Wall clock time and date at job start Wed Apr 1 2020 05:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45197 * 109.47390 * 2 1 4 4 C 1.34230 * 117.00041 * 179.97438 * 3 2 1 5 5 O 1.20826 * 119.99985 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00135 * 179.97438 * 4 3 2 7 7 S 1.81395 * 109.57654 * 312.16205 * 6 4 3 8 8 C 1.81400 * 102.99957 * 300.15700 * 7 6 4 9 9 O 1.42100 * 109.47252 * 183.76831 * 7 6 4 10 10 C 1.53125 * 109.51752 * 72.31878 * 6 4 3 11 11 C 1.53036 * 109.27892 * 62.25258 * 10 6 4 12 12 N 1.46850 * 109.52231 * 59.17973 * 11 10 6 13 13 C 1.46897 * 110.99674 * 174.16454 * 12 11 10 14 14 C 1.53006 * 109.47011 * 307.70349 * 13 12 11 15 15 H 1.08994 * 109.46673 * 54.98303 * 14 13 12 16 16 C 1.53002 * 109.47022 * 294.98308 * 14 13 12 17 17 C 1.53001 * 109.46930 * 174.98389 * 14 13 12 18 18 C 1.50697 * 109.46664 * 184.99871 * 17 14 13 19 19 H 1.07998 * 120.00325 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99910 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00027 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00163 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46955 * 90.00237 * 22 20 18 24 24 H 1.48499 * 109.47071 * 209.99888 * 22 20 18 25 25 H 1.48494 * 109.47282 * 330.00296 * 22 20 18 26 26 C 1.46853 * 111.19418 * 298.25338 * 12 11 10 27 27 C 1.53042 * 109.52181 * 61.74749 * 26 12 11 28 28 H 1.08997 * 109.47367 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46845 * 300.00374 * 1 2 3 30 30 H 1.09003 * 109.46967 * 59.99542 * 1 2 3 31 31 H 1.09004 * 109.47073 * 240.00365 * 2 1 3 32 32 H 1.09003 * 109.46967 * 120.00458 * 2 1 3 33 33 H 1.08992 * 109.47166 * 59.99880 * 8 7 6 34 34 H 1.09005 * 109.47201 * 180.02562 * 8 7 6 35 35 H 1.08999 * 109.46983 * 299.99605 * 8 7 6 36 36 H 1.09005 * 109.49970 * 182.19528 * 10 6 4 37 37 H 1.08999 * 109.50508 * 302.30350 * 10 6 4 38 38 H 1.09004 * 109.45812 * 179.19059 * 11 10 6 39 39 H 1.08996 * 109.45909 * 299.15960 * 11 10 6 40 40 H 1.08998 * 109.47481 * 67.70488 * 13 12 11 41 41 H 1.09001 * 109.46755 * 187.70866 * 13 12 11 42 42 H 1.09002 * 109.46932 * 179.97438 * 16 14 13 43 43 H 1.08995 * 109.47083 * 300.00001 * 16 14 13 44 44 H 1.09003 * 109.46982 * 60.00151 * 16 14 13 45 45 H 1.08995 * 109.47551 * 304.99865 * 17 14 13 46 46 H 1.08998 * 109.47212 * 65.00332 * 17 14 13 47 47 H 0.96997 * 120.00596 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.46107 * 301.72832 * 26 12 11 49 49 H 1.09006 * 109.45973 * 181.76024 * 26 12 11 50 50 H 1.09000 * 109.50101 * 180.87511 * 27 26 12 51 51 H 1.08998 * 109.53417 * 60.77849 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9209 2.9373 0.0000 7 16 3.0938 3.9367 -1.2679 8 6 3.4508 3.0310 -2.7985 9 8 3.6973 5.2218 -1.3262 10 6 3.7107 3.5784 1.3746 11 6 4.4612 2.7650 2.4315 12 7 5.8916 2.7315 2.1007 13 6 6.6630 2.0770 3.1658 14 6 6.3312 2.7285 4.5098 15 1 5.2538 2.6984 4.6719 16 6 6.8054 4.1832 4.5024 17 6 7.0375 1.9675 5.6336 18 6 6.6143 2.5317 6.9654 19 1 5.9116 3.3507 7.0062 20 6 7.1236 2.0015 8.1319 21 7 7.9790 1.0038 8.0822 22 14 6.5985 2.7002 9.7828 23 1 5.3983 1.9732 10.2689 24 1 7.7037 2.5412 10.7617 25 1 6.2759 4.1417 9.6302 26 6 6.1219 2.0775 0.8062 27 6 5.4210 2.8704 -0.2993 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 3.0427 2.0228 -2.7277 34 1 2.9950 3.5494 -3.6422 35 1 4.5294 2.9769 -2.9455 36 1 4.0925 4.5993 1.3621 37 1 2.6470 3.5901 1.6119 38 1 4.3254 3.2271 3.4094 39 1 4.0694 1.7481 2.4529 40 1 6.4067 1.0183 3.2021 41 1 7.7283 2.1862 2.9623 42 1 6.5686 4.6474 5.4598 43 1 7.8828 4.2132 4.3402 44 1 6.3022 4.7253 3.7018 45 1 6.7678 0.9127 5.5836 46 1 8.1166 2.0724 5.5210 47 1 8.3376 0.6310 8.9028 48 1 5.7224 1.0638 0.8353 49 1 7.1923 2.0401 0.6035 50 1 5.5791 2.3761 -1.2579 51 1 5.8296 3.8801 -0.3388 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602682193.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:33 Heat of formation + Delta-G solvation = -148.746962 kcal Electronic energy + Delta-G solvation = -30140.016882 eV Core-core repulsion = 26165.182628 eV Total energy + Delta-G solvation = -3974.834254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.10400 -39.96370 -37.88740 -37.05355 -36.86956 -34.93839 -33.51416 -32.41284 -32.08361 -29.83640 -28.98555 -27.91775 -26.06882 -24.76036 -24.48743 -23.60907 -22.67413 -20.92908 -20.40634 -19.24656 -18.55999 -18.22613 -17.89836 -17.20290 -17.09082 -16.53589 -16.21609 -15.92833 -15.86907 -15.42693 -15.35209 -15.06560 -14.93587 -14.51707 -14.36748 -14.27976 -14.18330 -13.69327 -13.49083 -13.40301 -13.36043 -13.25381 -13.19056 -13.00063 -12.80048 -12.77002 -12.56991 -12.47895 -12.39909 -12.29953 -12.21242 -12.07823 -11.81309 -11.46833 -11.41832 -11.23527 -11.13890 -11.05428 -10.81877 -10.54638 -9.42605 -9.19071 -8.18674 -6.28472 0.26069 1.06516 1.38480 1.39407 1.40927 1.52073 1.62095 2.41016 2.60134 2.89448 3.14700 3.24811 3.43846 3.74531 3.95598 4.06726 4.14247 4.17545 4.18538 4.20928 4.29018 4.31388 4.35379 4.41099 4.43418 4.48466 4.50068 4.65532 4.76037 4.76974 4.82150 4.88307 4.90479 4.97281 5.00085 5.05104 5.10368 5.11978 5.23930 5.32604 5.42479 5.45864 5.51395 5.55983 5.76369 5.85224 6.03189 6.14829 6.28324 6.67481 6.87207 7.40018 8.93709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014707 B = 0.002749 C = 0.002556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.354820 B =10181.286153 C =10951.282401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.339 6.339 4 C 0.500 3.500 5 O -0.519 6.519 6 C -0.384 4.384 7 S 1.339 4.661 8 C -0.497 4.497 9 O -0.879 6.879 10 C -0.083 4.083 11 C 0.048 3.952 12 N -0.533 5.533 13 C 0.074 3.926 14 C -0.075 4.075 15 H 0.063 0.937 16 C -0.112 4.112 17 C 0.034 3.966 18 C -0.527 4.527 19 H 0.064 0.936 20 C -0.004 4.004 21 N -0.937 5.937 22 Si 0.963 3.037 23 H -0.272 1.272 24 H -0.285 1.285 25 H -0.261 1.261 26 C 0.042 3.958 27 C -0.090 4.090 28 H 0.091 0.909 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.123 0.877 38 H 0.089 0.911 39 H 0.018 0.982 40 H 0.011 0.989 41 H 0.064 0.936 42 H 0.042 0.958 43 H 0.033 0.967 44 H 0.064 0.936 45 H -0.018 1.018 46 H -0.012 1.012 47 H 0.262 0.738 48 H 0.057 0.943 49 H 0.067 0.933 50 H 0.083 0.917 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 1.324 -24.601 31.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.255 6.255 4 C 0.342 3.658 5 O -0.408 6.408 6 C -0.478 4.478 7 S 1.535 4.465 8 C -0.656 4.656 9 O -0.875 6.875 10 C -0.121 4.121 11 C -0.080 4.080 12 N -0.258 5.258 13 C -0.053 4.053 14 C -0.094 4.094 15 H 0.081 0.919 16 C -0.169 4.169 17 C -0.003 4.003 18 C -0.565 4.565 19 H 0.082 0.918 20 C -0.201 4.201 21 N -0.578 5.578 22 Si 0.788 3.212 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.186 1.186 26 C -0.086 4.086 27 C -0.128 4.128 28 H 0.110 0.890 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.148 0.852 34 H 0.151 0.849 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.141 0.859 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.029 0.971 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.083 0.917 45 H 0.000 1.000 46 H 0.006 0.994 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.043 2.229 -24.421 31.671 hybrid contribution 2.694 -1.521 0.896 3.221 sum -17.348 0.709 -23.525 29.238 Atomic orbital electron populations 1.21856 0.89870 1.04222 1.04604 1.23355 0.97364 0.78904 1.02483 1.86471 1.22009 1.33725 1.83326 1.22400 0.81368 0.90137 0.71869 1.90614 1.60756 1.43446 1.45972 1.27468 1.04439 1.01028 1.14837 1.70807 1.10743 0.79743 0.85249 1.27723 1.08075 1.12916 1.16906 1.93032 1.78148 1.31692 1.84629 1.21418 1.03122 0.99481 0.88064 1.22230 0.87623 0.98162 1.00028 1.62004 1.08096 1.53717 1.01977 1.22007 0.97742 0.94447 0.91148 1.21136 0.99594 0.96232 0.92402 0.91923 1.21474 0.99703 0.95214 1.00513 1.18991 0.94248 0.93697 0.93382 1.21612 1.25720 1.17290 0.91909 0.91817 1.25993 0.95144 0.95386 1.03555 1.70113 1.32235 1.26572 1.28895 0.85470 0.77862 0.79248 0.78634 1.19733 1.21027 1.18558 1.22319 1.00233 0.97304 0.88772 1.21522 0.90710 1.01695 0.98903 0.89042 0.91203 0.89542 0.90426 0.92691 0.85188 0.84871 0.90191 0.89289 0.85908 0.89302 0.96327 0.97079 0.91796 0.93868 0.94734 0.91716 1.00008 0.99406 0.92947 0.92528 0.91490 0.89867 0.90389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.29 71.98 0.74 -0.08 16 2 C 0.05 0.61 6.19 71.98 0.45 1.06 16 3 O -0.34 -4.59 9.87 -51.42 -0.51 -5.10 16 4 C 0.50 9.70 4.71 71.24 0.34 10.04 16 5 O -0.52 -13.59 13.22 21.96 0.29 -13.30 16 6 C -0.38 -7.39 0.65 -11.46 -0.01 -7.39 16 7 S 1.34 18.14 12.47 -56.49 -0.70 17.43 16 8 C -0.50 -4.91 10.01 113.37 1.13 -3.78 16 9 O -0.88 -22.45 18.04 -148.98 -2.69 -25.13 16 10 C -0.08 -1.72 4.88 30.65 0.15 -1.57 16 11 C 0.05 1.38 4.85 86.32 0.42 1.79 16 12 N -0.53 -17.24 4.22 -896.32 -3.78 -21.02 16 13 C 0.07 2.87 4.51 86.31 0.39 3.26 16 14 C -0.08 -3.22 1.92 -10.79 -0.02 -3.24 16 15 H 0.06 2.64 5.89 -2.39 -0.01 2.63 16 16 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 17 C 0.03 1.88 4.45 29.85 0.13 2.01 16 18 C -0.53 -30.35 8.41 25.60 0.22 -30.13 16 19 H 0.06 3.50 7.06 -2.91 -0.02 3.48 16 20 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 21 N -0.94 -58.53 13.29 21.45 0.28 -58.25 16 22 Si 0.96 45.00 29.54 68.60 2.03 47.03 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 25 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 26 C 0.04 1.24 5.19 86.33 0.45 1.69 16 27 C -0.09 -2.14 4.36 30.65 0.13 -2.01 16 28 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.08 0.81 8.13 -2.39 -0.02 0.79 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.83 16 33 H 0.13 0.83 7.81 -2.39 -0.02 0.81 16 34 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.04 7.08 -2.39 -0.02 1.02 16 36 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.09 2.67 5.74 -2.38 -0.01 2.66 16 39 H 0.02 0.57 7.31 -2.39 -0.02 0.55 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.04 1.80 6.95 -2.39 -0.02 1.79 16 43 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 45 H -0.02 -1.10 8.14 -2.39 -0.02 -1.12 16 46 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 47 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 48 H 0.06 1.84 5.32 -2.39 -0.01 1.83 16 49 H 0.07 1.98 8.12 -2.38 -0.02 1.96 16 50 H 0.08 1.72 6.83 -2.39 -0.02 1.70 16 51 H 0.08 2.03 8.09 -2.39 -0.02 2.02 16 Total: -1.00 -79.79 404.79 1.43 -78.35 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: 0.89 Total: 11.92 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 5.62 Total: -31.94 kcal Atomic # 7 Polarization: -75.78 SS G_CDS: -3.49 Total: -79.27 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -2.90 Total: -43.53 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Atomic # 16 Polarization: 18.14 SS G_CDS: -0.70 Total: 17.43 kcal Total: -79.79 1.43 -78.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682193.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.393 kcal (2) G-P(sol) polarization free energy of solvation -79.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds