.87384 1.20439 0.98546 1.04568 1.00226 1.20452 0.98150 0.98465 0.93923 1.21169 0.99800 1.05021 0.97564 1.17396 0.90516 0.88007 0.92619 1.19545 0.91087 1.44568 0.94296 0.90330 1.25865 0.98295 0.92363 0.97800 1.69763 1.09509 1.37451 1.26820 0.86202 0.79543 0.78479 0.82112 1.18535 1.19900 1.20019 1.21196 1.02086 1.03312 0.91858 1.21841 1.01286 0.89544 0.87717 1.22047 0.88168 0.95704 0.98247 0.93543 1.21884 1.01855 0.99837 0.96882 0.92526 0.91784 0.92385 0.90085 0.95066 0.94463 0.88932 0.83890 0.90563 0.74819 0.87461 0.88748 0.88604 0.91052 0.85651 0.90284 0.88518 0.91651 0.91910 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.85 37.16 0.37 -0.65 16 2 C 0.04 0.34 5.39 -3.82 -0.02 0.32 16 3 N -0.53 -5.04 4.48 -226.01 -1.01 -6.05 16 4 C 0.04 0.39 5.47 -3.70 -0.02 0.37 16 5 C 0.08 0.97 6.10 -3.60 -0.02 0.95 16 6 N -0.59 -7.89 3.01 -173.01 -0.52 -8.41 16 7 C 0.51 8.31 7.74 -11.63 -0.09 8.22 16 8 O -0.52 -9.31 15.95 5.49 0.09 -9.22 16 9 C 0.50 9.10 7.57 -11.63 -0.09 9.01 16 10 O -0.50 -9.54 10.71 5.48 0.06 -9.48 16 11 N -0.62 -12.32 5.32 -10.34 -0.05 -12.37 16 12 C 0.13 2.97 6.26 -83.82 -0.52 2.44 16 13 C -0.22 -4.93 8.69 -39.09 -0.34 -5.27 16 14 C -0.09 -2.04 10.01 -39.70 -0.40 -2.43 16 15 C -0.22 -5.18 9.79 -38.83 -0.38 -5.56 16 16 C 0.12 3.06 5.53 -106.85 -0.59 2.47 16 17 C -0.46 -12.06 9.05 -37.74 -0.34 -12.40 16 18 H 0.08 1.97 7.86 -52.48 -0.41 1.55 16 19 C 0.07 1.79 5.29 -17.34 -0.09 1.70 16 20 N -0.81 -20.50 10.86 55.55 0.60 -19.90 16 21 Si 0.91 18.59 29.57 -169.99 -5.03 13.57 16 22 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 23 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 24 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 25 C -0.16 -4.10 8.55 -38.67 -0.33 -4.44 16 26 C 0.12 1.31 5.89 -3.61 -0.02 1.29 16 27 C 0.07 0.64 2.62 -67.36 -0.18 0.46 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 C -0.15 -1.03 8.76 37.16 0.33 -0.70 16 30 H 0.06 0.41 6.41 -51.93 -0.33 0.07 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.55 5.64 -51.93 -0.29 0.26 16 34 H 0.03 0.26 8.12 -51.93 -0.42 -0.16 16 35 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.84 6.18 -51.92 -0.32 0.52 16 37 H 0.14 2.06 4.46 -54.15 -0.24 1.82 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.42 7.70 8.30 -40.82 -0.34 7.37 16 40 H 0.11 2.36 6.31 -52.48 -0.33 2.03 16 41 H 0.09 1.83 8.06 -52.48 -0.42 1.41 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.72 16 43 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 44 H 0.13 3.25 6.32 -52.49 -0.33 2.91 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.10 1.12 7.04 -51.93 -0.37 0.75 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.39 6.15 -51.93 -0.32 0.07 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -28.17 386.13 -9.86 -38.03 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -7.07 Total: 12.24 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: -2.74 Total: -4.23 kcal Atomic # 7 Polarization: -45.75 SS G_CDS: -0.99 Total: -46.74 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.15 Total: -18.69 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -28.17 -9.86 -38.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590782706.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.867 kcal (2) G-P(sol) polarization free energy of solvation -28.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds