Wall clock time and date at job start Wed Apr 1 2020 04:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.47132 * 2 1 4 4 C 1.46896 * 111.00317 * 200.22265 * 3 2 1 5 5 C 1.53004 * 109.46795 * 66.05134 * 4 3 2 6 6 O 1.42895 * 109.47111 * 64.99817 * 5 4 3 7 7 C 1.46907 * 110.99534 * 76.26968 * 3 2 1 8 8 C 1.52998 * 109.47111 * 200.32405 * 7 3 2 9 9 N 1.46499 * 109.47161 * 183.79711 * 8 7 3 10 10 C 1.34774 * 120.00131 * 179.97438 * 9 8 7 11 11 O 1.21671 * 119.99862 * 4.89187 * 10 9 8 12 12 C 1.46887 * 120.00170 * 184.88795 * 10 9 8 13 13 C 1.36120 * 125.43498 * 174.01177 * 12 10 9 14 14 C 1.41708 * 107.74517 * 180.24395 * 13 12 10 15 15 C 1.40026 * 133.34900 * 179.82020 * 14 13 12 16 16 C 1.36578 * 119.82962 * 179.97438 * 15 14 13 17 17 C 1.38852 * 120.59716 * 359.97438 * 16 15 14 18 18 C 1.37841 * 120.63808 * 359.97438 * 17 16 15 19 19 C 1.39089 * 119.81323 * 0.02562 * 18 17 16 20 20 N 1.37838 * 133.16120 * 180.02562 * 19 18 17 21 21 C 1.36886 * 125.62443 * 359.93400 * 20 19 18 22 22 H 1.07998 * 120.00218 * 138.09029 * 21 20 19 23 23 C 1.39014 * 119.99957 * 318.09056 * 21 20 19 24 24 N 1.31347 * 119.99709 * 342.40893 * 23 21 20 25 25 Si 1.86800 * 119.99798 * 162.12764 * 23 21 20 26 26 H 1.48505 * 109.46923 * 180.27778 * 25 23 21 27 27 H 1.48498 * 109.47227 * 300.27592 * 25 23 21 28 28 H 1.48501 * 109.46788 * 60.28173 * 25 23 21 29 29 H 1.09001 * 109.47135 * 64.02632 * 1 2 3 30 30 H 1.09001 * 109.46971 * 184.02349 * 1 2 3 31 31 H 1.08997 * 109.47160 * 304.02268 * 1 2 3 32 32 H 1.09007 * 109.46864 * 240.00521 * 2 1 3 33 33 H 1.08994 * 109.47068 * 120.00487 * 2 1 3 34 34 H 1.08993 * 109.47359 * 186.04638 * 4 3 2 35 35 H 1.09005 * 109.47188 * 306.05499 * 4 3 2 36 36 H 1.09003 * 109.46890 * 185.00599 * 5 4 3 37 37 H 1.09010 * 109.46834 * 304.99876 * 5 4 3 38 38 H 0.96704 * 113.99867 * 179.97438 * 6 5 4 39 39 H 1.08997 * 109.46470 * 80.32415 * 7 3 2 40 40 H 1.08999 * 109.47371 * 320.32784 * 7 3 2 41 41 H 1.08997 * 109.47127 * 63.80011 * 8 7 3 42 42 H 1.09000 * 109.47138 * 303.80336 * 8 7 3 43 43 H 0.97000 * 119.99488 * 0.02562 * 9 8 7 44 44 H 1.07996 * 126.13056 * 0.02562 * 13 12 10 45 45 H 1.08002 * 120.08320 * 359.94823 * 15 14 13 46 46 H 1.07998 * 119.69794 * 180.02562 * 16 15 14 47 47 H 1.08001 * 119.68017 * 179.97438 * 17 16 15 48 48 H 1.08006 * 120.09429 * 179.97438 * 18 17 16 49 49 H 0.97001 * 120.00360 * 353.32445 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4085 1.4524 -0.4740 5 6 3.4643 1.0467 -1.9482 6 8 2.7500 2.0037 -2.7330 7 6 1.8883 1.9898 1.3323 8 6 1.9132 3.5142 1.2052 9 7 1.8734 4.1164 2.5401 10 6 1.8870 5.4573 2.6752 11 8 1.8423 6.1685 1.6891 12 6 1.9555 6.0600 4.0130 13 6 2.0910 7.3890 4.2738 14 6 2.1215 7.5521 5.6811 15 6 2.2447 8.6688 6.5169 16 6 2.2405 8.5063 7.8730 17 6 2.1145 7.2419 8.4328 18 6 1.9907 6.1277 7.6308 19 6 1.9923 6.2681 6.2470 20 7 1.8883 5.3685 5.2079 21 6 1.7488 4.0129 5.3377 22 1 1.0586 3.4777 4.7025 23 6 2.4956 3.3252 6.2874 24 7 3.5621 3.8826 6.8136 25 14 1.9777 1.6115 6.8207 26 1 2.9293 1.1018 7.8405 27 1 0.6119 1.6652 7.4011 28 1 1.9805 0.7051 5.6444 29 1 -0.3633 0.4501 -0.9239 30 1 -0.3633 -1.0251 0.0721 31 1 -0.3633 0.5750 0.8517 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.7812 2.4706 -0.3631 35 1 4.0263 0.7732 0.1134 36 1 4.5033 1.0107 -2.2760 37 1 3.0101 0.0636 -2.0720 38 1 2.7441 1.8096 -3.6804 39 1 2.7160 1.6641 1.9623 40 1 0.9453 1.6780 1.7815 41 1 1.0475 3.8452 0.6314 42 1 2.8261 3.8214 0.6950 43 1 1.8380 3.5499 3.3267 44 1 2.1658 8.1776 3.5397 45 1 2.3433 9.6561 6.0903 46 1 2.3353 9.3690 8.5156 47 1 2.1134 7.1303 9.5070 48 1 1.8936 5.1483 8.0756 49 1 3.8846 4.7312 6.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613629293.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:58 Heat of formation + Delta-G solvation = -42.429106 kcal Electronic energy + Delta-G solvation = -30589.574392 eV Core-core repulsion = 26516.199226 eV Total energy + Delta-G solvation = -4073.375166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.45478 -40.45086 -39.42830 -37.78108 -37.24991 -36.02575 -35.41974 -32.42332 -32.23096 -31.47115 -30.62506 -29.75999 -27.92174 -26.65847 -25.02149 -23.86329 -23.37891 -22.78795 -21.89703 -21.56479 -21.02841 -20.18659 -18.35854 -18.26567 -17.49862 -17.32577 -17.11775 -16.95426 -16.41769 -16.35823 -15.81023 -15.76720 -15.53198 -15.13712 -14.89874 -14.81473 -14.72114 -14.36356 -14.23472 -14.19242 -14.06152 -13.84435 -13.49844 -13.01376 -12.77337 -12.73270 -12.68526 -12.48367 -12.26378 -12.19814 -12.12322 -12.01210 -11.97165 -11.62476 -11.58149 -11.25999 -10.97151 -10.77864 -10.59993 -10.17631 -9.40469 -9.34781 -8.84669 -8.54103 -6.61378 -0.03524 0.93999 1.24130 1.48359 1.54470 1.75697 2.03219 2.19327 2.39258 2.60377 2.83018 3.00512 3.17570 3.45021 3.74441 3.86248 3.95309 4.02773 4.08782 4.18607 4.27369 4.31572 4.37455 4.40548 4.45172 4.53384 4.60706 4.63547 4.67532 4.68022 4.77620 4.79015 4.84748 4.87422 5.01228 5.06420 5.08809 5.14179 5.25058 5.34295 5.38594 5.39026 5.65180 5.73149 5.81745 5.96073 6.01468 6.04427 6.10802 6.40420 6.48181 6.82626 7.01825 7.14420 7.25594 8.13486 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.003186 C = 0.002700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.414484 B = 8785.881601 C =10366.787479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.535 5.535 4 C 0.041 3.959 5 C 0.083 3.917 6 O -0.585 6.585 7 C 0.054 3.946 8 C 0.132 3.868 9 N -0.719 5.719 10 C 0.590 3.410 11 O -0.581 6.581 12 C -0.048 4.048 13 C -0.174 4.174 14 C -0.149 4.149 15 C -0.084 4.084 16 C -0.151 4.151 17 C -0.121 4.121 18 C -0.111 4.111 19 C 0.045 3.955 20 N -0.281 5.281 21 C -0.461 4.461 22 H 0.108 0.892 23 C -0.001 4.001 24 N -0.842 5.842 25 Si 1.118 2.882 26 H -0.276 1.276 27 H -0.264 1.264 28 H -0.248 1.248 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.044 0.956 32 H 0.092 0.908 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.391 0.609 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.416 0.584 44 H 0.144 0.856 45 H 0.138 0.862 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.103 0.897 49 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.165 -9.910 -8.151 12.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.081 4.081 3 N -0.261 5.261 4 C -0.086 4.086 5 C 0.006 3.994 6 O -0.392 6.392 7 C -0.075 4.075 8 C 0.008 3.992 9 N -0.378 5.378 10 C 0.379 3.621 11 O -0.462 6.462 12 C -0.162 4.162 13 C -0.202 4.202 14 C -0.154 4.154 15 C -0.103 4.103 16 C -0.170 4.170 17 C -0.141 4.141 18 C -0.131 4.131 19 C -0.069 4.069 20 N 0.054 4.946 21 C -0.587 4.587 22 H 0.126 0.874 23 C -0.211 4.211 24 N -0.469 5.469 25 Si 0.934 3.066 26 H -0.201 1.201 27 H -0.189 1.189 28 H -0.172 1.172 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.110 0.890 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.062 0.938 40 H 0.106 0.894 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.261 0.739 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.170 0.830 47 H 0.160 0.840 48 H 0.121 0.879 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.203 -10.551 -7.579 13.047 hybrid contribution 0.449 0.628 -0.818 1.125 sum -0.755 -9.923 -8.397 13.021 Atomic orbital electron populations 1.21758 0.94510 1.02069 1.01870 1.22262 0.96703 0.87392 1.01757 1.61785 1.21199 1.19513 1.23561 1.22344 0.88822 1.01841 0.95631 1.22264 0.95814 0.91732 0.89619 1.86605 1.77407 1.51801 1.23385 1.22119 1.02380 0.92181 0.90800 1.21173 1.01482 0.93469 0.83092 1.46627 1.73709 1.06415 1.11056 1.17242 0.75573 0.82644 0.86675 1.90694 1.53514 1.62691 1.39318 1.20536 1.15956 0.93307 0.86407 1.20667 1.10926 0.94026 0.94548 1.18393 1.10186 0.93688 0.93127 1.20560 0.99619 0.96747 0.93352 1.20825 1.04115 0.97553 0.94476 1.21086 1.01372 0.91844 0.99773 1.20276 1.03655 0.99258 0.89953 1.18881 1.08204 0.89079 0.90723 1.40291 1.46781 1.05460 1.02094 1.20752 1.28679 0.80875 1.28390 0.87440 1.28223 0.91560 1.08755 0.92585 1.70708 1.18837 1.18726 1.38595 0.82935 0.76780 0.68679 0.78183 1.20121 1.18919 1.17191 0.92624 0.90559 0.93721 0.88986 0.94129 0.91924 0.91993 0.91693 0.91898 0.76056 0.93801 0.89369 0.92123 0.92971 0.73864 0.83869 0.84396 0.83019 0.83973 0.87908 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.07 71.98 0.72 -1.88 16 2 C 0.05 0.84 5.54 86.30 0.48 1.32 16 3 N -0.54 -12.83 4.31 -896.21 -3.86 -16.69 16 4 C 0.04 0.90 5.17 86.31 0.45 1.35 16 5 C 0.08 1.39 7.13 71.98 0.51 1.90 16 6 O -0.58 -12.12 13.61 -148.98 -2.03 -14.15 16 7 C 0.05 1.49 4.92 86.30 0.42 1.92 16 8 C 0.13 4.65 5.84 86.38 0.50 5.16 16 9 N -0.72 -29.87 5.49 -466.89 -2.56 -32.44 16 10 C 0.59 28.64 7.76 86.51 0.67 29.32 16 11 O -0.58 -30.09 16.85 -4.26 -0.07 -30.16 16 12 C -0.05 -2.43 6.77 39.91 0.27 -2.16 16 13 C -0.17 -8.42 10.55 22.63 0.24 -8.18 16 14 C -0.15 -6.99 6.16 -21.33 -0.13 -7.12 16 15 C -0.08 -3.21 10.06 22.32 0.22 -2.99 16 16 C -0.15 -5.15 9.97 22.03 0.22 -4.93 16 17 C -0.12 -4.53 10.02 22.32 0.22 -4.31 16 18 C -0.11 -5.13 8.53 22.38 0.19 -4.94 16 19 C 0.04 2.26 5.41 39.06 0.21 2.47 16 20 N -0.28 -14.42 2.58 -331.35 -0.85 -15.28 16 21 C -0.46 -22.34 7.82 84.09 0.66 -21.68 16 22 H 0.11 4.89 6.24 -2.91 -0.02 4.88 16 23 C 0.00 -0.03 4.43 84.95 0.38 0.35 16 24 N -0.84 -43.71 11.96 21.67 0.26 -43.45 16 25 Si 1.12 39.50 29.96 68.60 2.06 41.55 16 26 H -0.28 -10.01 7.11 99.48 0.71 -9.30 16 27 H -0.26 -8.89 7.11 99.48 0.71 -8.19 16 28 H -0.25 -7.59 7.11 99.48 0.71 -6.89 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.04 0.91 6.71 -2.39 -0.02 0.90 16 32 H 0.09 1.36 5.81 -2.38 -0.01 1.34 16 33 H 0.04 0.72 7.99 -2.39 -0.02 0.70 16 34 H 0.06 1.66 6.62 -2.39 -0.02 1.65 16 35 H 0.06 1.17 8.12 -2.38 -0.02 1.15 16 36 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.81 6.08 -2.38 -0.01 0.80 16 38 H 0.39 4.21 9.12 -74.05 -0.68 3.53 16 39 H 0.04 1.22 7.99 -2.39 -0.02 1.20 16 40 H 0.09 2.33 6.48 -2.39 -0.02 2.31 16 41 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 1.94 6.73 -2.39 -0.02 1.92 16 43 H 0.42 17.14 4.23 -92.71 -0.39 16.74 16 44 H 0.14 6.43 8.06 -2.91 -0.02 6.40 16 45 H 0.14 4.35 8.06 -2.91 -0.02 4.32 16 46 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 47 H 0.14 4.33 8.06 -2.91 -0.02 4.31 16 48 H 0.10 4.97 6.74 -2.91 -0.02 4.95 16 49 H 0.27 15.19 6.87 -92.71 -0.64 14.55 16 Total: -1.00 -67.98 392.75 -0.76 -68.74 By element: Atomic # 1 Polarization: 56.22 SS G_CDS: 0.06 Total: 56.28 kcal Atomic # 6 Polarization: -20.66 SS G_CDS: 6.24 Total: -14.41 kcal Atomic # 7 Polarization: -100.84 SS G_CDS: -7.02 Total: -107.86 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -2.10 Total: -44.31 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 2.06 Total: 41.55 kcal Total: -67.98 -0.76 -68.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613629293.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.314 kcal (2) G-P(sol) polarization free energy of solvation -67.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds