Wall clock time and date at job start Wed Apr 1 2020 03:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.47472 * 2 1 4 4 C 1.45644 * 117.70456 * 89.99873 * 3 2 1 5 5 C 1.52987 * 110.73755 * 158.07712 * 4 3 2 6 6 N 1.47270 * 108.18799 * 46.75139 * 5 4 3 7 7 C 1.34775 * 121.35619 * 118.47734 * 6 5 4 8 8 O 1.21585 * 120.00094 * 354.43603 * 7 6 5 9 9 N 1.34775 * 119.99695 * 174.44132 * 7 6 5 10 10 C 1.46505 * 119.99622 * 184.92206 * 9 7 6 11 11 C 1.50695 * 109.46941 * 180.02562 * 10 9 7 12 12 C 1.38641 * 119.74647 * 269.72197 * 11 10 9 13 13 C 1.37620 * 120.24513 * 179.76379 * 12 11 10 14 14 C 1.40717 * 119.74525 * 0.49056 * 13 12 11 15 15 C 1.41396 * 120.24476 * 179.78674 * 14 13 12 16 16 H 1.08003 * 120.00054 * 34.60129 * 15 14 13 17 17 C 1.39944 * 120.00308 * 214.60481 * 15 14 13 18 18 N 1.30829 * 119.99820 * 355.78640 * 17 15 14 19 19 Si 1.86800 * 120.00308 * 175.78591 * 17 15 14 20 20 H 1.48503 * 109.46633 * 90.00003 * 19 17 15 21 21 H 1.48498 * 109.47532 * 209.99687 * 19 17 15 22 22 H 1.48497 * 109.47218 * 330.00173 * 19 17 15 23 23 C 1.40714 * 119.51099 * 359.76797 * 14 13 12 24 24 C 1.37621 * 119.74748 * 359.97438 * 23 14 13 25 25 C 1.47054 * 117.28878 * 298.49438 * 6 5 4 26 26 H 1.08997 * 109.56462 * 162.68058 * 25 6 5 27 27 C 1.53004 * 109.56839 * 282.91439 * 25 6 5 28 28 C 1.33327 * 117.66433 * 270.04752 * 3 2 1 29 29 O 1.21287 * 118.50586 * 4.33860 * 28 3 2 30 30 H 1.08991 * 109.47333 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46541 * 300.00214 * 1 2 3 32 32 H 1.09005 * 109.46888 * 59.99698 * 1 2 3 33 33 H 1.08998 * 109.46717 * 239.99882 * 2 1 3 34 34 H 1.09005 * 109.46888 * 120.00302 * 2 1 3 35 35 H 1.09004 * 109.21657 * 37.77053 * 4 3 2 36 36 H 1.08998 * 109.21873 * 278.38689 * 4 3 2 37 37 H 1.09000 * 109.72242 * 166.42282 * 5 4 3 38 38 H 1.09001 * 109.72201 * 287.03127 * 5 4 3 39 39 H 0.96993 * 120.00526 * 4.92849 * 9 7 6 40 40 H 1.08999 * 109.47080 * 300.00242 * 10 9 7 41 41 H 1.08998 * 109.47244 * 59.99972 * 10 9 7 42 42 H 1.08000 * 119.87791 * 0.02562 * 12 11 10 43 43 H 1.08002 * 120.12897 * 180.27761 * 13 12 11 44 44 H 0.96997 * 120.00047 * 180.02562 * 18 17 15 45 45 H 1.08003 * 120.12722 * 180.02562 * 23 14 13 46 46 H 1.07996 * 119.87498 * 180.02562 * 24 23 14 47 47 H 1.08998 * 109.46684 * 60.00407 * 27 25 6 48 48 H 1.09003 * 109.46763 * 180.02562 * 27 25 6 49 49 H 1.08997 * 109.47022 * 299.99709 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2442 2.0196 1.2895 5 6 3.2235 3.1868 1.1520 6 7 2.8123 3.9979 -0.0063 7 6 2.4502 5.2885 0.1343 8 8 2.3611 5.7775 1.2439 9 7 2.1868 6.0370 -0.9551 10 6 1.8988 7.4660 -0.8098 11 6 1.6400 8.0669 -2.1673 12 6 2.6935 8.5943 -2.8982 13 6 2.4696 9.1411 -4.1411 14 6 1.1640 9.1730 -4.6650 15 6 0.9213 9.7364 -5.9389 16 1 1.6571 9.6356 -6.7231 17 6 -0.2723 10.4247 -6.1838 18 7 -1.1987 10.4765 -5.2614 19 14 -0.5430 11.2697 -7.8277 20 1 -1.1866 10.3210 -8.7717 21 1 -1.4216 12.4517 -7.6381 22 1 0.7639 11.7078 -8.3802 23 6 0.1017 8.6396 -3.9118 24 6 0.3497 8.0929 -2.6735 25 6 2.8124 3.3423 -1.3226 26 1 2.2140 3.9267 -2.0215 27 6 4.2477 3.2353 -1.8418 28 6 2.2239 1.9651 -1.1809 29 8 1.9229 1.3582 -2.1869 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.6540 1.2875 1.9854 36 1 1.2955 2.3910 1.6769 37 1 3.1984 3.7963 2.0553 38 1 4.2320 2.8042 0.9945 39 1 2.1879 5.6296 -1.8353 40 1 1.0181 7.5970 -0.1810 41 1 2.7518 7.9636 -0.3484 42 1 3.6941 8.5721 -2.4926 43 1 3.2923 9.5474 -4.7108 44 1 -2.0261 10.9533 -5.4312 45 1 -0.9042 8.6585 -4.3045 46 1 -0.4640 7.6826 -2.0939 47 1 4.8435 2.6472 -1.1438 48 1 4.2458 2.7496 -2.8176 49 1 4.6760 4.2334 -1.9340 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592025118.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:16 Heat of formation + Delta-G solvation = -52.621266 kcal Electronic energy + Delta-G solvation = -30263.922157 eV Core-core repulsion = 26190.105026 eV Total energy + Delta-G solvation = -4073.817131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.18500 -40.71273 -39.50173 -37.67876 -36.81759 -36.31090 -35.05302 -32.73571 -32.14182 -31.66785 -31.17864 -29.72056 -28.34167 -26.17487 -25.48644 -24.53944 -23.55223 -22.88646 -21.87944 -21.68641 -19.93912 -19.22494 -18.83071 -18.62094 -17.41035 -17.21185 -17.16780 -16.66104 -16.35633 -16.01135 -15.65731 -15.54372 -15.41832 -15.24781 -14.91358 -14.79255 -14.36518 -14.21176 -13.89097 -13.82388 -13.69496 -13.58528 -13.35902 -13.22866 -13.18566 -12.88198 -12.81277 -12.79859 -12.58254 -12.48622 -12.35447 -12.12487 -11.88373 -11.64049 -11.51188 -11.33142 -11.05075 -11.03476 -10.23224 -9.88303 -9.60685 -9.39451 -9.16959 -8.52963 -6.42056 0.78875 1.12413 1.37392 1.38716 1.39488 1.51035 1.57533 1.89652 2.07950 2.21966 2.68210 2.94206 3.23538 3.67002 3.71326 3.81534 3.94722 4.10809 4.13670 4.15097 4.29836 4.32393 4.37039 4.50711 4.51599 4.60956 4.66459 4.67158 4.68624 4.77639 4.82140 4.86524 4.97761 5.05349 5.11783 5.17577 5.19053 5.26598 5.33996 5.42981 5.46359 5.49925 5.70753 5.74367 5.91247 6.11532 6.19269 6.27669 6.37719 6.70338 6.81240 6.94811 6.96650 7.01238 7.45444 8.39271 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015592 B = 0.002331 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.334527 B =12009.377727 C =12708.044110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.595 5.595 4 C 0.099 3.901 5 C 0.110 3.890 6 N -0.627 5.627 7 C 0.710 3.290 8 O -0.621 6.621 9 N -0.731 5.731 10 C 0.211 3.789 11 C -0.213 4.213 12 C -0.073 4.073 13 C -0.228 4.228 14 C 0.079 3.921 15 C -0.499 4.499 16 H 0.075 0.925 17 C 0.027 3.973 18 N -0.840 5.840 19 Si 0.987 3.013 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.259 1.259 23 C -0.179 4.179 24 C -0.091 4.091 25 C 0.129 3.871 26 H 0.105 0.895 27 C -0.147 4.147 28 C 0.513 3.487 29 O -0.577 6.577 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.116 0.884 35 H 0.131 0.869 36 H 0.064 0.936 37 H 0.110 0.890 38 H 0.101 0.899 39 H 0.400 0.600 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.121 0.879 43 H 0.102 0.898 44 H 0.284 0.716 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.106 -18.735 12.511 23.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.022 4.022 3 N -0.326 5.326 4 C -0.024 4.024 5 C -0.013 4.013 6 N -0.366 5.366 7 C 0.412 3.588 8 O -0.502 6.502 9 N -0.387 5.387 10 C 0.088 3.912 11 C -0.215 4.215 12 C -0.092 4.092 13 C -0.247 4.247 14 C 0.077 3.923 15 C -0.529 4.529 16 H 0.093 0.907 17 C -0.185 4.185 18 N -0.468 5.468 19 Si 0.808 3.192 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.199 4.199 24 C -0.110 4.110 25 C 0.022 3.978 26 H 0.122 0.878 27 C -0.206 4.206 28 C 0.300 3.700 29 O -0.457 6.457 30 H 0.102 0.898 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.089 0.911 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.083 0.917 37 H 0.128 0.872 38 H 0.119 0.881 39 H 0.237 0.763 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.139 0.861 43 H 0.120 0.880 44 H 0.094 0.906 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.665 -18.544 12.884 23.846 hybrid contribution -0.728 0.629 -1.354 1.661 sum 6.937 -17.915 11.530 22.406 Atomic orbital electron populations 1.22061 0.95976 1.03027 1.01095 1.21724 0.94601 0.81456 1.04378 1.47403 1.64010 1.15295 1.05905 1.22041 1.00257 0.96021 0.84079 1.22071 0.98501 0.91212 0.89472 1.47497 1.71247 1.09392 1.08507 1.15899 0.77639 0.80888 0.84381 1.90875 1.61567 1.72578 1.25203 1.45608 1.74729 1.09953 1.08379 1.19639 0.99938 0.78283 0.93360 1.19298 0.93366 1.10991 0.97816 1.20719 0.97722 0.96953 0.93796 1.21305 0.96727 1.09137 0.97557 1.18061 0.91956 0.88633 0.93635 1.19836 1.03014 1.31976 0.98091 0.90655 1.26760 0.94212 0.95848 1.01703 1.69837 1.06541 1.35262 1.35150 0.85126 0.79140 0.77998 0.76973 1.18771 1.19516 1.18267 1.21522 0.99877 1.02174 0.96283 1.20827 0.95857 0.98881 0.95403 1.21362 1.00226 0.90252 0.85981 0.87751 1.22011 0.92093 1.04175 1.02293 1.20258 0.78015 0.88280 0.83486 1.90740 1.53054 1.64808 1.37117 0.89770 0.92033 0.95367 0.91076 0.86600 0.85108 0.91744 0.87171 0.88058 0.76322 0.92806 0.91573 0.86084 0.87978 0.90554 0.87504 0.88030 0.90242 0.90381 0.90378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 10.23 71.98 0.74 -1.71 16 2 C 0.10 1.35 5.88 86.38 0.51 1.86 16 3 N -0.59 -9.85 2.80 -826.46 -2.32 -12.16 16 4 C 0.10 1.11 6.58 86.54 0.57 1.68 16 5 C 0.11 1.56 6.39 86.23 0.55 2.11 16 6 N -0.63 -13.43 2.62 -817.11 -2.14 -15.57 16 7 C 0.71 20.56 8.32 179.06 1.49 22.05 16 8 O -0.62 -21.76 15.85 -3.98 -0.06 -21.82 16 9 N -0.73 -21.73 5.45 -482.30 -2.63 -24.36 16 10 C 0.21 7.10 5.79 85.63 0.50 7.60 16 11 C -0.21 -8.41 5.27 -19.68 -0.10 -8.51 16 12 C -0.07 -2.95 9.67 22.22 0.21 -2.73 16 13 C -0.23 -10.60 9.80 22.73 0.22 -10.38 16 14 C 0.08 4.19 5.55 -21.29 -0.12 4.07 16 15 C -0.50 -26.63 9.04 23.46 0.21 -26.42 16 16 H 0.08 3.86 7.85 -2.91 -0.02 3.84 16 17 C 0.03 1.37 5.42 85.26 0.46 1.83 16 18 N -0.84 -44.35 10.60 21.83 0.23 -44.12 16 19 Si 0.99 38.68 29.56 68.60 2.03 40.71 16 20 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 22 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 23 C -0.18 -9.25 8.67 22.73 0.20 -9.06 16 24 C -0.09 -4.05 9.67 22.22 0.21 -3.83 16 25 C 0.13 2.73 2.91 44.06 0.13 2.86 16 26 H 0.10 2.49 6.07 -2.39 -0.01 2.48 16 27 C -0.15 -2.49 9.38 71.98 0.68 -1.81 16 28 C 0.51 11.79 6.82 87.80 0.60 12.39 16 29 O -0.58 -17.48 16.25 -3.05 -0.05 -17.53 16 30 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.03 0.60 8.14 -2.38 -0.02 0.59 16 33 H 0.07 1.22 7.23 -2.39 -0.02 1.20 16 34 H 0.12 0.69 7.81 -2.38 -0.02 0.67 16 35 H 0.13 0.44 7.85 -2.39 -0.02 0.42 16 36 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.11 1.75 7.08 -2.39 -0.02 1.73 16 38 H 0.10 0.97 7.51 -2.39 -0.02 0.95 16 39 H 0.40 11.34 6.16 -92.71 -0.57 10.76 16 40 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 41 H 0.07 2.16 8.08 -2.39 -0.02 2.14 16 42 H 0.12 4.10 8.06 -2.91 -0.02 4.07 16 43 H 0.10 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.28 13.69 8.30 -92.71 -0.77 12.92 16 45 H 0.11 5.93 6.14 -2.91 -0.02 5.91 16 46 H 0.10 4.19 8.06 -2.91 -0.02 4.16 16 47 H 0.08 1.07 7.51 -2.39 -0.02 1.05 16 48 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.74 398.54 2.50 -66.24 By element: Atomic # 1 Polarization: 36.23 SS G_CDS: 0.39 Total: 36.62 kcal Atomic # 6 Polarization: -15.06 SS G_CDS: 7.05 Total: -8.01 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -6.86 Total: -96.21 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -0.11 Total: -39.35 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -68.74 2.50 -66.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592025118.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.615 kcal (2) G-P(sol) polarization free energy of solvation -68.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds