Wall clock time and date at job start Wed Apr 1 2020 03:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47472 * 2 1 4 4 C 1.45644 * 117.70456 * 89.99873 * 3 2 1 5 5 C 1.52987 * 110.73755 * 158.07712 * 4 3 2 6 6 N 1.47270 * 108.18799 * 46.75139 * 5 4 3 7 7 C 1.34775 * 121.35619 * 118.47734 * 6 5 4 8 8 O 1.21585 * 120.00094 * 354.43603 * 7 6 5 9 9 N 1.34775 * 119.99695 * 174.44132 * 7 6 5 10 10 C 1.46505 * 119.99622 * 184.92206 * 9 7 6 11 11 C 1.50695 * 109.46941 * 180.02562 * 10 9 7 12 12 C 1.38641 * 119.74647 * 269.72197 * 11 10 9 13 13 C 1.37620 * 120.24513 * 179.76379 * 12 11 10 14 14 C 1.40717 * 119.74525 * 0.49056 * 13 12 11 15 15 C 1.41396 * 120.24476 * 179.78674 * 14 13 12 16 16 H 1.08003 * 120.00054 * 34.60129 * 15 14 13 17 17 C 1.39944 * 120.00308 * 214.60481 * 15 14 13 18 18 N 1.30829 * 119.99820 * 355.78640 * 17 15 14 19 19 Si 1.86800 * 120.00308 * 175.78591 * 17 15 14 20 20 H 1.48503 * 109.46633 * 90.00003 * 19 17 15 21 21 H 1.48498 * 109.47532 * 209.99687 * 19 17 15 22 22 H 1.48497 * 109.47218 * 330.00173 * 19 17 15 23 23 C 1.40714 * 119.51099 * 359.76797 * 14 13 12 24 24 C 1.37621 * 119.74748 * 359.97438 * 23 14 13 25 25 C 1.47054 * 117.28878 * 298.49438 * 6 5 4 26 26 H 1.08997 * 109.56462 * 162.68058 * 25 6 5 27 27 C 1.53004 * 109.56839 * 282.91439 * 25 6 5 28 28 C 1.33327 * 117.66433 * 270.04752 * 3 2 1 29 29 O 1.21287 * 118.50586 * 4.33860 * 28 3 2 30 30 H 1.08991 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46541 * 300.00214 * 1 2 3 32 32 H 1.09005 * 109.46888 * 59.99698 * 1 2 3 33 33 H 1.08998 * 109.46717 * 239.99882 * 2 1 3 34 34 H 1.09005 * 109.46888 * 120.00302 * 2 1 3 35 35 H 1.09004 * 109.21657 * 37.77053 * 4 3 2 36 36 H 1.08998 * 109.21873 * 278.38689 * 4 3 2 37 37 H 1.09000 * 109.72242 * 166.42282 * 5 4 3 38 38 H 1.09001 * 109.72201 * 287.03127 * 5 4 3 39 39 H 0.96993 * 120.00526 * 4.92849 * 9 7 6 40 40 H 1.08999 * 109.47080 * 300.00242 * 10 9 7 41 41 H 1.08998 * 109.47244 * 59.99972 * 10 9 7 42 42 H 1.08000 * 119.87791 * 0.02562 * 12 11 10 43 43 H 1.08002 * 120.12897 * 180.27761 * 13 12 11 44 44 H 0.96997 * 120.00047 * 180.02562 * 18 17 15 45 45 H 1.08003 * 120.12722 * 180.02562 * 23 14 13 46 46 H 1.07996 * 119.87498 * 180.02562 * 24 23 14 47 47 H 1.08998 * 109.46684 * 60.00407 * 27 25 6 48 48 H 1.09003 * 109.46763 * 180.02562 * 27 25 6 49 49 H 1.08997 * 109.47022 * 299.99709 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2442 2.0196 1.2895 5 6 3.2235 3.1868 1.1520 6 7 2.8123 3.9979 -0.0063 7 6 2.4502 5.2885 0.1343 8 8 2.3611 5.7775 1.2439 9 7 2.1868 6.0370 -0.9551 10 6 1.8988 7.4660 -0.8098 11 6 1.6400 8.0669 -2.1673 12 6 2.6935 8.5943 -2.8982 13 6 2.4696 9.1411 -4.1411 14 6 1.1640 9.1730 -4.6650 15 6 0.9213 9.7364 -5.9389 16 1 1.6571 9.6356 -6.7231 17 6 -0.2723 10.4247 -6.1838 18 7 -1.1987 10.4765 -5.2614 19 14 -0.5430 11.2697 -7.8277 20 1 -1.1866 10.3210 -8.7717 21 1 -1.4216 12.4517 -7.6381 22 1 0.7639 11.7078 -8.3802 23 6 0.1017 8.6396 -3.9118 24 6 0.3497 8.0929 -2.6735 25 6 2.8124 3.3423 -1.3226 26 1 2.2140 3.9267 -2.0215 27 6 4.2477 3.2353 -1.8418 28 6 2.2239 1.9651 -1.1809 29 8 1.9229 1.3582 -2.1869 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.6540 1.2875 1.9854 36 1 1.2955 2.3910 1.6769 37 1 3.1984 3.7963 2.0553 38 1 4.2320 2.8042 0.9945 39 1 2.1879 5.6296 -1.8353 40 1 1.0181 7.5970 -0.1810 41 1 2.7518 7.9636 -0.3484 42 1 3.6941 8.5721 -2.4926 43 1 3.2923 9.5474 -4.7108 44 1 -2.0261 10.9533 -5.4312 45 1 -0.9042 8.6585 -4.3045 46 1 -0.4640 7.6826 -2.0939 47 1 4.8435 2.6472 -1.1438 48 1 4.2458 2.7496 -2.8176 49 1 4.6760 4.2334 -1.9340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592025118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:18 Heat of formation + Delta-G solvation = -35.479008 kcal Electronic energy + Delta-G solvation = -30263.178813 eV Core-core repulsion = 26190.105026 eV Total energy + Delta-G solvation = -4073.073787 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.25324 -39.56972 -37.78941 -36.70751 -35.91350 -34.78519 -33.42131 -31.89237 -31.07855 -30.27252 -29.39328 -28.78675 -26.79690 -25.24022 -24.30655 -23.38405 -22.74496 -21.07689 -20.63774 -20.15775 -18.79304 -18.00219 -17.71996 -17.36721 -16.49847 -16.33465 -15.58674 -15.36898 -15.19946 -14.65706 -14.51123 -14.37274 -14.10727 -13.96004 -13.89697 -13.46117 -13.37191 -13.06029 -12.96313 -12.53367 -12.47143 -12.41504 -12.21955 -12.06547 -11.95182 -11.80026 -11.74159 -11.65544 -11.23388 -11.16994 -11.09255 -10.60555 -10.52294 -10.40517 -9.95581 -9.74786 -9.51404 -9.23093 -9.14003 -8.98563 -8.53679 -7.58354 -7.33892 -6.70525 -4.49669 2.26001 2.29432 2.60125 2.80274 2.96253 3.05126 3.06587 3.13393 3.25295 3.90608 4.01124 4.03713 4.41901 4.59048 4.63593 4.71701 4.78291 4.81299 4.92625 4.98090 5.11771 5.31869 5.36662 5.42824 5.45312 5.49371 5.54371 5.64048 5.71157 5.84922 5.89313 5.90886 6.01480 6.17517 6.21323 6.26569 6.34838 6.75701 6.85149 6.88278 7.02972 7.07993 7.16470 7.30510 7.53484 7.69375 7.80943 7.97172 8.00965 8.06200 8.22253 8.57226 8.65928 8.83306 8.87294 10.19939 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002331 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.334527 B =12009.377727 C =12708.044110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.600 5.600 4 C 0.098 3.902 5 C 0.115 3.885 6 N -0.635 5.635 7 C 0.709 3.291 8 O -0.591 6.591 9 N -0.732 5.732 10 C 0.200 3.800 11 C -0.233 4.233 12 C -0.078 4.078 13 C -0.218 4.218 14 C 0.112 3.888 15 C -0.462 4.462 16 H 0.077 0.923 17 C 0.070 3.930 18 N -0.807 5.807 19 Si 0.916 3.084 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.156 4.156 24 C -0.088 4.088 25 C 0.129 3.871 26 H 0.119 0.881 27 C -0.155 4.155 28 C 0.517 3.483 29 O -0.538 6.538 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.395 0.605 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.089 0.911 43 H 0.094 0.906 44 H 0.279 0.721 45 H 0.129 0.871 46 H 0.089 0.911 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.539 -17.294 10.854 21.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.019 4.019 3 N -0.333 5.333 4 C -0.026 4.026 5 C -0.008 4.008 6 N -0.376 5.376 7 C 0.411 3.589 8 O -0.470 6.470 9 N -0.387 5.387 10 C 0.078 3.922 11 C -0.235 4.235 12 C -0.096 4.096 13 C -0.237 4.237 14 C 0.110 3.890 15 C -0.492 4.492 16 H 0.095 0.905 17 C -0.146 4.146 18 N -0.433 5.433 19 Si 0.741 3.259 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.175 4.175 24 C -0.107 4.107 25 C 0.021 3.979 26 H 0.136 0.864 27 C -0.213 4.213 28 C 0.304 3.696 29 O -0.415 6.415 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.094 0.906 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.090 0.910 45 H 0.147 0.853 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.077 -17.051 11.189 21.281 hybrid contribution -0.285 0.330 -1.033 1.121 sum 5.792 -16.722 10.156 20.403 Atomic orbital electron populations 1.22092 0.95606 1.02254 1.02578 1.21558 0.94952 0.82223 1.03216 1.47284 1.65324 1.14745 1.05943 1.21874 1.00601 0.95499 0.84598 1.21771 0.96819 0.91346 0.90899 1.47506 1.72350 1.10446 1.07261 1.15891 0.77830 0.79950 0.85236 1.90891 1.60208 1.71601 1.24264 1.45881 1.74376 1.10661 1.07782 1.19871 0.99754 0.77130 0.95446 1.19068 0.94351 1.12899 0.97197 1.20423 0.96107 0.98299 0.94813 1.21110 0.97381 1.08808 0.96437 1.17735 0.90726 0.87646 0.92936 1.19592 1.01900 1.30186 0.97559 0.90520 1.25908 0.94869 0.95634 0.98168 1.69749 1.05998 1.34304 1.33278 0.86183 0.79194 0.79039 0.81520 1.19429 1.20219 1.18676 1.21615 1.00732 1.00363 0.94836 1.20659 0.94416 0.99386 0.96195 1.21355 0.99213 0.90789 0.86511 0.86376 1.22063 0.93335 1.03877 1.02058 1.20154 0.78111 0.88240 0.83103 1.90755 1.51163 1.63915 1.35650 0.91568 0.92613 0.91978 0.89579 0.90498 0.89390 0.91042 0.86782 0.90628 0.76878 0.92274 0.92402 0.89275 0.88758 0.90973 0.85335 0.89291 0.91906 0.90147 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 10.23 37.16 0.38 -0.99 16 2 C 0.10 0.82 5.88 -4.04 -0.02 0.79 16 3 N -0.60 -5.65 2.80 -174.90 -0.49 -6.14 16 4 C 0.10 0.72 6.58 -4.51 -0.03 0.69 16 5 C 0.12 1.00 6.39 -3.63 -0.02 0.97 16 6 N -0.64 -7.40 2.62 -172.24 -0.45 -7.86 16 7 C 0.71 10.81 8.32 -86.92 -0.72 10.09 16 8 O -0.59 -10.80 15.85 5.29 0.08 -10.71 16 9 N -0.73 -11.36 5.45 -66.42 -0.36 -11.72 16 10 C 0.20 3.52 5.79 -5.19 -0.03 3.49 16 11 C -0.23 -4.71 5.27 -104.33 -0.55 -5.26 16 12 C -0.08 -1.61 9.67 -39.66 -0.38 -1.99 16 13 C -0.22 -5.05 9.80 -38.87 -0.38 -5.43 16 14 C 0.11 2.86 5.55 -106.82 -0.59 2.27 16 15 C -0.46 -11.90 9.04 -37.74 -0.34 -12.24 16 16 H 0.08 1.90 7.85 -52.48 -0.41 1.48 16 17 C 0.07 1.73 5.42 -17.34 -0.09 1.63 16 18 N -0.81 -20.52 10.60 55.55 0.59 -19.93 16 19 Si 0.92 18.53 29.56 -169.99 -5.03 13.50 16 20 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 21 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 23 C -0.16 -3.89 8.67 -38.87 -0.34 -4.22 16 24 C -0.09 -1.93 9.67 -39.66 -0.38 -2.32 16 25 C 0.13 1.44 2.91 -68.91 -0.20 1.24 16 26 H 0.12 1.42 6.07 -51.93 -0.32 1.11 16 27 C -0.15 -1.45 9.38 37.16 0.35 -1.10 16 28 C 0.52 6.21 6.82 -11.76 -0.08 6.13 16 29 O -0.54 -8.10 16.25 5.55 0.09 -8.01 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.09 0.79 7.23 -51.93 -0.38 0.42 16 34 H 0.08 0.40 7.81 -51.93 -0.41 -0.01 16 35 H 0.09 0.38 7.85 -51.93 -0.41 -0.03 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.11 1.06 7.08 -51.93 -0.37 0.69 16 38 H 0.08 0.52 7.51 -51.93 -0.39 0.13 16 39 H 0.40 5.79 6.16 -40.82 -0.25 5.54 16 40 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 41 H 0.06 1.01 8.08 -51.93 -0.42 0.60 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.09 2.07 8.06 -52.49 -0.42 1.64 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.13 3.37 6.14 -52.48 -0.32 3.05 16 46 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 47 H 0.06 0.51 7.51 -51.93 -0.39 0.12 16 48 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 398.54 15.07 6.01 6.01 Total: -1.00 -30.35 398.54 -10.42 -40.77 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -7.42 Total: 10.34 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.45 Total: -6.24 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: -0.71 Total: -45.65 kcal Atomic # 8 Polarization: -18.90 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.35 -10.42 -40.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592025118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.289 kcal (2) G-P(sol) polarization free energy of solvation -30.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds