Wall clock time and date at job start Wed Apr 1 2020 04:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47460 * 2 1 4 4 C 1.46904 * 110.99822 * 73.44191 * 3 2 1 5 5 C 1.50693 * 109.47187 * 63.21886 * 4 3 2 6 6 O 1.21284 * 120.00198 * 354.19798 * 5 4 3 7 7 N 1.34773 * 120.00146 * 173.91432 * 5 4 3 8 8 C 1.46501 * 120.00042 * 180.27903 * 7 5 4 9 9 C 1.50706 * 109.46979 * 180.02562 * 8 7 5 10 10 H 1.07997 * 119.99974 * 0.02562 * 9 8 7 11 11 C 1.37878 * 119.99985 * 179.97438 * 9 8 7 12 12 N 1.31513 * 119.99910 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00204 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.46685 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47066 * 120.00133 * 13 11 9 16 16 H 1.48499 * 109.47270 * 240.00622 * 13 11 9 17 17 C 1.46900 * 111.00627 * 197.39729 * 3 2 1 18 18 H 1.09004 * 110.43451 * 287.54295 * 17 3 2 19 19 C 1.54632 * 110.48599 * 50.22100 * 17 3 2 20 20 C 1.54479 * 101.76394 * 143.47808 * 19 17 3 21 21 N 1.46762 * 105.47485 * 334.58759 * 20 19 17 22 22 C 1.39922 * 124.35074 * 196.99259 * 21 20 19 23 23 C 1.38866 * 120.07390 * 185.86149 * 22 21 20 24 24 C 1.38114 * 119.93154 * 179.67661 * 23 22 21 25 25 C 1.38282 * 120.06797 * 0.62645 * 24 23 22 26 26 C 1.38283 * 120.13953 * 359.67024 * 25 24 23 27 27 C 1.38110 * 120.07010 * 0.02562 * 26 25 24 28 28 C 1.34421 * 111.29939 * 17.01431 * 21 20 19 29 29 O 1.21291 * 124.93881 * 179.55936 * 28 21 20 30 30 H 1.08997 * 109.47342 * 62.50487 * 1 2 3 31 31 H 1.08996 * 109.47080 * 182.51518 * 1 2 3 32 32 H 1.09007 * 109.46760 * 302.50963 * 1 2 3 33 33 H 1.09001 * 109.46788 * 240.00517 * 2 1 3 34 34 H 1.09004 * 109.47548 * 120.00319 * 2 1 3 35 35 H 1.09000 * 109.47117 * 303.21542 * 4 3 2 36 36 H 1.08997 * 109.46962 * 183.22264 * 4 3 2 37 37 H 0.97001 * 119.99947 * 0.28083 * 7 5 4 38 38 H 1.09000 * 109.47062 * 299.99999 * 8 7 5 39 39 H 1.08991 * 109.47446 * 60.00285 * 8 7 5 40 40 H 0.96999 * 120.00243 * 179.97438 * 12 11 9 41 41 H 1.08998 * 110.96679 * 261.60282 * 19 17 3 42 42 H 1.09006 * 110.96332 * 25.35896 * 19 17 3 43 43 H 1.09000 * 110.24665 * 215.58338 * 20 19 17 44 44 H 1.08997 * 110.23936 * 93.58724 * 20 19 17 45 45 H 1.08006 * 120.03363 * 359.97438 * 23 22 21 46 46 H 1.07996 * 119.96706 * 180.34080 * 24 23 22 47 47 H 1.08000 * 119.92646 * 179.70082 * 25 24 23 48 48 H 1.08005 * 119.96129 * 180.02562 * 26 25 24 49 49 H 1.08007 * 120.03023 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.8267 2.0115 1.3146 5 6 2.6461 1.2788 2.3455 6 8 3.2404 0.2666 2.0402 7 7 2.7230 1.7514 3.6053 8 6 3.5245 1.0424 4.6059 9 6 3.4437 1.7713 5.9225 10 1 2.8540 2.6722 6.0057 11 6 4.1218 1.2873 7.0211 12 7 4.8395 0.1899 6.9200 13 14 4.0212 2.1903 8.6533 14 1 3.1552 3.3875 8.5039 15 1 3.4452 1.2886 9.6831 16 1 5.3825 2.6124 9.0703 17 6 3.4291 1.4451 -0.4100 18 1 4.0722 1.0575 0.3801 19 6 3.6449 0.6569 -1.7227 20 6 4.7001 1.5260 -2.4422 21 7 4.5238 2.8804 -1.9052 22 6 5.0260 4.0397 -2.5066 23 6 4.9127 5.2638 -1.8607 24 6 5.4154 6.4052 -2.4540 25 6 6.0196 6.3320 -3.6957 26 6 6.1286 5.1155 -4.3442 27 6 5.6334 3.9695 -3.7534 28 6 3.8183 2.8641 -0.7611 29 8 3.5355 3.8446 -0.1054 30 1 -0.3634 0.4744 -0.9115 31 1 -0.3633 -1.0266 0.0451 32 1 -0.3633 0.5524 0.8667 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 0.7726 1.9649 1.5881 36 1 2.1449 3.0531 1.2708 37 1 2.2477 2.5609 3.8495 38 1 3.1407 0.0295 4.7276 39 1 4.5626 1.0004 4.2766 40 1 5.3169 -0.1504 7.6927 41 1 4.0341 -0.3407 -1.5191 42 1 2.7228 0.6035 -2.3017 43 1 4.5234 1.5206 -3.5177 44 1 5.7031 1.1606 -2.2221 45 1 4.4361 5.3224 -0.8933 46 1 5.3325 7.3566 -1.9498 47 1 6.4076 7.2267 -4.1597 48 1 6.6014 5.0616 -5.3138 49 1 5.7193 3.0197 -4.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731848898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:06 Heat of formation + Delta-G solvation = -44.965863 kcal Electronic energy + Delta-G solvation = -30712.004540 eV Core-core repulsion = 26638.519372 eV Total energy + Delta-G solvation = -4073.485168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44443 -40.99876 -39.54808 -38.05425 -37.39498 -36.06640 -34.42329 -33.59995 -31.87104 -31.74565 -30.25254 -29.59868 -28.41336 -26.62540 -24.82684 -24.20817 -23.79345 -22.83486 -21.72846 -21.28971 -20.72923 -18.98994 -18.74711 -18.24785 -17.55298 -17.37346 -17.17790 -16.94406 -16.44094 -16.20516 -15.90801 -15.83919 -15.57618 -15.15986 -14.88725 -14.80673 -14.58533 -14.45572 -14.27029 -14.02799 -13.93167 -13.76309 -13.59625 -13.11511 -12.98077 -12.93381 -12.78712 -12.61820 -12.49476 -12.40824 -12.27591 -12.08960 -12.03573 -11.62595 -11.51102 -11.41915 -11.19466 -10.85254 -10.64357 -9.90257 -9.85500 -9.29020 -8.92790 -8.34209 -6.50782 0.26394 0.44935 1.38999 1.40007 1.42472 1.53767 1.60921 1.72278 2.28525 2.55596 2.78256 2.91762 3.00352 3.10624 3.41821 3.84648 3.92175 3.98372 4.04624 4.07956 4.09695 4.30504 4.34859 4.41542 4.46268 4.50803 4.53531 4.58503 4.63388 4.70623 4.76527 4.85249 4.96154 5.02975 5.04633 5.10803 5.12900 5.18021 5.23054 5.38368 5.45178 5.46290 5.58876 5.62845 5.63628 5.75001 5.80639 5.87497 6.01390 6.13334 6.59656 6.80790 6.91134 7.17663 7.37537 8.77922 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010986 B = 0.002797 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.033012 B =10009.719102 C =11669.098281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.026 3.974 3 N -0.486 5.486 4 C 0.031 3.969 5 C 0.470 3.530 6 O -0.586 6.586 7 N -0.708 5.708 8 C 0.270 3.730 9 C -0.558 4.558 10 H 0.079 0.921 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.983 3.017 14 H -0.256 1.256 15 H -0.275 1.275 16 H -0.278 1.278 17 C 0.035 3.965 18 H 0.079 0.921 19 C -0.113 4.113 20 C 0.095 3.905 21 N -0.558 5.558 22 C 0.145 3.855 23 C -0.190 4.190 24 C -0.102 4.102 25 C -0.149 4.149 26 C -0.091 4.091 27 C -0.157 4.157 28 C 0.518 3.482 29 O -0.537 6.537 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.098 0.902 34 H 0.043 0.957 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.405 0.595 38 H -0.009 1.009 39 H -0.017 1.017 40 H 0.269 0.731 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.123 0.877 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.134 0.866 47 H 0.148 0.852 48 H 0.159 0.841 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.569 5.715 -26.780 27.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.101 4.101 3 N -0.209 5.209 4 C -0.101 4.101 5 C 0.257 3.743 6 O -0.469 6.469 7 N -0.357 5.357 8 C 0.147 3.853 9 C -0.596 4.596 10 H 0.098 0.902 11 C -0.195 4.195 12 N -0.568 5.568 13 Si 0.806 3.194 14 H -0.179 1.179 15 H -0.201 1.201 16 H -0.204 1.204 17 C -0.077 4.077 18 H 0.096 0.904 19 C -0.151 4.151 20 C -0.026 4.026 21 N -0.281 5.281 22 C 0.052 3.948 23 C -0.210 4.210 24 C -0.121 4.121 25 C -0.168 4.168 26 C -0.109 4.109 27 C -0.177 4.177 28 C 0.307 3.693 29 O -0.415 6.415 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.061 0.939 35 H 0.146 0.854 36 H 0.133 0.867 37 H 0.240 0.760 38 H 0.009 0.991 39 H 0.001 0.999 40 H 0.078 0.922 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.141 0.859 44 H 0.111 0.889 45 H 0.142 0.858 46 H 0.152 0.848 47 H 0.166 0.834 48 H 0.177 0.823 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.484 5.630 -26.893 27.588 hybrid contribution 0.564 0.060 2.329 2.397 sum -1.920 5.691 -24.564 25.287 Atomic orbital electron populations 1.21737 0.93419 1.02205 1.02322 1.22552 0.96881 0.87552 1.03109 1.62533 1.15075 1.19650 1.23639 1.22532 1.01398 1.00088 0.86057 1.22542 0.82229 0.85320 0.84213 1.90528 1.48815 1.27300 1.80287 1.46405 1.49796 1.29202 1.10339 1.18498 0.88781 0.91589 0.86418 1.21643 1.31736 1.11565 0.94634 0.90247 1.26046 0.93986 0.95723 1.03704 1.70128 1.31374 1.22926 1.32342 0.85129 0.78267 0.78610 0.77348 1.17928 1.20052 1.20366 1.22539 0.92215 0.92581 1.00371 0.90365 1.22823 1.00775 0.99144 0.92368 1.22580 1.00797 0.77886 1.01303 1.45842 1.50906 1.07875 1.23462 1.18104 0.97521 0.85188 0.93985 1.21640 1.04443 0.92656 1.02302 1.21272 0.96930 0.97738 0.96117 1.21484 1.00789 0.99375 0.95116 1.21375 0.97585 0.91330 1.00594 1.21103 1.02111 1.01315 0.93180 1.21253 0.76639 0.91460 0.79900 1.90522 1.56030 1.40308 1.54593 0.91042 0.91098 0.93627 0.88357 0.93898 0.85389 0.86748 0.75964 0.99123 0.99867 0.92172 0.87026 0.86977 0.85931 0.88919 0.85823 0.84826 0.83407 0.82301 0.82946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 10.03 71.98 0.72 -2.12 16 2 C 0.03 0.65 5.13 86.30 0.44 1.09 16 3 N -0.49 -13.58 4.50 -875.57 -3.94 -17.53 16 4 C 0.03 0.97 5.57 85.55 0.48 1.45 16 5 C 0.47 19.42 7.00 87.66 0.61 20.04 16 6 O -0.59 -27.41 11.79 -3.04 -0.04 -27.44 16 7 N -0.71 -31.86 5.55 -466.80 -2.59 -34.45 16 8 C 0.27 15.27 5.43 85.63 0.46 15.73 16 9 C -0.56 -31.46 9.28 25.60 0.24 -31.22 16 10 H 0.08 4.13 7.60 -2.91 -0.02 4.11 16 11 C 0.01 0.29 5.46 84.66 0.46 0.75 16 12 N -0.93 -56.79 13.29 21.45 0.28 -56.51 16 13 Si 0.98 43.50 29.54 68.60 2.03 45.53 16 14 H -0.26 -10.59 7.11 99.48 0.71 -9.89 16 15 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 17 C 0.03 0.99 2.33 44.91 0.10 1.09 16 18 H 0.08 2.87 5.60 -2.39 -0.01 2.85 16 19 C -0.11 -1.94 5.17 31.65 0.16 -1.78 16 20 C 0.10 1.44 6.52 86.83 0.57 2.01 16 21 N -0.56 -13.69 3.14 -627.71 -1.97 -15.66 16 22 C 0.15 3.56 6.60 38.15 0.25 3.82 16 23 C -0.19 -5.30 9.29 22.39 0.21 -5.09 16 24 C -0.10 -2.21 10.04 22.25 0.22 -1.98 16 25 C -0.15 -2.40 10.04 22.29 0.22 -2.18 16 26 C -0.09 -1.28 10.04 22.25 0.22 -1.06 16 27 C -0.16 -2.65 9.42 22.39 0.21 -2.44 16 28 C 0.52 16.23 7.52 87.89 0.66 16.89 16 29 O -0.54 -20.21 12.49 -3.06 -0.04 -20.25 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.04 1.00 6.69 -2.38 -0.02 0.98 16 33 H 0.10 1.95 5.91 -2.39 -0.01 1.94 16 34 H 0.04 1.43 5.31 -2.39 -0.01 1.42 16 35 H 0.13 3.42 6.62 -2.39 -0.02 3.40 16 36 H 0.11 3.87 5.84 -2.39 -0.01 3.85 16 37 H 0.41 15.84 8.32 -92.71 -0.77 15.07 16 38 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 40 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 41 H 0.11 1.62 8.12 -2.39 -0.02 1.60 16 42 H 0.11 1.56 7.41 -2.38 -0.02 1.55 16 43 H 0.12 1.01 7.22 -2.39 -0.02 1.00 16 44 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.12 4.21 5.26 -2.91 -0.02 4.19 16 46 H 0.13 2.46 8.06 -2.91 -0.02 2.43 16 47 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 48 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 49 H 0.15 1.61 6.74 -2.91 -0.02 1.59 16 Total: -1.00 -78.72 386.29 0.20 -78.52 By element: Atomic # 1 Polarization: 32.58 SS G_CDS: 0.21 Total: 32.79 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.26 Total: 15.00 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -8.22 Total: -124.14 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -0.07 Total: -47.69 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -78.72 0.20 -78.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731848898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.554 kcal (2) G-P(sol) polarization free energy of solvation -78.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds