Wall clock time and date at job start Wed Apr 1 2020 05:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47390 * 2 1 4 4 C 1.34230 * 117.00041 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00135 * 179.97438 * 4 3 2 7 7 S 1.81395 * 109.57654 * 312.16205 * 6 4 3 8 8 C 1.81400 * 102.99957 * 300.15700 * 7 6 4 9 9 O 1.42100 * 109.47252 * 183.76831 * 7 6 4 10 10 C 1.53125 * 109.51752 * 72.31878 * 6 4 3 11 11 C 1.53036 * 109.27892 * 62.25258 * 10 6 4 12 12 N 1.46850 * 109.52231 * 59.17973 * 11 10 6 13 13 C 1.46897 * 110.99674 * 174.16454 * 12 11 10 14 14 C 1.53006 * 109.47011 * 307.70349 * 13 12 11 15 15 H 1.08994 * 109.46673 * 54.98303 * 14 13 12 16 16 C 1.53002 * 109.47022 * 294.98308 * 14 13 12 17 17 C 1.53001 * 109.46930 * 174.98389 * 14 13 12 18 18 C 1.50697 * 109.46664 * 184.99871 * 17 14 13 19 19 H 1.07998 * 120.00325 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99910 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00027 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46955 * 90.00237 * 22 20 18 24 24 H 1.48499 * 109.47071 * 209.99888 * 22 20 18 25 25 H 1.48494 * 109.47282 * 330.00296 * 22 20 18 26 26 C 1.46853 * 111.19418 * 298.25338 * 12 11 10 27 27 C 1.53042 * 109.52181 * 61.74749 * 26 12 11 28 28 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46845 * 300.00374 * 1 2 3 30 30 H 1.09003 * 109.46967 * 59.99542 * 1 2 3 31 31 H 1.09004 * 109.47073 * 240.00365 * 2 1 3 32 32 H 1.09003 * 109.46967 * 120.00458 * 2 1 3 33 33 H 1.08992 * 109.47166 * 59.99880 * 8 7 6 34 34 H 1.09005 * 109.47201 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46983 * 299.99605 * 8 7 6 36 36 H 1.09005 * 109.49970 * 182.19528 * 10 6 4 37 37 H 1.08999 * 109.50508 * 302.30350 * 10 6 4 38 38 H 1.09004 * 109.45812 * 179.19059 * 11 10 6 39 39 H 1.08996 * 109.45909 * 299.15960 * 11 10 6 40 40 H 1.08998 * 109.47481 * 67.70488 * 13 12 11 41 41 H 1.09001 * 109.46755 * 187.70866 * 13 12 11 42 42 H 1.09002 * 109.46932 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47083 * 300.00001 * 16 14 13 44 44 H 1.09003 * 109.46982 * 60.00151 * 16 14 13 45 45 H 1.08995 * 109.47551 * 304.99865 * 17 14 13 46 46 H 1.08998 * 109.47212 * 65.00332 * 17 14 13 47 47 H 0.96997 * 120.00596 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46107 * 301.72832 * 26 12 11 49 49 H 1.09006 * 109.45973 * 181.76024 * 26 12 11 50 50 H 1.09000 * 109.50101 * 180.87511 * 27 26 12 51 51 H 1.08998 * 109.53417 * 60.77849 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 16 3.0938 3.9367 -1.2679 8 6 3.4508 3.0310 -2.7985 9 8 3.6973 5.2218 -1.3262 10 6 3.7107 3.5784 1.3746 11 6 4.4612 2.7650 2.4315 12 7 5.8916 2.7315 2.1007 13 6 6.6630 2.0770 3.1658 14 6 6.3312 2.7285 4.5098 15 1 5.2538 2.6984 4.6719 16 6 6.8054 4.1832 4.5024 17 6 7.0375 1.9675 5.6336 18 6 6.6143 2.5317 6.9654 19 1 5.9116 3.3507 7.0062 20 6 7.1236 2.0015 8.1319 21 7 7.9790 1.0038 8.0822 22 14 6.5985 2.7002 9.7828 23 1 5.3983 1.9732 10.2689 24 1 7.7037 2.5412 10.7617 25 1 6.2759 4.1417 9.6302 26 6 6.1219 2.0775 0.8062 27 6 5.4210 2.8704 -0.2993 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0427 2.0228 -2.7277 34 1 2.9950 3.5494 -3.6422 35 1 4.5294 2.9769 -2.9455 36 1 4.0925 4.5993 1.3621 37 1 2.6470 3.5901 1.6119 38 1 4.3254 3.2271 3.4094 39 1 4.0694 1.7481 2.4529 40 1 6.4067 1.0183 3.2021 41 1 7.7283 2.1862 2.9623 42 1 6.5686 4.6474 5.4598 43 1 7.8828 4.2132 4.3402 44 1 6.3022 4.7253 3.7018 45 1 6.7678 0.9127 5.5836 46 1 8.1166 2.0724 5.5210 47 1 8.3376 0.6310 8.9028 48 1 5.7224 1.0638 0.8353 49 1 7.1923 2.0401 0.6035 50 1 5.5791 2.3761 -1.2579 51 1 5.8296 3.8801 -0.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602682193.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:34 Heat of formation + Delta-G solvation = -124.553583 kcal Electronic energy + Delta-G solvation = -30138.967778 eV Core-core repulsion = 26165.182628 eV Total energy + Delta-G solvation = -3973.785150 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.22827 -38.85427 -36.90283 -36.12632 -35.48744 -33.25309 -32.11503 -31.52933 -31.06338 -29.20523 -27.12102 -26.48423 -24.73802 -23.49592 -23.39581 -22.47742 -21.56898 -19.95247 -18.79088 -18.39887 -17.47173 -17.12034 -16.50300 -16.32179 -15.95628 -15.26226 -14.86735 -14.74977 -14.60184 -14.40964 -14.23108 -14.01901 -13.99182 -13.61279 -13.36208 -13.10492 -12.98128 -12.70115 -12.53499 -12.30958 -12.25509 -12.18337 -12.05007 -11.91990 -11.59493 -11.40832 -11.34065 -11.20075 -10.86352 -10.84453 -10.80901 -10.74294 -10.32943 -10.28766 -10.24346 -10.03764 -9.53739 -9.11956 -8.91838 -8.62467 -8.30913 -7.88085 -5.95757 -3.96950 0.95823 1.82143 2.12520 2.33428 3.31575 3.33774 3.40171 3.43631 4.11870 4.17899 4.30297 4.49801 4.58658 4.60758 4.66384 4.72351 4.81171 4.94948 5.09432 5.21795 5.31936 5.39485 5.39788 5.42275 5.44983 5.47224 5.53121 5.54865 5.63640 5.74836 5.84627 5.91338 5.97634 6.05271 6.06458 6.20178 6.38163 6.46628 6.58664 6.69773 7.03550 7.16907 7.22808 7.43509 7.45531 7.49743 7.71609 7.87628 8.04464 8.48329 9.09428 9.66272 11.15816 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002749 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.354820 B =10181.286153 C =10951.282401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.060 3.940 3 O -0.353 6.353 4 C 0.493 3.507 5 O -0.487 6.487 6 C -0.377 4.377 7 S 1.279 4.721 8 C -0.496 4.496 9 O -0.826 6.826 10 C -0.085 4.085 11 C 0.051 3.949 12 N -0.533 5.533 13 C 0.063 3.937 14 C -0.086 4.086 15 H 0.058 0.942 16 C -0.123 4.123 17 C 0.028 3.972 18 C -0.512 4.512 19 H 0.056 0.944 20 C 0.055 3.945 21 N -0.897 5.897 22 Si 0.890 3.110 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.042 3.958 27 C -0.093 4.093 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.109 0.891 34 H 0.112 0.888 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.027 0.973 41 H 0.070 0.930 42 H 0.054 0.946 43 H 0.040 0.960 44 H 0.041 0.959 45 H 0.012 0.988 46 H 0.016 0.984 47 H 0.259 0.741 48 H 0.068 0.932 49 H 0.071 0.929 50 H 0.068 0.932 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.303 0.293 -23.397 29.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.013 4.013 3 O -0.270 6.270 4 C 0.334 3.666 5 O -0.373 6.373 6 C -0.473 4.473 7 S 1.475 4.525 8 C -0.654 4.654 9 O -0.821 6.821 10 C -0.123 4.123 11 C -0.078 4.078 12 N -0.258 5.258 13 C -0.064 4.064 14 C -0.105 4.105 15 H 0.076 0.924 16 C -0.181 4.181 17 C -0.010 4.010 18 C -0.550 4.550 19 H 0.074 0.926 20 C -0.146 4.146 21 N -0.537 5.537 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.199 1.199 26 C -0.086 4.086 27 C -0.131 4.131 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.116 0.884 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.088 0.912 42 H 0.073 0.927 43 H 0.059 0.941 44 H 0.060 0.940 45 H 0.030 0.970 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.087 0.913 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.330 1.182 -23.225 29.002 hybrid contribution 1.880 -1.092 0.627 2.263 sum -15.450 0.090 -22.598 27.374 Atomic orbital electron populations 1.21827 0.92253 1.03150 1.03834 1.23103 0.95560 0.79785 1.02897 1.86466 1.23705 1.32812 1.84053 1.22460 0.80771 0.90689 0.72676 1.90614 1.59838 1.42519 1.44353 1.27387 1.05443 1.00409 1.14076 1.71364 1.13155 0.82066 0.85903 1.27714 1.08282 1.11847 1.17564 1.93132 1.77292 1.28123 1.83558 1.21403 1.01570 1.00636 0.88711 1.22174 0.88425 0.98143 0.99053 1.61988 1.07196 1.54330 1.02282 1.22281 0.97566 0.95409 0.91163 1.21335 1.00071 0.96049 0.93033 0.92384 1.21596 0.99964 0.96129 1.00363 1.19114 0.95573 0.94746 0.91537 1.21227 1.25686 1.17126 0.90954 0.92583 1.25025 0.95237 0.95130 0.99172 1.69967 1.30947 1.25104 1.27664 0.86633 0.78117 0.79490 0.84001 1.20776 1.21321 1.19863 1.22303 1.00070 0.97440 0.88808 1.21578 0.89520 1.02772 0.99265 0.90254 0.91082 0.91214 0.91135 0.90969 0.87184 0.86976 0.89263 0.88760 0.89391 0.88414 0.95343 0.95467 0.91190 0.92720 0.94071 0.94007 0.97008 0.96575 0.93116 0.91430 0.91096 0.91300 0.89354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 37.16 0.38 -0.24 16 2 C 0.06 0.40 6.19 37.16 0.23 0.63 16 3 O -0.35 -2.80 9.87 -39.26 -0.39 -3.18 16 4 C 0.49 5.16 4.71 36.01 0.17 5.33 16 5 O -0.49 -6.51 13.22 -18.75 -0.25 -6.76 16 6 C -0.38 -3.92 0.65 -91.65 -0.06 -3.98 16 7 S 1.28 10.19 12.47 -107.50 -1.34 8.85 16 8 C -0.50 -3.22 10.01 101.05 1.01 -2.21 16 9 O -0.83 -11.21 18.04 -35.23 -0.64 -11.84 16 10 C -0.08 -0.95 4.88 -26.65 -0.13 -1.08 16 11 C 0.05 0.74 4.85 -3.83 -0.02 0.72 16 12 N -0.53 -8.53 4.22 -234.66 -0.99 -9.52 16 13 C 0.06 1.17 4.51 -3.82 -0.02 1.15 16 14 C -0.09 -1.80 1.92 -90.62 -0.17 -1.98 16 15 H 0.06 1.21 5.89 -51.93 -0.31 0.90 16 16 C -0.12 -2.46 8.89 37.16 0.33 -2.13 16 17 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 18 C -0.51 -14.46 8.41 -34.44 -0.29 -14.75 16 19 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.32 13.29 55.43 0.74 -26.59 16 22 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 23 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.04 0.62 5.19 -3.83 -0.02 0.60 16 27 C -0.09 -1.14 4.36 -26.65 -0.12 -1.26 16 28 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.44 8.13 -51.93 -0.42 0.01 16 32 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 33 H 0.11 0.56 7.81 -51.93 -0.41 0.15 16 34 H 0.11 0.57 8.14 -51.92 -0.42 0.14 16 35 H 0.09 0.69 7.08 -51.92 -0.37 0.33 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.10 1.49 5.74 -51.93 -0.30 1.20 16 39 H 0.03 0.43 7.31 -51.93 -0.38 0.05 16 40 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.05 1.15 6.95 -51.93 -0.36 0.79 16 43 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.04 0.75 7.75 -51.93 -0.40 0.35 16 45 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 1.07 5.32 -51.93 -0.28 0.80 16 49 H 0.07 1.02 8.12 -51.93 -0.42 0.60 16 50 H 0.07 0.75 6.83 -51.93 -0.35 0.40 16 51 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -35.96 404.79 -9.70 -45.66 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.99 Total: -2.46 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 1.08 Total: -17.11 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: -0.25 Total: -36.11 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -1.27 Total: -21.78 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 16 Polarization: 10.19 SS G_CDS: -1.34 Total: 8.85 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.96 -9.70 -45.66 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682193.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.897 kcal (2) G-P(sol) polarization free energy of solvation -35.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds