Wall clock time and date at job start Wed Apr 1 2020 02:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47477 * 2 1 4 4 C 1.34947 * 126.03650 * 124.99555 * 3 2 1 5 5 C 1.35316 * 107.74631 * 180.02562 * 4 3 2 6 6 C 1.50695 * 126.04324 * 180.02562 * 5 4 3 7 7 N 1.46897 * 109.47317 * 89.99680 * 6 5 4 8 8 C 1.46901 * 111.00385 * 179.97438 * 7 6 5 9 9 C 1.52994 * 109.47362 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.47347 * 305.00334 * 9 8 7 11 11 O 1.42894 * 109.47276 * 65.00244 * 9 8 7 12 12 C 1.53005 * 109.47340 * 185.00299 * 9 8 7 13 13 O 1.42897 * 109.47370 * 174.99731 * 12 9 8 14 14 C 1.35676 * 116.99919 * 179.97438 * 13 12 9 15 15 C 1.39308 * 119.81732 * 359.72735 * 14 13 12 16 16 C 1.36436 * 120.18170 * 179.76068 * 15 14 13 17 17 C 1.40838 * 119.81395 * 0.51249 * 16 15 14 18 18 C 1.41213 * 120.18121 * 179.71672 * 17 16 15 19 19 H 1.07999 * 119.99671 * 24.57669 * 18 17 16 20 20 C 1.39890 * 120.00116 * 204.57254 * 18 17 16 21 21 N 1.30879 * 120.00022 * 17.93470 * 20 18 17 22 22 Si 1.86802 * 119.99851 * 197.93466 * 20 18 17 23 23 H 1.48510 * 109.46947 * 90.00260 * 22 20 18 24 24 H 1.48504 * 109.47129 * 209.99881 * 22 20 18 25 25 H 1.48500 * 109.47378 * 330.00122 * 22 20 18 26 26 C 1.40835 * 119.63959 * 359.74373 * 17 16 15 27 27 C 1.36440 * 119.80958 * 0.02562 * 26 17 16 28 28 C 1.39873 * 107.91807 * 0.02562 * 5 4 3 29 29 N 1.30829 * 108.20291 * 0.02562 * 28 5 4 30 30 H 1.08999 * 109.47196 * 300.00136 * 1 2 3 31 31 H 1.09002 * 109.47000 * 59.99597 * 1 2 3 32 32 H 1.08994 * 109.47592 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47247 * 240.00412 * 2 1 3 34 34 H 1.09002 * 109.47000 * 120.00403 * 2 1 3 35 35 H 1.07996 * 126.12553 * 359.76687 * 4 3 2 36 36 H 1.08997 * 109.47499 * 209.99998 * 6 5 4 37 37 H 1.09011 * 109.46961 * 330.00331 * 6 5 4 38 38 H 1.00900 * 111.00401 * 303.95865 * 7 6 5 39 39 H 1.08996 * 109.47280 * 300.00933 * 8 7 6 40 40 H 1.09001 * 109.46592 * 60.00419 * 8 7 6 41 41 H 0.96705 * 113.99804 * 60.00115 * 11 9 8 42 42 H 1.09000 * 109.47107 * 295.00389 * 12 9 8 43 43 H 1.08999 * 109.46966 * 55.00073 * 12 9 8 44 44 H 1.07997 * 119.90883 * 0.02562 * 15 14 13 45 45 H 1.08007 * 120.09464 * 180.25486 * 16 15 14 46 46 H 0.96994 * 120.00037 * 179.97438 * 21 20 18 47 47 H 1.07993 * 120.09305 * 179.97438 * 26 17 16 48 48 H 1.08007 * 119.90467 * 179.97438 * 27 26 17 49 49 H 1.08007 * 125.89779 * 180.02562 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8731 1.9210 0.8939 5 6 3.0714 3.2137 0.5464 6 6 3.9549 4.1998 1.2660 7 7 5.3112 4.1425 0.7048 8 6 6.2023 5.0932 1.3831 9 6 7.6023 5.0049 0.7722 10 1 7.9531 3.9739 0.8152 11 8 7.5558 5.4359 -0.5894 12 6 8.5596 5.9026 1.5589 13 8 9.8887 5.7318 1.0629 14 6 10.8662 6.4619 1.6564 15 6 10.5463 7.3324 2.6959 16 6 11.5241 8.0666 3.3012 17 6 12.8582 7.9505 2.8652 18 6 13.8755 8.7112 3.4823 19 1 13.7475 9.0629 4.4953 20 6 15.0489 9.0090 2.7814 21 7 15.0769 8.9033 1.4772 22 14 16.5760 9.5575 3.7070 23 1 17.3891 8.3687 4.0691 24 1 17.3787 10.4624 2.8455 25 1 16.1743 10.2774 4.9422 26 6 13.1722 7.0722 1.8101 27 6 12.1833 6.3416 1.2186 28 6 2.3113 3.4728 -0.5989 29 7 1.6791 2.3754 -0.9267 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.3159 1.4135 1.7381 36 1 3.5529 5.2054 1.1425 37 1 3.9897 3.9500 2.3265 38 1 5.6815 3.2049 0.7488 39 1 5.8157 6.1048 1.2601 40 1 6.2527 4.8500 2.4445 41 1 7.2516 6.3468 -0.7034 42 1 8.2593 6.9439 1.4428 43 1 8.5279 5.6309 2.6141 44 1 9.5222 7.4232 3.0263 45 1 11.2751 8.7380 4.1098 46 1 15.8904 9.1101 0.9912 47 1 14.1928 6.9778 1.4696 48 1 12.4223 5.6679 0.4090 49 1 2.2560 4.4160 -1.1222 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591766535.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:39 Heat of formation + Delta-G solvation = -14.291655 kcal Electronic energy + Delta-G solvation = -27955.227907 eV Core-core repulsion = 23883.072873 eV Total energy + Delta-G solvation = -4072.155034 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.10079 -40.62377 -39.02277 -37.79101 -36.45147 -35.17208 -35.10944 -32.33548 -31.67234 -31.12296 -30.89479 -30.04660 -27.19453 -26.35507 -24.91420 -24.20784 -23.16559 -22.43244 -22.18964 -21.59719 -20.96602 -19.24070 -18.72116 -18.05420 -17.56672 -17.29224 -17.02223 -16.42981 -16.16529 -15.97471 -15.72705 -15.58185 -15.40256 -15.10981 -15.01047 -14.77050 -14.42141 -14.06606 -14.04583 -13.91357 -13.74461 -13.48725 -13.24167 -13.13728 -12.97418 -12.83152 -12.79728 -12.59177 -12.51803 -12.37158 -12.20972 -11.87532 -11.67246 -11.56915 -11.46391 -11.18514 -10.89771 -10.84743 -10.34426 -9.54835 -9.45642 -9.13517 -8.91061 -8.58359 -6.21768 0.96158 0.99371 1.04059 1.40663 1.53718 1.53834 1.68086 1.82694 2.23690 2.48828 2.73991 3.44056 3.58870 3.65994 3.71926 3.94997 3.99910 4.08145 4.10319 4.12367 4.19239 4.30895 4.31551 4.35905 4.39155 4.42588 4.49800 4.55103 4.72738 4.77203 4.80349 4.88457 4.91248 4.99319 5.07166 5.11218 5.21916 5.23269 5.23415 5.29691 5.60327 5.65743 5.74063 5.89894 6.07019 6.10513 6.19992 6.27812 6.47603 6.58264 6.79341 6.82414 6.93418 6.96291 7.12198 8.38206 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.042980 B = 0.001329 C = 0.001324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.308255 B =21057.768317 C =21146.853653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.121 3.879 3 N -0.377 5.377 4 C 0.062 3.938 5 C -0.248 4.248 6 C 0.145 3.855 7 N -0.686 5.686 8 C 0.043 3.957 9 C 0.123 3.877 10 H 0.093 0.907 11 O -0.563 6.563 12 C 0.029 3.971 13 O -0.332 6.332 14 C 0.000 4.000 15 C -0.164 4.164 16 C -0.207 4.207 17 C 0.054 3.946 18 C -0.500 4.500 19 H 0.077 0.923 20 C 0.034 3.966 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.263 1.263 24 H -0.270 1.270 25 H -0.257 1.257 26 C -0.152 4.152 27 C -0.135 4.135 28 C 0.052 3.948 29 N -0.337 5.337 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.126 0.874 35 H 0.202 0.798 36 H 0.080 0.920 37 H 0.047 0.953 38 H 0.341 0.659 39 H 0.088 0.912 40 H 0.056 0.944 41 H 0.383 0.617 42 H 0.064 0.936 43 H 0.071 0.929 44 H 0.131 0.869 45 H 0.107 0.893 46 H 0.287 0.713 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.355 -14.362 1.604 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 N -0.160 5.160 4 C -0.085 4.085 5 C -0.260 4.260 6 C 0.016 3.984 7 N -0.318 5.318 8 C -0.087 4.087 9 C 0.063 3.937 10 H 0.111 0.889 11 O -0.369 6.369 12 C -0.047 4.047 13 O -0.248 6.248 14 C -0.044 4.044 15 C -0.182 4.182 16 C -0.227 4.227 17 C 0.052 3.948 18 C -0.530 4.530 19 H 0.095 0.905 20 C -0.180 4.180 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.188 1.188 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.172 4.172 27 C -0.154 4.154 28 C -0.133 4.133 29 N -0.159 5.159 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.144 0.856 35 H 0.219 0.781 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.160 0.840 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.232 0.768 42 H 0.082 0.918 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.125 0.875 46 H 0.098 0.902 47 H 0.126 0.874 48 H 0.123 0.877 49 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -26.017 -15.339 -0.206 30.203 hybrid contribution 1.277 1.039 1.647 2.329 sum -24.740 -14.300 1.441 28.612 Atomic orbital electron populations 1.21996 0.93714 1.03863 1.02088 1.22011 0.96212 0.76274 1.05395 1.48969 1.35478 1.10753 1.20753 1.22887 0.94618 0.94467 0.96573 1.20099 1.08240 0.95796 1.01829 1.20079 0.86180 0.97467 0.94682 1.60349 1.02090 1.10774 1.58595 1.22422 0.91137 0.98717 0.96411 1.21808 0.92308 0.97971 0.81576 0.88859 1.86603 1.89874 1.35154 1.25310 1.23531 0.81391 1.00769 0.99039 1.85884 1.16020 1.63372 1.59510 1.18706 0.88294 0.99214 0.98164 1.20700 0.99441 0.99707 0.98395 1.20813 0.92606 1.04575 1.04699 1.17959 0.92716 0.91602 0.92546 1.19724 1.01175 1.31209 1.00880 0.90527 1.26731 1.02785 0.93213 0.95251 1.69893 1.29834 1.37452 1.08741 0.85208 0.76674 0.78829 0.79004 1.18811 1.19430 1.18114 1.20890 0.98068 0.97925 1.00316 1.20008 0.91070 1.02573 1.01735 1.24057 0.95324 0.97629 0.96322 1.77267 1.25450 0.97911 1.15249 0.92745 0.93344 0.88436 0.89620 0.85603 0.78144 0.90186 0.93485 0.84043 0.89322 0.92609 0.76836 0.91769 0.91069 0.85148 0.87537 0.90242 0.87353 0.87708 0.79485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.10 71.98 0.73 -0.55 16 2 C 0.12 0.98 7.23 86.38 0.62 1.60 16 3 N -0.38 -5.79 3.68 -348.07 -1.28 -7.07 16 4 C 0.06 0.80 11.36 83.54 0.95 1.75 16 5 C -0.25 -3.87 5.61 -20.14 -0.11 -3.99 16 6 C 0.15 1.91 6.17 85.56 0.53 2.44 16 7 N -0.69 -11.02 6.44 -517.95 -3.33 -14.35 16 8 C 0.04 0.66 5.32 86.30 0.46 1.12 16 9 C 0.12 2.79 3.43 30.59 0.10 2.89 16 10 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 11 O -0.56 -15.03 13.25 -144.34 -1.91 -16.94 16 12 C 0.03 0.80 4.37 71.98 0.31 1.11 16 13 O -0.33 -13.14 10.09 -85.30 -0.86 -14.00 16 14 C 0.00 0.01 6.71 22.79 0.15 0.16 16 15 C -0.16 -7.09 8.96 22.11 0.20 -6.89 16 16 C -0.21 -10.10 9.74 22.49 0.22 -9.88 16 17 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 18 C -0.50 -27.17 9.04 23.40 0.21 -26.95 16 19 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 20 C 0.03 1.74 5.13 85.23 0.44 2.17 16 21 N -0.83 -44.39 10.96 21.82 0.24 -44.15 16 22 Si 0.98 38.53 29.60 68.60 2.03 40.56 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 24 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 C -0.15 -8.28 8.64 22.49 0.19 -8.09 16 27 C -0.14 -6.73 9.92 22.11 0.22 -6.51 16 28 C 0.05 1.00 11.96 85.24 1.02 2.02 16 29 N -0.34 -7.17 12.42 -57.02 -0.71 -7.88 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.10 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.21 8.07 -2.39 -0.02 0.19 16 35 H 0.20 1.08 8.06 -2.91 -0.02 1.05 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.34 5.44 8.72 -89.69 -0.78 4.66 16 39 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.38 7.78 9.05 -74.05 -0.67 7.11 16 42 H 0.06 1.65 7.63 -2.39 -0.02 1.63 16 43 H 0.07 1.76 7.66 -2.39 -0.02 1.75 16 44 H 0.13 4.56 6.27 -2.91 -0.02 4.54 16 45 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 46 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 47 H 0.11 6.12 6.16 -2.91 -0.02 6.11 16 48 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 49 H 0.19 2.97 8.06 -2.91 -0.02 2.94 16 Total: -1.00 -71.84 412.29 -0.18 -72.02 By element: Atomic # 1 Polarization: 37.08 SS G_CDS: -0.48 Total: 36.60 kcal Atomic # 6 Polarization: -50.90 SS G_CDS: 6.13 Total: -44.78 kcal Atomic # 7 Polarization: -68.37 SS G_CDS: -5.08 Total: -73.46 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -2.77 Total: -30.95 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Total: -71.84 -0.18 -72.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591766535.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.728 kcal (2) G-P(sol) polarization free energy of solvation -71.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds