Wall clock time and date at job start Wed Apr 1 2020 05:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21257 * 120.00004 * 2 1 4 4 C 1.47186 * 120.00128 * 179.97438 * 2 1 3 5 5 C 1.39891 * 120.13532 * 359.97438 * 4 2 1 6 6 C 1.37912 * 119.96694 * 179.97438 * 5 4 2 7 7 C 1.38299 * 120.24890 * 0.25767 * 6 5 4 8 8 C 1.38997 * 120.28081 * 359.49314 * 7 6 5 9 9 N 1.39959 * 119.98612 * 180.23332 * 8 7 6 10 10 C 1.34771 * 120.00335 * 145.17126 * 9 8 7 11 11 O 1.21290 * 119.99441 * 4.60692 * 10 9 8 12 12 C 1.50697 * 120.00622 * 184.61254 * 10 9 8 13 13 N 1.46895 * 109.47738 * 179.97438 * 12 10 9 14 14 C 1.46962 * 110.99632 * 293.79827 * 13 12 10 15 15 C 1.53051 * 109.36160 * 176.80776 * 14 13 12 16 16 N 1.46952 * 109.36590 * 58.40202 * 15 14 13 17 17 C 1.46895 * 111.00496 * 176.81015 * 16 15 14 18 18 C 1.50699 * 109.47123 * 293.80014 * 17 16 15 19 19 H 1.08004 * 119.99979 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00508 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99254 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47415 * 90.00457 * 22 20 18 24 24 H 1.48509 * 109.46908 * 209.99976 * 22 20 18 25 25 H 1.48494 * 109.47225 * 330.00220 * 22 20 18 26 26 C 1.46958 * 110.88248 * 300.68216 * 16 15 14 27 27 C 1.46952 * 111.00496 * 169.99770 * 13 12 10 28 28 C 1.38565 * 120.02420 * 0.50599 * 8 7 6 29 29 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46991 * 300.00062 * 1 2 3 31 31 H 1.09002 * 109.47180 * 60.00147 * 1 2 3 32 32 H 1.07998 * 120.01959 * 0.02562 * 5 4 2 33 33 H 1.07991 * 119.87426 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.85783 * 179.71688 * 7 6 5 35 35 H 0.97002 * 119.99766 * 325.16759 * 9 8 7 36 36 H 1.09000 * 109.46645 * 299.99840 * 12 10 9 37 37 H 1.09002 * 109.47097 * 59.99123 * 12 10 9 38 38 H 1.08990 * 109.49059 * 296.77569 * 14 13 12 39 39 H 1.09007 * 109.48650 * 56.84648 * 14 13 12 40 40 H 1.09004 * 109.49264 * 298.43555 * 15 14 13 41 41 H 1.09000 * 109.48912 * 178.37094 * 15 14 13 42 42 H 1.09000 * 109.47258 * 53.79625 * 17 16 15 43 43 H 1.08997 * 109.47575 * 173.80098 * 17 16 15 44 44 H 0.97001 * 119.99650 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.48460 * 299.34952 * 26 16 15 46 46 H 1.08997 * 109.51113 * 179.29706 * 26 16 15 47 47 H 1.09000 * 109.48953 * 303.15851 * 27 13 12 48 48 H 1.09004 * 109.48577 * 63.21917 * 27 13 12 49 49 H 1.08003 * 120.12495 * 179.77226 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6801 0.0017 7 6 3.6224 -3.6820 0.0060 8 6 4.3250 -2.4827 -0.0003 9 7 5.7245 -2.4919 -0.0008 10 6 6.4044 -1.5416 -0.6724 11 8 5.8066 -0.6313 -1.2064 12 6 7.9073 -1.6100 -0.7601 13 7 8.4049 -0.4687 -1.5395 14 6 7.9717 -0.5591 -2.9409 15 6 8.4418 0.6849 -3.6986 16 7 9.9050 0.7866 -3.6082 17 6 10.4026 1.9280 -4.3876 18 6 10.1535 1.6822 -5.8534 19 1 9.6739 0.7691 -6.1739 20 6 10.5379 2.6228 -6.7853 21 7 11.1224 3.7344 -6.3950 22 14 10.2284 2.3183 -8.6021 23 1 8.8957 2.8571 -8.9744 24 1 11.2782 2.9973 -9.4036 25 1 10.2655 0.8587 -8.8728 26 6 10.3382 0.8769 -2.2068 27 6 9.8681 -0.3669 -1.4491 28 6 3.6403 -1.2780 -0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.4664 -2.4907 0.0017 33 1 1.7002 -4.6157 0.0029 34 1 4.1588 -4.6194 0.0106 35 1 6.2052 -3.1822 0.4822 36 1 8.3316 -1.5778 0.2434 37 1 8.2008 -2.5390 -1.2489 38 1 8.4043 -1.4486 -3.3986 39 1 6.8842 -0.6206 -2.9821 40 1 7.9877 1.5725 -3.2578 41 1 8.1466 0.6066 -4.7449 42 1 9.8822 2.8342 -4.0776 43 1 11.4724 2.0466 -4.2158 44 1 11.3931 4.3960 -7.0506 45 1 9.9057 1.7666 -1.7491 46 1 11.4256 0.9387 -2.1652 47 1 10.1633 -0.2886 -0.4028 48 1 10.3222 -1.2545 -1.8899 49 1 4.1845 -0.3452 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000677707838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:10 Heat of formation + Delta-G solvation = -16.747242 kcal Electronic energy + Delta-G solvation = -29632.016583 eV Core-core repulsion = 25559.755067 eV Total energy + Delta-G solvation = -4072.261516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.98017 -39.82842 -38.69834 -37.91774 -35.19175 -34.81549 -32.46602 -31.99519 -30.96909 -30.36863 -29.70263 -28.62822 -26.50406 -24.31705 -24.16601 -23.05427 -22.82706 -21.36318 -20.61052 -20.22468 -19.15348 -17.97270 -17.25659 -16.74616 -16.25162 -16.03829 -15.79557 -15.48716 -15.43294 -15.23003 -14.64369 -14.54928 -14.43040 -14.21501 -14.08845 -13.88639 -13.49637 -13.24478 -13.07775 -12.94256 -12.79246 -12.42022 -12.21559 -12.06886 -12.01126 -11.81286 -11.65234 -11.14519 -10.81369 -10.76784 -10.66860 -10.62095 -10.43949 -10.25073 -10.01287 -9.89281 -9.55553 -9.30782 -9.12526 -8.54419 -8.38961 -8.16689 -7.16685 -5.97548 -3.98623 0.31588 0.96968 2.05699 2.44163 2.62770 3.35740 3.41341 3.45593 3.46259 3.72446 4.05231 4.40294 4.46962 4.51014 4.56308 4.63623 4.77958 4.97695 4.99763 5.00830 5.07492 5.09434 5.11412 5.26621 5.36892 5.38423 5.48732 5.57813 5.58047 5.75494 5.84334 5.90123 5.93928 5.95917 6.00161 6.08301 6.19414 6.25880 6.46881 6.60365 6.65954 6.82044 6.95039 7.17827 7.21194 7.28503 7.39950 7.44319 7.85299 7.93895 8.14623 8.26710 8.61248 9.08761 9.65242 11.13442 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002227 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.688188 B =12567.671273 C =13645.467448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.390 3.610 3 O -0.448 6.448 4 C -0.154 4.154 5 C -0.095 4.095 6 C -0.114 4.114 7 C -0.118 4.118 8 C 0.139 3.861 9 N -0.681 5.681 10 C 0.510 3.490 11 O -0.487 6.487 12 C 0.040 3.960 13 N -0.523 5.523 14 C 0.054 3.946 15 C 0.070 3.930 16 N -0.540 5.540 17 C 0.193 3.807 18 C -0.506 4.506 19 H 0.062 0.938 20 C 0.054 3.946 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.273 1.273 26 C 0.056 3.944 27 C 0.063 3.937 28 C -0.064 4.064 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.130 0.870 35 H 0.411 0.589 36 H 0.105 0.895 37 H 0.066 0.934 38 H 0.034 0.966 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.086 0.914 42 H -0.008 1.008 43 H 0.030 0.970 44 H 0.261 0.739 45 H 0.032 0.968 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.041 0.959 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.230 -19.229 18.998 32.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.267 3.733 3 O -0.322 6.322 4 C -0.155 4.155 5 C -0.113 4.113 6 C -0.133 4.133 7 C -0.138 4.138 8 C 0.045 3.955 9 N -0.328 5.328 10 C 0.298 3.702 11 O -0.358 6.358 12 C -0.092 4.092 13 N -0.248 5.248 14 C -0.073 4.073 15 C -0.058 4.058 16 N -0.265 5.265 17 C 0.068 3.932 18 C -0.545 4.545 19 H 0.080 0.920 20 C -0.147 4.147 21 N -0.538 5.538 22 Si 0.725 3.275 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.198 1.198 26 C -0.073 4.073 27 C -0.065 4.065 28 C -0.085 4.085 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.247 0.753 36 H 0.123 0.877 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.104 0.896 42 H 0.010 0.990 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -18.155 -17.787 18.481 31.425 hybrid contribution 0.156 -0.604 -0.746 0.973 sum -17.999 -18.391 17.735 31.252 Atomic orbital electron populations 1.22235 0.93671 1.04718 1.05073 1.22513 0.91657 0.87644 0.71438 1.90603 1.71980 1.34221 1.35405 1.20474 0.94008 0.95075 1.05986 1.21477 1.00177 0.91413 0.98266 1.20903 0.93396 0.98268 1.00709 1.21169 0.94744 0.96629 1.01297 1.17672 0.83034 0.93687 1.01109 1.43598 1.04262 1.32028 1.52956 1.21002 0.90493 0.81207 0.77544 1.90757 1.69753 1.31975 1.43333 1.21897 0.90802 0.95179 1.01281 1.61896 1.11559 1.38931 1.12449 1.22431 1.00755 0.98430 0.85721 1.21941 0.88743 0.95145 1.00000 1.62313 1.09846 1.46469 1.07877 1.19696 0.95315 0.85672 0.92489 1.21154 1.38665 1.03864 0.90777 0.91974 1.24993 0.95383 0.95104 0.99191 1.69964 1.41160 1.08578 1.34130 0.86505 0.77802 0.78309 0.84847 1.20718 1.21282 1.19837 1.22047 0.99630 0.95390 0.90210 1.22200 0.85822 0.98859 0.99599 1.21669 0.93179 0.98856 0.94763 0.89810 0.88768 0.88656 0.84771 0.84975 0.85211 0.75328 0.87748 0.91640 0.94822 0.89600 0.95060 0.89621 0.99017 0.95235 0.92966 0.94990 0.90854 0.91050 0.94092 0.82925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.22 10.19 36.00 0.37 -0.85 16 2 C 0.39 4.23 7.23 -30.68 -0.22 4.01 16 3 O -0.45 -6.92 17.09 5.58 0.10 -6.83 16 4 C -0.15 -1.59 5.87 -105.09 -0.62 -2.20 16 5 C -0.09 -0.65 9.45 -39.08 -0.37 -1.02 16 6 C -0.11 -0.70 10.02 -39.68 -0.40 -1.09 16 7 C -0.12 -0.82 9.96 -39.28 -0.39 -1.21 16 8 C 0.14 1.37 6.29 -83.74 -0.53 0.84 16 9 N -0.68 -5.87 5.34 -9.90 -0.05 -5.92 16 10 C 0.51 6.21 7.37 -10.99 -0.08 6.13 16 11 O -0.49 -8.23 11.77 5.55 0.07 -8.16 16 12 C 0.04 0.43 5.45 -4.98 -0.03 0.40 16 13 N -0.52 -8.08 4.45 -235.92 -1.05 -9.13 16 14 C 0.05 0.96 5.26 -3.76 -0.02 0.94 16 15 C 0.07 1.52 5.43 -3.77 -0.02 1.50 16 16 N -0.54 -12.26 4.70 -235.92 -1.11 -13.37 16 17 C 0.19 5.25 4.72 -4.98 -0.02 5.23 16 18 C -0.51 -14.67 8.47 -34.44 -0.29 -14.96 16 19 H 0.06 1.78 7.13 -52.48 -0.37 1.41 16 20 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 21 N -0.90 -27.44 13.29 55.43 0.74 -26.70 16 22 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.06 1.06 5.61 -3.77 -0.02 1.04 16 27 C 0.06 0.94 5.61 -3.77 -0.02 0.91 16 28 C -0.06 -0.80 8.24 -38.90 -0.32 -1.12 16 29 H 0.08 0.29 5.60 -51.93 -0.29 0.00 16 30 H 0.09 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.13 0.51 5.92 -52.49 -0.31 0.20 16 33 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.13 0.57 8.06 -52.48 -0.42 0.14 16 35 H 0.41 1.90 8.82 -40.82 -0.36 1.54 16 36 H 0.10 0.83 8.03 -51.93 -0.42 0.42 16 37 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.09 1.56 5.85 -51.93 -0.30 1.26 16 40 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 1.96 6.79 -51.93 -0.35 1.61 16 42 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 43 H 0.03 0.84 8.03 -51.93 -0.42 0.43 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.07 1.32 8.07 -51.93 -0.42 0.90 16 47 H 0.07 0.86 8.07 -51.93 -0.42 0.44 16 48 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 49 H 0.15 2.40 5.81 -52.48 -0.30 2.10 16 LS Contribution 395.74 15.07 5.96 5.96 Total: -1.00 -37.29 395.74 -10.78 -48.07 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -7.33 Total: -1.17 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -3.08 Total: 0.04 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.47 Total: -55.13 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.16 Total: -14.99 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -37.29 -10.78 -48.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000677707838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.321 kcal (2) G-P(sol) polarization free energy of solvation -37.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds