Wall clock time and date at job start Wed Apr 1 2020 04:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47132 * 2 1 4 4 C 1.46896 * 111.00317 * 200.22265 * 3 2 1 5 5 C 1.53004 * 109.46795 * 66.05134 * 4 3 2 6 6 O 1.42895 * 109.47111 * 64.99817 * 5 4 3 7 7 C 1.46907 * 110.99534 * 76.26968 * 3 2 1 8 8 C 1.52998 * 109.47111 * 200.32405 * 7 3 2 9 9 N 1.46499 * 109.47161 * 183.79711 * 8 7 3 10 10 C 1.34774 * 120.00131 * 179.97438 * 9 8 7 11 11 O 1.21671 * 119.99862 * 4.89187 * 10 9 8 12 12 C 1.46887 * 120.00170 * 184.88795 * 10 9 8 13 13 C 1.36120 * 125.43498 * 174.01177 * 12 10 9 14 14 C 1.41708 * 107.74517 * 180.24395 * 13 12 10 15 15 C 1.40026 * 133.34900 * 179.82020 * 14 13 12 16 16 C 1.36578 * 119.82962 * 179.97438 * 15 14 13 17 17 C 1.38852 * 120.59716 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63808 * 359.97438 * 17 16 15 19 19 C 1.39089 * 119.81323 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.16120 * 180.02562 * 19 18 17 21 21 C 1.36886 * 125.62443 * 359.93400 * 20 19 18 22 22 H 1.07998 * 120.00218 * 138.09029 * 21 20 19 23 23 C 1.39014 * 119.99957 * 318.09056 * 21 20 19 24 24 N 1.31347 * 119.99709 * 342.40893 * 23 21 20 25 25 Si 1.86800 * 119.99798 * 162.12764 * 23 21 20 26 26 H 1.48505 * 109.46923 * 180.27778 * 25 23 21 27 27 H 1.48498 * 109.47227 * 300.27592 * 25 23 21 28 28 H 1.48501 * 109.46788 * 60.28173 * 25 23 21 29 29 H 1.09001 * 109.47135 * 64.02632 * 1 2 3 30 30 H 1.09001 * 109.46971 * 184.02349 * 1 2 3 31 31 H 1.08997 * 109.47160 * 304.02268 * 1 2 3 32 32 H 1.09007 * 109.46864 * 240.00521 * 2 1 3 33 33 H 1.08994 * 109.47068 * 120.00487 * 2 1 3 34 34 H 1.08993 * 109.47359 * 186.04638 * 4 3 2 35 35 H 1.09005 * 109.47188 * 306.05499 * 4 3 2 36 36 H 1.09003 * 109.46890 * 185.00599 * 5 4 3 37 37 H 1.09010 * 109.46834 * 304.99876 * 5 4 3 38 38 H 0.96704 * 113.99867 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.46470 * 80.32415 * 7 3 2 40 40 H 1.08999 * 109.47371 * 320.32784 * 7 3 2 41 41 H 1.08997 * 109.47127 * 63.80011 * 8 7 3 42 42 H 1.09000 * 109.47138 * 303.80336 * 8 7 3 43 43 H 0.97000 * 119.99488 * 0.02562 * 9 8 7 44 44 H 1.07996 * 126.13056 * 0.02562 * 13 12 10 45 45 H 1.08002 * 120.08320 * 359.94823 * 15 14 13 46 46 H 1.07998 * 119.69794 * 180.02562 * 16 15 14 47 47 H 1.08001 * 119.68017 * 179.97438 * 17 16 15 48 48 H 1.08006 * 120.09429 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00360 * 353.32445 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4085 1.4524 -0.4740 5 6 3.4643 1.0467 -1.9482 6 8 2.7500 2.0037 -2.7330 7 6 1.8883 1.9898 1.3323 8 6 1.9132 3.5142 1.2052 9 7 1.8734 4.1164 2.5401 10 6 1.8870 5.4573 2.6752 11 8 1.8423 6.1685 1.6891 12 6 1.9555 6.0600 4.0130 13 6 2.0910 7.3890 4.2738 14 6 2.1215 7.5521 5.6811 15 6 2.2447 8.6688 6.5169 16 6 2.2405 8.5063 7.8730 17 6 2.1145 7.2419 8.4328 18 6 1.9907 6.1277 7.6308 19 6 1.9923 6.2681 6.2470 20 7 1.8883 5.3685 5.2079 21 6 1.7488 4.0129 5.3377 22 1 1.0586 3.4777 4.7025 23 6 2.4956 3.3252 6.2874 24 7 3.5621 3.8826 6.8136 25 14 1.9777 1.6115 6.8207 26 1 2.9293 1.1018 7.8405 27 1 0.6119 1.6652 7.4011 28 1 1.9805 0.7051 5.6444 29 1 -0.3633 0.4501 -0.9239 30 1 -0.3633 -1.0251 0.0721 31 1 -0.3633 0.5750 0.8517 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7812 2.4706 -0.3631 35 1 4.0263 0.7732 0.1134 36 1 4.5033 1.0107 -2.2760 37 1 3.0101 0.0636 -2.0720 38 1 2.7441 1.8096 -3.6804 39 1 2.7160 1.6641 1.9623 40 1 0.9453 1.6780 1.7815 41 1 1.0475 3.8452 0.6314 42 1 2.8261 3.8214 0.6950 43 1 1.8380 3.5499 3.3267 44 1 2.1658 8.1776 3.5397 45 1 2.3433 9.6561 6.0903 46 1 2.3353 9.3690 8.5156 47 1 2.1134 7.1303 9.5070 48 1 1.8936 5.1483 8.0756 49 1 3.8846 4.7312 6.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613629293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:01 Heat of formation + Delta-G solvation = -21.831838 kcal Electronic energy + Delta-G solvation = -30588.681227 eV Core-core repulsion = 26516.199226 eV Total energy + Delta-G solvation = -4072.482001 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.69877 -38.94749 -38.23840 -36.37149 -36.09595 -34.44308 -33.69598 -31.36591 -30.65983 -30.19543 -29.04009 -28.16296 -26.75931 -24.86511 -23.58143 -23.03704 -21.97663 -21.06819 -20.52984 -20.16314 -19.37773 -18.48615 -17.58492 -16.66633 -16.15571 -15.91856 -15.73596 -15.53877 -14.88788 -14.80508 -14.49407 -14.29965 -14.03670 -13.89680 -13.50003 -13.48569 -13.30565 -13.18044 -13.14447 -12.88990 -12.42275 -12.19072 -11.95375 -11.92150 -11.80515 -11.58291 -11.40182 -11.23031 -10.98997 -10.90116 -10.73407 -10.62126 -10.48459 -10.38964 -10.06277 -9.93026 -9.43982 -9.24787 -8.85051 -8.49298 -8.40664 -7.59371 -7.07082 -6.78763 -4.75713 1.70017 2.58713 2.95533 3.01663 3.05451 3.20188 3.42674 3.75950 4.06919 4.18038 4.19149 4.34471 4.65538 4.75848 4.85498 4.87229 4.95138 5.05743 5.16250 5.20592 5.34663 5.40497 5.47898 5.55084 5.61798 5.69857 5.73311 5.78075 5.81463 5.85814 6.01522 6.10801 6.14983 6.25057 6.28231 6.38884 6.52682 6.74668 6.84949 6.88566 6.95422 6.98604 7.07712 7.16867 7.36305 7.45220 7.52247 7.53881 7.75508 7.77907 8.10854 8.23254 8.60585 8.92762 9.05730 10.02207 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.003186 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.414484 B = 8785.881601 C =10366.787479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.047 3.953 3 N -0.525 5.525 4 C 0.048 3.952 5 C 0.081 3.919 6 O -0.555 6.555 7 C 0.043 3.957 8 C 0.127 3.873 9 N -0.730 5.730 10 C 0.595 3.405 11 O -0.555 6.555 12 C -0.019 4.019 13 C -0.164 4.164 14 C -0.129 4.129 15 C -0.081 4.081 16 C -0.160 4.160 17 C -0.135 4.135 18 C -0.081 4.081 19 C 0.069 3.931 20 N -0.267 5.267 21 C -0.449 4.449 22 H 0.102 0.898 23 C 0.028 3.972 24 N -0.821 5.821 25 Si 1.074 2.926 26 H -0.270 1.270 27 H -0.274 1.274 28 H -0.277 1.277 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.035 0.965 34 H 0.087 0.913 35 H 0.049 0.951 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.371 0.629 39 H 0.044 0.956 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.061 0.939 43 H 0.415 0.585 44 H 0.134 0.866 45 H 0.108 0.892 46 H 0.106 0.894 47 H 0.109 0.891 48 H 0.119 0.881 49 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.916 -8.907 -8.744 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.081 4.081 3 N -0.250 5.250 4 C -0.080 4.080 5 C 0.003 3.997 6 O -0.359 6.359 7 C -0.085 4.085 8 C 0.003 3.997 9 N -0.391 5.391 10 C 0.384 3.616 11 O -0.434 6.434 12 C -0.134 4.134 13 C -0.192 4.192 14 C -0.134 4.134 15 C -0.100 4.100 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.101 4.101 19 C -0.045 4.045 20 N 0.069 4.931 21 C -0.576 4.576 22 H 0.119 0.881 23 C -0.188 4.188 24 N -0.447 5.447 25 Si 0.897 3.103 26 H -0.195 1.195 27 H -0.199 1.199 28 H -0.202 1.202 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.217 0.783 39 H 0.063 0.937 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.261 0.739 44 H 0.152 0.848 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.128 0.872 48 H 0.137 0.863 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.947 -9.526 -8.134 12.562 hybrid contribution 0.372 0.190 -0.664 0.784 sum -0.575 -9.336 -8.797 12.841 Atomic orbital electron populations 1.21765 0.94682 1.01091 1.02884 1.22164 0.96599 0.88729 1.00610 1.61791 1.20267 1.17943 1.24950 1.22249 0.89283 1.02840 0.93628 1.22226 0.94641 0.91518 0.91334 1.86664 1.76970 1.50729 1.21528 1.22287 1.02091 0.94678 0.89490 1.21097 1.02538 0.91178 0.84914 1.46664 1.75191 1.07405 1.09813 1.17189 0.75497 0.81731 0.87158 1.90732 1.51895 1.62002 1.38802 1.20219 1.14784 0.92540 0.85847 1.20424 1.11040 0.93927 0.93805 1.18017 1.09457 0.92854 0.93056 1.20128 1.00634 0.96362 0.92827 1.20331 1.06485 0.96614 0.94504 1.20607 1.04345 0.92276 0.98300 1.20206 1.00962 0.98702 0.90193 1.18431 1.07658 0.88415 0.89983 1.40126 1.46032 1.05019 1.01929 1.20435 1.28525 0.80735 1.27864 0.88115 1.26826 0.92582 1.06140 0.93268 1.70587 1.17206 1.19385 1.37495 0.83428 0.77007 0.72256 0.77619 1.19455 1.19936 1.20215 0.91874 0.92592 0.92414 0.90841 0.94679 0.89445 0.93322 0.93561 0.93721 0.78293 0.93735 0.89983 0.91033 0.92064 0.73949 0.84771 0.87436 0.87557 0.87243 0.86336 0.89594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.07 37.16 0.37 -1.07 16 2 C 0.05 0.48 5.54 -3.82 -0.02 0.46 16 3 N -0.52 -6.50 4.31 -234.62 -1.01 -7.51 16 4 C 0.05 0.54 5.17 -3.82 -0.02 0.52 16 5 C 0.08 0.74 7.13 37.16 0.26 1.01 16 6 O -0.56 -6.03 13.61 -35.23 -0.48 -6.51 16 7 C 0.04 0.60 4.92 -3.82 -0.02 0.58 16 8 C 0.13 2.17 5.84 -4.04 -0.02 2.15 16 9 N -0.73 -14.61 5.49 -61.56 -0.34 -14.95 16 10 C 0.60 13.84 7.76 -12.76 -0.10 13.74 16 11 O -0.56 -13.79 16.85 5.21 0.09 -13.71 16 12 C -0.02 -0.47 6.77 -82.25 -0.56 -1.02 16 13 C -0.16 -3.86 10.55 -39.02 -0.41 -4.27 16 14 C -0.13 -2.99 6.16 -106.89 -0.66 -3.65 16 15 C -0.08 -1.62 10.06 -39.51 -0.40 -2.02 16 16 C -0.16 -3.00 9.97 -39.95 -0.40 -3.40 16 17 C -0.13 -2.68 10.02 -39.50 -0.40 -3.07 16 18 C -0.08 -1.85 8.53 -39.41 -0.34 -2.19 16 19 C 0.07 1.70 5.41 -83.84 -0.45 1.25 16 20 N -0.27 -6.60 2.58 -56.08 -0.14 -6.74 16 21 C -0.45 -10.60 7.82 -15.01 -0.12 -10.72 16 22 H 0.10 2.25 6.24 -52.49 -0.33 1.92 16 23 C 0.03 0.66 4.43 -17.47 -0.08 0.58 16 24 N -0.82 -20.73 11.96 55.50 0.66 -20.06 16 25 Si 1.07 19.89 29.96 -169.99 -5.09 14.79 16 26 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 27 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 28 H -0.28 -4.70 7.11 56.52 0.40 -4.30 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 6.71 -51.93 -0.35 0.27 16 32 H 0.07 0.65 5.81 -51.92 -0.30 0.35 16 33 H 0.03 0.35 7.99 -51.93 -0.41 -0.06 16 34 H 0.09 1.13 6.62 -51.93 -0.34 0.79 16 35 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.35 6.08 -51.92 -0.32 0.04 16 38 H 0.37 2.24 9.12 45.56 0.42 2.65 16 39 H 0.04 0.63 7.99 -51.93 -0.41 0.21 16 40 H 0.08 1.11 6.48 -51.93 -0.34 0.77 16 41 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.06 1.08 6.73 -51.93 -0.35 0.73 16 43 H 0.41 8.31 4.23 -40.82 -0.17 8.13 16 44 H 0.13 2.92 8.06 -52.49 -0.42 2.50 16 45 H 0.11 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 47 H 0.11 1.86 8.06 -52.49 -0.42 1.43 16 48 H 0.12 2.79 6.74 -52.48 -0.35 2.43 16 49 H 0.29 7.87 6.87 -40.82 -0.28 7.59 16 LS Contribution 392.75 15.07 5.92 5.92 Total: -1.00 -30.02 392.75 -9.88 -39.90 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -6.14 Total: 20.00 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.35 Total: -11.14 kcal Atomic # 7 Polarization: -48.43 SS G_CDS: -0.83 Total: -49.26 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.39 Total: -20.21 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.09 Total: 14.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.02 -9.88 -39.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613629293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.072 kcal (2) G-P(sol) polarization free energy of solvation -30.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds