Wall clock time and date at job start Wed Apr 1 2020 05:20:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21257 * 120.00004 * 2 1 4 4 C 1.47186 * 120.00128 * 179.97438 * 2 1 3 5 5 C 1.39891 * 120.13532 * 359.97438 * 4 2 1 6 6 C 1.37912 * 119.96694 * 179.97438 * 5 4 2 7 7 C 1.38299 * 120.24890 * 0.25767 * 6 5 4 8 8 C 1.38997 * 120.28081 * 359.49314 * 7 6 5 9 9 N 1.39959 * 119.98612 * 180.23332 * 8 7 6 10 10 C 1.34771 * 120.00335 * 145.17126 * 9 8 7 11 11 O 1.21290 * 119.99441 * 4.60692 * 10 9 8 12 12 C 1.50697 * 120.00622 * 184.61254 * 10 9 8 13 13 N 1.46895 * 109.47738 * 179.97438 * 12 10 9 14 14 C 1.46962 * 110.99632 * 293.79827 * 13 12 10 15 15 C 1.53051 * 109.36160 * 176.80776 * 14 13 12 16 16 N 1.46952 * 109.36590 * 58.40202 * 15 14 13 17 17 C 1.46895 * 111.00496 * 176.81015 * 16 15 14 18 18 C 1.50699 * 109.47123 * 293.80014 * 17 16 15 19 19 H 1.08004 * 119.99979 * 359.97438 * 18 17 16 20 20 C 1.37880 * 120.00508 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99254 * 0.02562 * 20 18 17 22 22 Si 1.86793 * 120.00302 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47415 * 90.00457 * 22 20 18 24 24 H 1.48509 * 109.46908 * 209.99976 * 22 20 18 25 25 H 1.48494 * 109.47225 * 330.00220 * 22 20 18 26 26 C 1.46958 * 110.88248 * 300.68216 * 16 15 14 27 27 C 1.46952 * 111.00496 * 169.99770 * 13 12 10 28 28 C 1.38565 * 120.02420 * 0.50599 * 8 7 6 29 29 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46991 * 300.00062 * 1 2 3 31 31 H 1.09002 * 109.47180 * 60.00147 * 1 2 3 32 32 H 1.07998 * 120.01959 * 0.02562 * 5 4 2 33 33 H 1.07991 * 119.87426 * 179.97438 * 6 5 4 34 34 H 1.08004 * 119.85783 * 179.71688 * 7 6 5 35 35 H 0.97002 * 119.99766 * 325.16759 * 9 8 7 36 36 H 1.09000 * 109.46645 * 299.99840 * 12 10 9 37 37 H 1.09002 * 109.47097 * 59.99123 * 12 10 9 38 38 H 1.08990 * 109.49059 * 296.77569 * 14 13 12 39 39 H 1.09007 * 109.48650 * 56.84648 * 14 13 12 40 40 H 1.09004 * 109.49264 * 298.43555 * 15 14 13 41 41 H 1.09000 * 109.48912 * 178.37094 * 15 14 13 42 42 H 1.09000 * 109.47258 * 53.79625 * 17 16 15 43 43 H 1.08997 * 109.47575 * 173.80098 * 17 16 15 44 44 H 0.97001 * 119.99650 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.48460 * 299.34952 * 26 16 15 46 46 H 1.08997 * 109.51113 * 179.29706 * 26 16 15 47 47 H 1.09000 * 109.48953 * 303.15851 * 27 13 12 48 48 H 1.09004 * 109.48577 * 63.21917 * 27 13 12 49 49 H 1.08003 * 120.12495 * 179.77226 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0501 0.0000 4 6 2.2429 -1.2746 0.0006 5 6 1.5463 -2.4878 0.0017 6 6 2.2394 -3.6801 0.0017 7 6 3.6224 -3.6820 0.0060 8 6 4.3250 -2.4827 -0.0003 9 7 5.7245 -2.4919 -0.0008 10 6 6.4044 -1.5416 -0.6724 11 8 5.8066 -0.6313 -1.2064 12 6 7.9073 -1.6100 -0.7601 13 7 8.4049 -0.4687 -1.5395 14 6 7.9717 -0.5591 -2.9409 15 6 8.4418 0.6849 -3.6986 16 7 9.9050 0.7866 -3.6082 17 6 10.4026 1.9280 -4.3876 18 6 10.1535 1.6822 -5.8534 19 1 9.6739 0.7691 -6.1739 20 6 10.5379 2.6228 -6.7853 21 7 11.1224 3.7344 -6.3950 22 14 10.2284 2.3183 -8.6021 23 1 8.8957 2.8571 -8.9744 24 1 11.2782 2.9973 -9.4036 25 1 10.2655 0.8587 -8.8728 26 6 10.3382 0.8769 -2.2068 27 6 9.8681 -0.3669 -1.4491 28 6 3.6403 -1.2780 -0.0003 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5138 -0.8900 32 1 0.4664 -2.4907 0.0017 33 1 1.7002 -4.6157 0.0029 34 1 4.1588 -4.6194 0.0106 35 1 6.2052 -3.1822 0.4822 36 1 8.3316 -1.5778 0.2434 37 1 8.2008 -2.5390 -1.2489 38 1 8.4043 -1.4486 -3.3986 39 1 6.8842 -0.6206 -2.9821 40 1 7.9877 1.5725 -3.2578 41 1 8.1466 0.6066 -4.7449 42 1 9.8822 2.8342 -4.0776 43 1 11.4724 2.0466 -4.2158 44 1 11.3931 4.3960 -7.0506 45 1 9.9057 1.7666 -1.7491 46 1 11.4256 0.9387 -2.1652 47 1 10.1633 -0.2886 -0.4028 48 1 10.3222 -1.2545 -1.8899 49 1 4.1845 -0.3452 -0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000677707838.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:08 Heat of formation + Delta-G solvation = -46.015341 kcal Electronic energy + Delta-G solvation = -29633.285743 eV Core-core repulsion = 25559.755067 eV Total energy + Delta-G solvation = -4073.530676 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.79850 -40.75422 -39.93588 -38.91646 -36.57417 -35.86452 -34.57796 -32.70054 -31.88944 -31.72615 -30.72988 -29.75556 -28.13154 -25.83606 -24.87448 -24.56609 -23.74738 -23.16034 -21.45403 -20.99045 -20.68189 -18.72875 -18.54447 -18.09699 -17.52264 -17.08953 -16.84144 -16.49323 -16.39973 -16.21273 -16.06782 -15.87247 -15.70744 -15.56143 -15.24200 -14.94686 -14.85101 -14.58946 -14.28369 -13.98418 -13.77283 -13.48630 -13.32331 -13.11272 -13.05610 -12.90789 -12.76073 -12.70892 -12.47897 -12.46619 -12.30618 -12.15963 -11.99414 -11.63014 -11.49594 -11.22134 -10.82457 -10.74713 -10.64831 -9.98284 -9.36624 -9.21708 -9.09744 -8.24013 -6.34766 -0.37300 0.29922 1.32209 1.37542 1.39936 1.51441 1.60386 1.87988 2.37477 2.81662 2.90892 3.07105 3.07850 3.25517 3.66680 3.90792 3.93796 4.03323 4.09024 4.16096 4.16666 4.22878 4.30328 4.34280 4.45443 4.45658 4.49223 4.50959 4.61369 4.65506 4.71449 4.84041 4.91347 4.93815 4.98287 5.03416 5.07236 5.15998 5.23355 5.27503 5.33647 5.38458 5.46963 5.59710 5.89431 5.94840 5.96999 6.02264 6.26238 6.43530 6.52229 6.57911 6.80306 7.15398 7.34737 8.87580 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012617 B = 0.002227 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2218.688188 B =12567.671273 C =13645.467448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.384 3.616 3 O -0.516 6.516 4 C -0.182 4.182 5 C -0.079 4.079 6 C -0.108 4.108 7 C -0.103 4.103 8 C 0.118 3.882 9 N -0.661 5.661 10 C 0.506 3.494 11 O -0.547 6.547 12 C 0.044 3.956 13 N -0.547 5.547 14 C 0.074 3.926 15 C 0.074 3.926 16 N -0.539 5.539 17 C 0.208 3.792 18 C -0.525 4.525 19 H 0.062 0.938 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.278 1.278 25 H -0.262 1.262 26 C 0.049 3.951 27 C 0.075 3.925 28 C -0.101 4.101 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.175 0.825 34 H 0.166 0.834 35 H 0.432 0.568 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.000 1.000 41 H 0.064 0.936 42 H -0.047 1.047 43 H 0.010 0.990 44 H 0.265 0.735 45 H 0.012 0.988 46 H 0.081 0.919 47 H 0.110 0.890 48 H 0.055 0.945 49 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.789 -24.347 19.792 37.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.266 3.734 3 O -0.395 6.395 4 C -0.183 4.183 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.123 4.123 8 C 0.024 3.976 9 N -0.310 5.310 10 C 0.294 3.706 11 O -0.422 6.422 12 C -0.086 4.086 13 N -0.272 5.272 14 C -0.054 4.054 15 C -0.055 4.055 16 N -0.264 5.264 17 C 0.081 3.919 18 C -0.563 4.563 19 H 0.080 0.920 20 C -0.199 4.199 21 N -0.575 5.575 22 Si 0.797 3.203 23 H -0.201 1.201 24 H -0.203 1.203 25 H -0.186 1.186 26 C -0.080 4.080 27 C -0.052 4.052 28 C -0.122 4.122 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.190 0.810 33 H 0.193 0.807 34 H 0.183 0.817 35 H 0.272 0.728 36 H 0.160 0.840 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.019 0.981 41 H 0.082 0.918 42 H -0.030 1.030 43 H 0.028 0.972 44 H 0.074 0.926 45 H 0.031 0.969 46 H 0.099 0.901 47 H 0.129 0.871 48 H 0.073 0.927 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.727 -22.995 19.336 35.941 hybrid contribution 0.580 0.932 -0.882 1.408 sum -19.147 -22.063 18.454 34.553 Atomic orbital electron populations 1.22278 0.89609 1.07246 1.05694 1.23440 0.93995 0.87079 0.68926 1.90577 1.73646 1.36332 1.38970 1.20649 0.93464 0.96424 1.07778 1.21905 1.01989 0.90100 0.95724 1.21480 0.93193 0.99486 0.98431 1.21605 0.95475 0.96481 0.98770 1.17864 0.83448 0.93921 1.02367 1.43349 1.04100 1.31514 1.51999 1.21374 0.91251 0.80901 0.77061 1.90767 1.70886 1.34453 1.46107 1.22042 0.89589 0.94399 1.02576 1.61724 1.12061 1.42307 1.11151 1.22077 1.00130 0.96049 0.87134 1.21867 0.87980 0.96303 0.99310 1.62275 1.10290 1.43740 1.10051 1.19366 0.93632 0.85871 0.92995 1.21440 1.38975 1.04123 0.91796 0.91992 1.25980 0.94765 0.94612 1.04526 1.70098 1.41878 1.09523 1.36033 0.85333 0.77909 0.78792 0.78291 1.20086 1.20292 1.18606 1.22241 1.00128 0.97366 0.88218 1.22141 0.85394 0.96619 1.01087 1.21487 0.94509 0.98225 0.97953 0.86286 0.87634 0.88259 0.81044 0.80716 0.81667 0.72801 0.84024 0.88490 0.93755 0.90398 0.98132 0.91796 1.02961 0.97207 0.92602 0.96922 0.90113 0.87146 0.92726 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.10 10.19 71.23 0.73 -1.37 16 2 C 0.38 8.92 7.23 28.04 0.20 9.12 16 3 O -0.52 -18.09 17.09 -2.96 -0.05 -18.14 16 4 C -0.18 -3.82 5.87 -20.17 -0.12 -3.94 16 5 C -0.08 -0.83 9.45 22.59 0.21 -0.62 16 6 C -0.11 -0.80 10.02 22.21 0.22 -0.57 16 7 C -0.10 -1.05 9.96 22.47 0.22 -0.83 16 8 C 0.12 2.22 6.29 38.10 0.24 2.46 16 9 N -0.66 -10.43 5.34 -303.62 -1.62 -12.05 16 10 C 0.51 12.19 7.37 87.66 0.65 12.84 16 11 O -0.55 -19.88 11.77 -3.06 -0.04 -19.91 16 12 C 0.04 0.84 5.45 85.56 0.47 1.30 16 13 N -0.55 -16.50 4.45 -900.31 -4.00 -20.50 16 14 C 0.07 2.68 5.26 86.31 0.45 3.13 16 15 C 0.07 3.41 5.43 86.31 0.47 3.88 16 16 N -0.54 -25.61 4.70 -900.32 -4.23 -29.85 16 17 C 0.21 12.02 4.72 85.56 0.40 12.42 16 18 C -0.53 -31.67 8.47 25.60 0.22 -31.46 16 19 H 0.06 3.66 7.13 -2.91 -0.02 3.64 16 20 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 21 N -0.93 -59.00 13.29 21.45 0.28 -58.71 16 22 Si 0.97 46.36 29.54 68.60 2.03 48.38 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 25 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 26 C 0.05 1.90 5.61 86.31 0.48 2.38 16 27 C 0.07 2.08 5.61 86.31 0.48 2.56 16 28 C -0.10 -2.70 8.24 22.71 0.19 -2.52 16 29 H 0.12 0.38 5.60 -2.39 -0.01 0.36 16 30 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.17 0.42 5.92 -2.91 -0.02 0.40 16 33 H 0.18 -0.09 8.06 -2.92 -0.02 -0.11 16 34 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 35 H 0.43 2.61 8.82 -92.71 -0.82 1.80 16 36 H 0.14 1.66 8.03 -2.39 -0.02 1.64 16 37 H 0.10 1.32 8.12 -2.39 -0.02 1.30 16 38 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 2.98 5.85 -2.38 -0.01 2.96 16 40 H 0.00 0.02 8.14 -2.38 -0.02 0.00 16 41 H 0.06 3.14 6.79 -2.39 -0.02 3.13 16 42 H -0.05 -3.04 8.12 -2.39 -0.02 -3.06 16 43 H 0.01 0.60 8.03 -2.39 -0.02 0.58 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 46 H 0.08 2.96 8.07 -2.39 -0.02 2.94 16 47 H 0.11 2.26 8.07 -2.39 -0.02 2.25 16 48 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 49 H 0.10 3.78 5.81 -2.91 -0.02 3.76 16 Total: -1.00 -93.16 395.74 -1.49 -94.65 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.15 Total: 6.92 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 5.98 Total: 9.20 kcal Atomic # 7 Polarization: -111.54 SS G_CDS: -9.57 Total: -121.10 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.09 Total: -38.05 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -93.16 -1.49 -94.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000677707838.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.636 kcal (2) G-P(sol) polarization free energy of solvation -93.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds