Wall clock time and date at job start Wed Apr 1 2020 04:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47460 * 2 1 4 4 C 1.46904 * 110.99822 * 73.44191 * 3 2 1 5 5 C 1.50693 * 109.47187 * 63.21886 * 4 3 2 6 6 O 1.21284 * 120.00198 * 354.19798 * 5 4 3 7 7 N 1.34773 * 120.00146 * 173.91432 * 5 4 3 8 8 C 1.46501 * 120.00042 * 180.27903 * 7 5 4 9 9 C 1.50706 * 109.46979 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99985 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99910 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00204 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46685 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47066 * 120.00133 * 13 11 9 16 16 H 1.48499 * 109.47270 * 240.00622 * 13 11 9 17 17 C 1.46900 * 111.00627 * 197.39729 * 3 2 1 18 18 H 1.09004 * 110.43451 * 287.54295 * 17 3 2 19 19 C 1.54632 * 110.48599 * 50.22100 * 17 3 2 20 20 C 1.54479 * 101.76394 * 143.47808 * 19 17 3 21 21 N 1.46762 * 105.47485 * 334.58759 * 20 19 17 22 22 C 1.39922 * 124.35074 * 196.99259 * 21 20 19 23 23 C 1.38866 * 120.07390 * 185.86149 * 22 21 20 24 24 C 1.38114 * 119.93154 * 179.67661 * 23 22 21 25 25 C 1.38282 * 120.06797 * 0.62645 * 24 23 22 26 26 C 1.38283 * 120.13953 * 359.67024 * 25 24 23 27 27 C 1.38110 * 120.07010 * 0.02562 * 26 25 24 28 28 C 1.34421 * 111.29939 * 17.01431 * 21 20 19 29 29 O 1.21291 * 124.93881 * 179.55936 * 28 21 20 30 30 H 1.08997 * 109.47342 * 62.50487 * 1 2 3 31 31 H 1.08996 * 109.47080 * 182.51518 * 1 2 3 32 32 H 1.09007 * 109.46760 * 302.50963 * 1 2 3 33 33 H 1.09001 * 109.46788 * 240.00517 * 2 1 3 34 34 H 1.09004 * 109.47548 * 120.00319 * 2 1 3 35 35 H 1.09000 * 109.47117 * 303.21542 * 4 3 2 36 36 H 1.08997 * 109.46962 * 183.22264 * 4 3 2 37 37 H 0.97001 * 119.99947 * 0.28083 * 7 5 4 38 38 H 1.09000 * 109.47062 * 299.99999 * 8 7 5 39 39 H 1.08991 * 109.47446 * 60.00285 * 8 7 5 40 40 H 0.96999 * 120.00243 * 179.97438 * 12 11 9 41 41 H 1.08998 * 110.96679 * 261.60282 * 19 17 3 42 42 H 1.09006 * 110.96332 * 25.35896 * 19 17 3 43 43 H 1.09000 * 110.24665 * 215.58338 * 20 19 17 44 44 H 1.08997 * 110.23936 * 93.58724 * 20 19 17 45 45 H 1.08006 * 120.03363 * 359.97438 * 23 22 21 46 46 H 1.07996 * 119.96706 * 180.34080 * 24 23 22 47 47 H 1.08000 * 119.92646 * 179.70082 * 25 24 23 48 48 H 1.08005 * 119.96129 * 180.02562 * 26 25 24 49 49 H 1.08007 * 120.03023 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8267 2.0115 1.3146 5 6 2.6461 1.2788 2.3455 6 8 3.2404 0.2666 2.0402 7 7 2.7230 1.7514 3.6053 8 6 3.5245 1.0424 4.6059 9 6 3.4437 1.7713 5.9225 10 1 2.8540 2.6722 6.0057 11 6 4.1218 1.2873 7.0211 12 7 4.8395 0.1899 6.9200 13 14 4.0212 2.1903 8.6533 14 1 3.1552 3.3875 8.5039 15 1 3.4452 1.2886 9.6831 16 1 5.3825 2.6124 9.0703 17 6 3.4291 1.4451 -0.4100 18 1 4.0722 1.0575 0.3801 19 6 3.6449 0.6569 -1.7227 20 6 4.7001 1.5260 -2.4422 21 7 4.5238 2.8804 -1.9052 22 6 5.0260 4.0397 -2.5066 23 6 4.9127 5.2638 -1.8607 24 6 5.4154 6.4052 -2.4540 25 6 6.0196 6.3320 -3.6957 26 6 6.1286 5.1155 -4.3442 27 6 5.6334 3.9695 -3.7534 28 6 3.8183 2.8641 -0.7611 29 8 3.5355 3.8446 -0.1054 30 1 -0.3634 0.4744 -0.9115 31 1 -0.3633 -1.0266 0.0451 32 1 -0.3633 0.5524 0.8667 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 0.7726 1.9649 1.5881 36 1 2.1449 3.0531 1.2708 37 1 2.2477 2.5609 3.8495 38 1 3.1407 0.0295 4.7276 39 1 4.5626 1.0004 4.2766 40 1 5.3169 -0.1504 7.6927 41 1 4.0341 -0.3407 -1.5191 42 1 2.7228 0.6035 -2.3017 43 1 4.5234 1.5206 -3.5177 44 1 5.7031 1.1606 -2.2221 45 1 4.4361 5.3224 -0.8933 46 1 5.3325 7.3566 -1.9498 47 1 6.4076 7.2267 -4.1597 48 1 6.6014 5.0616 -5.3138 49 1 5.7193 3.0197 -4.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731848898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:07 Heat of formation + Delta-G solvation = -21.657362 kcal Electronic energy + Delta-G solvation = -30710.993807 eV Core-core repulsion = 26638.519372 eV Total energy + Delta-G solvation = -4072.474435 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.41568 -39.63570 -38.54390 -36.87877 -36.24939 -34.16632 -32.72301 -32.37925 -31.08165 -30.64043 -29.16829 -28.26521 -26.92921 -25.38405 -23.63783 -22.96544 -22.61339 -21.78193 -20.55893 -19.93865 -19.51746 -17.88169 -17.29988 -17.00793 -16.51347 -15.99931 -15.78146 -15.40670 -15.19024 -14.81316 -14.72158 -14.58694 -14.34751 -14.12817 -13.88643 -13.69680 -13.53621 -13.36368 -12.87670 -12.84146 -12.68333 -12.27094 -12.13089 -12.00149 -11.81538 -11.75709 -11.64653 -11.44031 -11.22372 -11.07570 -10.95500 -10.90598 -10.53672 -10.39224 -10.34891 -9.86003 -9.53866 -9.39840 -9.10713 -8.75511 -8.08030 -7.93242 -7.91764 -6.18877 -4.25518 1.12067 1.25157 2.44575 2.62685 3.22550 3.25512 3.29896 3.33354 3.69859 3.86285 4.07434 4.10178 4.27213 4.37939 4.72253 4.73658 4.79618 4.81883 4.99545 5.08950 5.17514 5.19106 5.25817 5.36362 5.38511 5.41518 5.44913 5.50744 5.57469 5.61571 5.69495 5.80914 5.87190 5.90470 6.00271 6.06131 6.11681 6.22919 6.38225 6.40355 6.44534 6.87188 6.89738 6.94185 7.04363 7.25959 7.39151 7.47323 7.64111 7.94201 7.96964 8.57395 8.73525 9.02408 9.41139 10.91350 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.002797 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.033012 B =10009.719102 C =11669.098281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.025 3.975 3 N -0.495 5.495 4 C 0.016 3.984 5 C 0.471 3.529 6 O -0.563 6.563 7 N -0.706 5.706 8 C 0.249 3.751 9 C -0.542 4.542 10 H 0.064 0.936 11 C 0.063 3.937 12 N -0.886 5.886 13 Si 0.903 3.097 14 H -0.271 1.271 15 H -0.282 1.282 16 H -0.282 1.282 17 C 0.039 3.961 18 H 0.118 0.882 19 C -0.124 4.124 20 C 0.099 3.901 21 N -0.561 5.561 22 C 0.172 3.828 23 C -0.158 4.158 24 C -0.091 4.091 25 C -0.152 4.152 26 C -0.094 4.094 27 C -0.163 4.163 28 C 0.532 3.468 29 O -0.499 6.499 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.392 0.608 38 H 0.026 0.974 39 H 0.025 0.975 40 H 0.265 0.735 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.156 0.844 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.124 0.876 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.216 4.918 -24.072 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 N -0.218 5.218 4 C -0.115 4.115 5 C 0.256 3.744 6 O -0.446 6.446 7 N -0.353 5.353 8 C 0.128 3.872 9 C -0.581 4.581 10 H 0.082 0.918 11 C -0.140 4.140 12 N -0.524 5.524 13 Si 0.731 3.269 14 H -0.196 1.196 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.072 4.072 18 H 0.135 0.865 19 C -0.162 4.162 20 C -0.024 4.024 21 N -0.284 5.284 22 C 0.078 3.922 23 C -0.178 4.178 24 C -0.109 4.109 25 C -0.171 4.171 26 C -0.113 4.113 27 C -0.183 4.183 28 C 0.321 3.679 29 O -0.373 6.373 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.138 0.862 37 H 0.225 0.775 38 H 0.044 0.956 39 H 0.043 0.957 40 H 0.075 0.925 41 H 0.116 0.884 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.173 0.827 46 H 0.143 0.857 47 H 0.138 0.862 48 H 0.142 0.858 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.121 4.832 -24.117 24.687 hybrid contribution 0.376 0.312 1.633 1.704 sum -1.745 5.144 -22.484 23.131 Atomic orbital electron populations 1.21761 0.95198 1.01266 1.01972 1.22513 0.95460 0.88551 1.03689 1.62428 1.14883 1.19085 1.25432 1.22557 1.01164 1.01065 0.86725 1.21667 0.82664 0.85676 0.84385 1.90532 1.48015 1.26043 1.79962 1.46597 1.49623 1.28730 1.10349 1.19100 0.90564 0.92568 0.84951 1.21274 1.31408 1.11020 0.94356 0.91805 1.24954 0.94772 0.94989 0.99317 1.69980 1.30454 1.21106 1.30860 0.86359 0.77991 0.79631 0.82951 1.19560 1.20782 1.20773 1.22556 0.93232 0.92282 0.99168 0.86531 1.22771 0.99539 0.99015 0.94893 1.22273 1.00478 0.80065 0.99579 1.45756 1.51977 1.06404 1.24280 1.17841 0.96048 0.85609 0.92656 1.21710 1.02614 0.90775 1.02696 1.21080 0.96687 0.98084 0.95069 1.21107 1.02093 0.97801 0.96087 1.20895 0.98764 0.92098 0.99516 1.20752 1.03560 0.99518 0.94502 1.20982 0.76217 0.91547 0.79182 1.90547 1.54322 1.39193 1.53226 0.92523 0.92383 0.92820 0.90831 0.90256 0.87806 0.86227 0.77489 0.95575 0.95684 0.92521 0.88421 0.88689 0.89483 0.90011 0.82673 0.85697 0.86167 0.85840 0.85811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 10.03 37.16 0.37 -1.22 16 2 C 0.02 0.32 5.13 -3.83 -0.02 0.30 16 3 N -0.49 -6.88 4.50 -228.10 -1.03 -7.91 16 4 C 0.02 0.25 5.57 -4.98 -0.03 0.22 16 5 C 0.47 9.19 7.00 -10.99 -0.08 9.11 16 6 O -0.56 -12.32 11.79 5.55 0.07 -12.25 16 7 N -0.71 -15.01 5.55 -61.47 -0.34 -15.35 16 8 C 0.25 6.61 5.43 -5.19 -0.03 6.58 16 9 C -0.54 -14.86 9.28 -34.44 -0.32 -15.17 16 10 H 0.06 1.65 7.60 -52.49 -0.40 1.25 16 11 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 12 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 13 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 17 C 0.04 0.54 2.33 -67.73 -0.16 0.38 16 18 H 0.12 1.99 5.60 -51.93 -0.29 1.70 16 19 C -0.12 -1.17 5.17 -25.10 -0.13 -1.30 16 20 C 0.10 0.86 6.52 -3.12 -0.02 0.84 16 21 N -0.56 -6.96 3.14 -112.27 -0.35 -7.31 16 22 C 0.17 2.15 6.60 -83.70 -0.55 1.60 16 23 C -0.16 -2.10 9.29 -39.39 -0.37 -2.47 16 24 C -0.09 -0.99 10.04 -39.61 -0.40 -1.38 16 25 C -0.15 -1.41 10.04 -39.55 -0.40 -1.81 16 26 C -0.09 -0.84 10.04 -39.61 -0.40 -1.23 16 27 C -0.16 -1.61 9.42 -39.39 -0.37 -1.98 16 28 C 0.53 7.98 7.52 -10.86 -0.08 7.90 16 29 O -0.50 -8.70 12.49 5.55 0.07 -8.63 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.62 6.69 -51.92 -0.35 0.27 16 33 H 0.07 0.80 5.91 -51.93 -0.31 0.49 16 34 H 0.08 1.29 5.31 -51.93 -0.28 1.01 16 35 H 0.10 1.39 6.62 -51.93 -0.34 1.05 16 36 H 0.12 1.92 5.84 -51.93 -0.30 1.62 16 37 H 0.39 7.37 8.32 -40.82 -0.34 7.03 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.10 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.09 0.81 7.41 -51.93 -0.38 0.43 16 43 H 0.09 0.55 7.22 -51.93 -0.38 0.17 16 44 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.16 2.38 5.26 -52.48 -0.28 2.10 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 49 H 0.12 0.93 6.74 -52.48 -0.35 0.58 16 LS Contribution 386.29 15.07 5.82 5.82 Total: -1.00 -33.23 386.29 -10.05 -43.29 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -6.93 Total: 9.72 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: -3.07 Total: 2.04 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.98 Total: -56.02 kcal Atomic # 8 Polarization: -21.02 SS G_CDS: 0.13 Total: -20.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.23 -10.05 -43.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731848898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.628 kcal (2) G-P(sol) polarization free energy of solvation -33.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds