Wall clock time and date at job start Wed Apr 1 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45197 * 109.47232 * 2 1 4 4 C 1.34232 * 117.00361 * 180.02562 * 3 2 1 5 5 O 1.20826 * 119.99627 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00123 * 180.02562 * 4 3 2 7 7 S 1.81402 * 109.57158 * 311.31318 * 6 4 3 8 8 C 1.81400 * 103.00096 * 300.16146 * 7 6 4 9 9 O 1.42097 * 109.46903 * 183.77301 * 7 6 4 10 10 C 1.53113 * 109.52566 * 71.47289 * 6 4 3 11 11 C 1.53040 * 109.28000 * 62.25011 * 10 6 4 12 12 N 1.46848 * 109.52042 * 59.17859 * 11 10 6 13 13 C 1.46894 * 110.99783 * 174.15837 * 12 11 10 14 14 C 1.53002 * 109.47148 * 176.98626 * 13 12 11 15 15 H 1.09003 * 109.46861 * 303.07524 * 14 13 12 16 16 C 1.52994 * 109.47407 * 63.07559 * 14 13 12 17 17 C 1.53002 * 109.47118 * 183.07727 * 14 13 12 18 18 C 1.50703 * 109.46890 * 174.99837 * 17 14 13 19 19 H 1.07992 * 120.00186 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99938 * 179.97438 * 18 17 14 21 21 N 1.31517 * 119.99746 * 359.72777 * 20 18 17 22 22 Si 1.86797 * 120.00061 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47117 * 269.72443 * 22 20 18 24 24 H 1.48499 * 109.47193 * 29.72416 * 22 20 18 25 25 H 1.48506 * 109.47180 * 149.72392 * 22 20 18 26 26 C 1.46845 * 111.20080 * 298.25916 * 12 11 10 27 27 C 1.53039 * 109.52360 * 61.74310 * 26 12 11 28 28 H 1.09004 * 109.47458 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47302 * 299.99162 * 1 2 3 30 30 H 1.08996 * 109.47329 * 59.99663 * 1 2 3 31 31 H 1.09007 * 109.47011 * 240.00518 * 2 1 3 32 32 H 1.08996 * 109.47329 * 120.00337 * 2 1 3 33 33 H 1.08999 * 109.46953 * 59.99971 * 8 7 6 34 34 H 1.08995 * 109.47458 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47126 * 300.00264 * 8 7 6 36 36 H 1.09005 * 109.50665 * 302.31047 * 10 6 4 37 37 H 1.09004 * 109.50534 * 182.19421 * 10 6 4 38 38 H 1.08993 * 109.46372 * 299.16520 * 11 10 6 39 39 H 1.08997 * 109.45874 * 179.19512 * 11 10 6 40 40 H 1.09007 * 109.46885 * 56.99149 * 13 12 11 41 41 H 1.08995 * 109.47814 * 296.98712 * 13 12 11 42 42 H 1.09006 * 109.47084 * 300.00353 * 16 14 13 43 43 H 1.09008 * 109.46901 * 59.99736 * 16 14 13 44 44 H 1.08999 * 109.47529 * 180.02562 * 16 14 13 45 45 H 1.09006 * 109.47242 * 54.99990 * 17 14 13 46 46 H 1.08997 * 109.47070 * 294.99739 * 17 14 13 47 47 H 0.97000 * 119.99928 * 0.27172 * 21 20 18 48 48 H 1.08997 * 109.46668 * 181.75932 * 26 12 11 49 49 H 1.08999 * 109.46118 * 301.72683 * 26 12 11 50 50 H 1.08999 * 109.50320 * 180.88444 * 27 26 12 51 51 H 1.08994 * 109.50401 * 60.76390 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 16 3.1096 3.9310 -1.2828 8 6 3.4859 3.0184 -2.8047 9 8 3.7137 5.2159 -1.3394 10 6 3.6932 3.5848 1.3688 11 6 4.4302 2.7762 2.4389 12 7 5.8646 2.7413 2.1263 13 6 6.6226 2.0919 3.2040 14 6 8.0986 2.0070 2.8100 15 1 8.1922 1.4710 1.8655 16 6 8.6667 3.4189 2.6536 17 6 8.8749 1.2625 3.8981 18 6 10.3025 1.0710 3.4548 19 1 10.6240 1.4434 2.4935 20 6 11.1984 0.4212 4.2771 21 7 10.8085 -0.0267 5.4506 22 14 12.9681 0.1845 3.7280 23 1 13.0922 -1.1037 2.9996 24 1 13.3615 1.3004 2.8306 25 1 13.8575 0.1684 4.9171 26 6 6.1114 2.0815 0.8378 27 6 5.4245 2.8693 -0.2801 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.0770 2.0104 -2.7344 34 1 3.0402 3.5323 -3.6562 35 1 4.5664 2.9636 -2.9377 36 1 2.6264 3.5974 1.5927 37 1 4.0751 4.6056 1.3566 38 1 4.0383 1.7594 2.4600 39 1 4.2820 3.2428 3.4128 40 1 6.2322 1.0876 3.3686 41 1 6.5240 2.6747 4.1198 42 1 8.1136 3.9493 1.8784 43 1 8.5730 3.9550 3.5981 44 1 9.7181 3.3584 2.3724 45 1 8.4148 0.2897 4.0718 46 1 8.8556 1.8434 4.8202 47 1 9.8896 0.0966 5.7359 48 1 7.1842 2.0433 0.6489 49 1 5.7116 1.0679 0.8664 50 1 5.5947 2.3706 -1.2342 51 1 5.8337 3.8788 -0.3182 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602682196.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:43:48 Heat of formation + Delta-G solvation = -154.217395 kcal Electronic energy + Delta-G solvation = -30178.218166 eV Core-core repulsion = 26203.146696 eV Total energy + Delta-G solvation = -3975.071469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 345.181 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.14426 -40.02859 -37.93653 -37.16591 -36.99257 -35.17395 -33.49279 -32.54109 -32.00937 -29.87400 -28.66028 -27.98733 -26.04686 -24.91390 -24.48753 -23.66713 -22.76021 -20.98095 -20.63668 -19.29689 -18.95797 -18.24331 -17.93941 -17.18985 -17.13625 -16.33993 -16.24670 -15.94057 -15.69781 -15.51178 -15.39485 -15.30355 -15.04858 -14.83037 -14.53541 -14.30709 -13.97244 -13.71796 -13.62754 -13.49157 -13.36527 -13.32627 -13.24139 -13.03254 -12.89718 -12.81719 -12.55292 -12.52243 -12.42457 -12.27483 -12.11480 -11.98424 -11.84382 -11.56884 -11.46827 -11.33832 -11.21905 -11.09411 -10.60271 -10.56902 -9.47156 -9.24961 -8.70922 -6.39657 0.23719 1.03629 1.35131 1.47352 1.57004 1.58037 1.74827 2.52631 2.56943 2.82991 3.13451 3.20736 3.40182 3.71532 3.85419 3.99992 4.08306 4.11873 4.14034 4.18193 4.24455 4.25897 4.30218 4.30997 4.38255 4.45087 4.47220 4.54797 4.65697 4.68518 4.77091 4.78700 4.84717 4.86394 4.94407 4.99484 5.02356 5.07904 5.09174 5.23512 5.27421 5.29960 5.37834 5.52855 5.56317 5.93126 6.01569 6.10618 6.17210 6.56767 6.65312 7.41017 8.69818 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015478 B = 0.002705 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.571677 B =10348.426397 C =11052.965989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 O -0.337 6.337 4 C 0.500 3.500 5 O -0.521 6.521 6 C -0.384 4.384 7 S 1.345 4.655 8 C -0.500 4.500 9 O -0.879 6.879 10 C -0.081 4.081 11 C 0.052 3.948 12 N -0.534 5.534 13 C 0.075 3.925 14 C -0.071 4.071 15 H 0.049 0.951 16 C -0.109 4.109 17 C 0.020 3.980 18 C -0.606 4.606 19 H 0.049 0.951 20 C -0.042 4.042 21 N -0.940 5.940 22 Si 1.118 2.882 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.280 1.280 26 C 0.041 3.959 27 C -0.091 4.091 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.056 0.944 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.076 0.924 36 H 0.130 0.870 37 H 0.089 0.911 38 H 0.022 0.978 39 H 0.094 0.906 40 H 0.012 0.988 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.040 0.960 44 H 0.036 0.964 45 H -0.021 1.021 46 H -0.010 1.010 47 H 0.254 0.746 48 H 0.062 0.938 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.268 4.960 -16.527 33.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.253 6.253 4 C 0.342 3.658 5 O -0.410 6.410 6 C -0.478 4.478 7 S 1.540 4.460 8 C -0.658 4.658 9 O -0.875 6.875 10 C -0.119 4.119 11 C -0.077 4.077 12 N -0.259 5.259 13 C -0.053 4.053 14 C -0.089 4.089 15 H 0.068 0.932 16 C -0.167 4.167 17 C -0.018 4.018 18 C -0.644 4.644 19 H 0.067 0.933 20 C -0.238 4.238 21 N -0.577 5.577 22 Si 0.939 3.061 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.206 1.206 26 C -0.088 4.088 27 C -0.129 4.129 28 H 0.109 0.891 29 H 0.091 0.909 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.095 0.905 36 H 0.148 0.852 37 H 0.107 0.893 38 H 0.040 0.960 39 H 0.112 0.888 40 H 0.031 0.969 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.055 0.945 45 H -0.003 1.003 46 H 0.008 0.992 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.071 0.929 50 H 0.095 0.905 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -27.995 5.357 -15.995 32.684 hybrid contribution 1.049 -1.014 -0.266 1.483 sum -26.946 4.343 -16.261 31.770 Atomic orbital electron populations 1.21850 0.89672 1.04235 1.04685 1.23359 0.97453 0.78913 1.02436 1.86468 1.21809 1.33677 1.83355 1.22404 0.81401 0.90097 0.71927 1.90649 1.60870 1.43547 1.45904 1.27492 1.03762 1.01035 1.15546 1.70712 1.10738 0.79622 0.84883 1.27744 1.07980 1.13023 1.17096 1.93031 1.78193 1.31757 1.84500 1.21426 1.03411 0.99367 0.87743 1.22191 0.86985 0.98401 1.00130 1.61991 1.08250 1.53654 1.01959 1.22002 0.93210 0.95698 0.94365 1.21000 0.92991 0.96989 0.97952 0.93249 1.21442 0.99406 0.95114 1.00708 1.19154 0.95209 0.93167 0.94261 1.22419 0.96630 1.40041 1.05268 0.93302 1.27422 1.09644 0.93069 0.93698 1.70885 1.19525 1.46261 1.21076 0.82926 0.70056 0.77388 0.75691 1.19861 1.19515 1.20575 1.22330 1.00245 0.97054 0.89143 1.21521 0.91110 1.01552 0.98763 0.89083 0.90909 0.89638 0.90793 0.92554 0.85228 0.84781 0.90494 0.85238 0.89266 0.95989 0.88766 0.96939 0.90729 0.91963 0.94040 0.94494 1.00293 0.99173 0.93651 0.91939 0.92893 0.90453 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.29 71.98 0.74 0.11 16 2 C 0.05 0.56 6.19 71.98 0.45 1.01 16 3 O -0.34 -4.22 9.89 -51.43 -0.51 -4.73 16 4 C 0.50 9.61 4.70 71.23 0.33 9.94 16 5 O -0.52 -14.20 13.24 21.96 0.29 -13.91 16 6 C -0.38 -7.34 0.64 -11.46 -0.01 -7.34 16 7 S 1.34 18.06 12.49 -56.49 -0.71 17.36 16 8 C -0.50 -5.49 10.01 113.37 1.13 -4.36 16 9 O -0.88 -22.41 18.04 -148.98 -2.69 -25.09 16 10 C -0.08 -1.49 4.88 30.65 0.15 -1.34 16 11 C 0.05 1.27 5.26 86.33 0.45 1.73 16 12 N -0.53 -17.09 4.13 -896.38 -3.70 -20.79 16 13 C 0.08 2.86 4.52 86.31 0.39 3.25 16 14 C -0.07 -3.17 1.88 -10.79 -0.02 -3.19 16 15 H 0.05 2.31 6.01 -2.39 -0.01 2.30 16 16 C -0.11 -4.60 8.87 71.98 0.64 -3.96 16 17 C 0.02 1.08 3.76 29.85 0.11 1.19 16 18 C -0.61 -36.28 8.41 25.60 0.22 -36.06 16 19 H 0.05 2.88 7.05 -2.91 -0.02 2.86 16 20 C -0.04 -2.52 5.46 84.66 0.46 -2.05 16 21 N -0.94 -60.66 13.65 21.45 0.29 -60.37 16 22 Si 1.12 52.76 29.90 68.60 2.05 54.81 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 C 0.04 1.32 4.79 86.33 0.41 1.74 16 27 C -0.09 -2.37 4.35 30.65 0.13 -2.23 16 28 H 0.09 0.22 8.14 -2.38 -0.02 0.20 16 29 H 0.07 0.30 8.14 -2.39 -0.02 0.28 16 30 H 0.08 0.13 8.14 -2.39 -0.02 0.11 16 31 H 0.07 0.79 8.13 -2.38 -0.02 0.77 16 32 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.13 0.97 7.81 -2.39 -0.02 0.96 16 34 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.08 1.16 7.08 -2.39 -0.02 1.14 16 36 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.02 0.58 7.31 -2.39 -0.02 0.56 16 39 H 0.09 2.09 8.12 -2.39 -0.02 2.07 16 40 H 0.01 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 42 H 0.06 2.36 7.69 -2.38 -0.02 2.34 16 43 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.04 1.65 6.95 -2.39 -0.02 1.64 16 45 H -0.02 -1.26 8.01 -2.38 -0.02 -1.28 16 46 H -0.01 -0.58 8.00 -2.39 -0.02 -0.60 16 47 H 0.25 16.64 7.22 -92.71 -0.67 15.97 16 48 H 0.06 2.30 5.78 -2.39 -0.01 2.28 16 49 H 0.05 1.90 5.34 -2.39 -0.01 1.89 16 50 H 0.08 1.86 6.83 -2.39 -0.02 1.85 16 51 H 0.08 2.18 8.09 -2.39 -0.02 2.16 16 Total: -1.00 -83.56 403.51 1.63 -81.93 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: 0.99 Total: 12.36 kcal Atomic # 6 Polarization: -47.17 SS G_CDS: 5.60 Total: -41.57 kcal Atomic # 7 Polarization: -77.75 SS G_CDS: -3.41 Total: -81.16 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -2.91 Total: -43.73 kcal Atomic # 14 Polarization: 52.76 SS G_CDS: 2.05 Total: 54.81 kcal Atomic # 16 Polarization: 18.06 SS G_CDS: -0.71 Total: 17.36 kcal Total: -83.56 1.63 -81.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602682196.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.285 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds