Wall clock time and date at job start Wed Apr 1 2020 03:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46892 * 109.47064 * 2 1 4 4 C 1.46900 * 110.99888 * 161.87912 * 3 2 1 5 5 C 1.50699 * 109.46955 * 286.74853 * 4 3 2 6 6 N 1.29827 * 118.34902 * 359.97438 * 5 4 3 7 7 C 1.35640 * 121.62147 * 179.97438 * 6 5 4 8 8 C 1.39630 * 121.61993 * 180.02562 * 7 6 5 9 9 C 1.37708 * 119.69467 * 179.97438 * 8 7 6 10 10 C 1.38877 * 120.82750 * 359.97438 * 9 8 7 11 11 C 1.37795 * 120.56852 * 359.97438 * 10 9 8 12 12 C 1.39374 * 119.51473 * 0.02562 * 11 10 9 13 13 C 1.46969 * 121.90186 * 180.02562 * 12 11 10 14 14 O 1.21723 * 121.28665 * 359.97438 * 13 12 11 15 15 N 1.35344 * 117.42440 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.71707 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99683 * 135.03732 * 16 15 13 18 18 C 1.39077 * 119.99713 * 315.03824 * 16 15 13 19 19 N 1.31257 * 120.00375 * 350.17545 * 18 16 15 20 20 Si 1.86804 * 119.99686 * 170.17278 * 18 16 15 21 21 H 1.48500 * 109.47072 * 90.00003 * 20 18 16 22 22 H 1.48498 * 109.47043 * 210.00050 * 20 18 16 23 23 H 1.48499 * 109.47044 * 330.00200 * 20 18 16 24 24 C 1.46901 * 110.99957 * 285.82960 * 3 2 1 25 25 C 1.52999 * 109.47016 * 148.54244 * 24 3 2 26 26 C 1.52997 * 109.47568 * 58.67270 * 25 24 3 27 27 C 1.53002 * 109.47334 * 178.67553 * 25 24 3 28 28 O 1.42904 * 109.47185 * 298.67316 * 25 24 3 29 29 H 1.08999 * 109.46880 * 186.40300 * 1 2 3 30 30 H 1.09000 * 109.46514 * 306.40295 * 1 2 3 31 31 H 1.09002 * 109.46963 * 66.40051 * 1 2 3 32 32 H 1.08997 * 109.46927 * 239.99491 * 2 1 3 33 33 H 1.09002 * 109.46648 * 120.00270 * 2 1 3 34 34 H 1.08999 * 109.47219 * 166.74806 * 4 3 2 35 35 H 1.08999 * 109.47350 * 46.75397 * 4 3 2 36 36 H 1.08004 * 120.15631 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.59314 * 180.27775 * 9 8 7 38 38 H 1.08000 * 119.71883 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.24530 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99944 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47292 * 268.54006 * 24 3 2 42 42 H 1.08997 * 109.47304 * 28.54214 * 24 3 2 43 43 H 1.09007 * 109.46877 * 48.65116 * 26 25 24 44 44 H 1.09003 * 109.47583 * 168.64976 * 26 25 24 45 45 H 1.08995 * 109.47351 * 288.65343 * 26 25 24 46 46 H 1.09004 * 109.47324 * 59.99583 * 27 25 24 47 47 H 1.08999 * 109.47614 * 179.97438 * 27 25 24 48 48 H 1.09001 * 109.47395 * 299.99951 * 27 25 24 49 49 H 0.96702 * 114.00102 * 304.73732 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4241 1.4468 0.4265 5 6 3.5093 1.2021 1.9111 6 7 2.4085 0.9859 2.5645 7 6 2.4082 0.7577 3.9015 8 6 1.2243 0.5246 4.6042 9 6 1.2701 0.2968 5.9615 10 6 2.4805 0.2951 6.6424 11 6 3.6625 0.5215 5.9712 12 6 3.6381 0.7542 4.5972 13 6 4.8668 1.0010 3.8294 14 8 5.9579 1.0117 4.3688 15 7 4.7381 1.2158 2.4993 16 6 5.8536 1.4514 1.7379 17 1 5.9745 0.9515 0.7882 18 6 6.8294 2.3340 2.1885 19 7 6.6000 3.0850 3.2402 20 14 8.4668 2.4506 1.2968 21 1 8.3782 3.4820 0.2321 22 1 9.5306 2.8261 2.2625 23 1 8.7930 1.1365 0.6870 24 6 1.8425 2.0059 -1.3194 25 6 1.5944 3.5059 -1.1479 26 6 2.7774 4.1376 -0.4115 27 6 1.4427 4.1584 -2.5235 28 8 0.3994 3.7076 -0.3906 29 1 -0.3633 -1.0213 0.1146 30 1 -0.3632 0.6099 0.8272 31 1 -0.3633 0.4114 -0.9417 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8306 2.4316 0.1967 35 1 3.9979 0.6848 -0.1009 36 1 0.2769 0.5231 4.0855 37 1 0.3538 0.1123 6.5026 38 1 2.4956 0.1149 7.7071 39 1 4.6008 0.5186 6.5058 40 1 7.2807 3.7003 3.5547 41 1 2.7410 1.8523 -1.9170 42 1 0.9892 1.5518 -1.8231 43 1 3.7090 3.8155 -0.8770 44 1 2.7010 5.2237 -0.4653 45 1 2.7653 3.8238 0.6322 46 1 0.5998 3.7084 -3.0481 47 1 1.2655 5.2269 -2.4013 48 1 2.3541 4.0046 -3.1011 49 1 -0.3796 3.2708 -0.7614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744402439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:13 Heat of formation + Delta-G solvation = -13.065903 kcal Electronic energy + Delta-G solvation = -32348.350007 eV Core-core repulsion = 28276.248126 eV Total energy + Delta-G solvation = -4072.101882 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.43934 -38.89675 -37.51478 -36.63568 -35.47315 -33.69021 -32.30147 -31.80827 -30.72840 -30.26675 -29.05070 -27.44269 -26.74300 -25.72798 -24.54367 -22.88221 -22.09571 -21.01203 -20.45418 -20.00077 -18.68932 -17.75926 -16.91373 -16.42877 -15.71737 -15.48902 -15.14955 -14.97585 -14.67310 -14.27655 -14.16954 -14.06081 -13.72452 -13.66482 -13.36391 -13.03754 -12.94172 -12.80807 -12.29918 -12.22882 -12.06575 -11.88756 -11.77869 -11.63314 -11.54586 -11.43784 -11.31002 -11.25889 -11.07613 -10.96278 -10.92683 -10.58324 -10.51581 -10.44283 -10.31514 -9.62193 -9.45957 -8.80425 -8.67798 -8.31874 -8.28953 -7.83196 -6.94140 -6.57741 -4.52733 1.57675 1.74429 3.03132 3.10984 3.14667 3.33268 3.74431 3.97175 4.02972 4.43711 4.61974 4.75786 4.88776 4.96630 5.10318 5.17898 5.22019 5.37573 5.41608 5.46264 5.53154 5.59169 5.61696 5.66890 5.67616 5.83389 5.87356 5.91064 5.94993 6.00243 6.03340 6.10488 6.15800 6.19745 6.23952 6.32322 6.39437 6.55412 6.59951 6.68055 6.76809 6.88448 7.08447 7.12501 7.20924 7.37637 7.50350 7.57526 7.70502 8.00716 8.21046 8.53861 8.79116 9.28590 9.61714 10.41903 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007888 B = 0.005833 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.698132 B = 4799.028471 C = 7407.245020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.060 3.940 3 N -0.501 5.501 4 C 0.107 3.893 5 C 0.370 3.630 6 N -0.537 5.537 7 C 0.168 3.832 8 C -0.129 4.129 9 C -0.092 4.092 10 C -0.177 4.177 11 C -0.040 4.040 12 C -0.209 4.209 13 C 0.520 3.480 14 O -0.497 6.497 15 N -0.358 5.358 16 C -0.382 4.382 17 H 0.102 0.898 18 C 0.073 3.927 19 N -0.803 5.803 20 Si 0.927 3.073 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.027 3.973 25 C 0.137 3.863 26 C -0.144 4.144 27 C -0.177 4.177 28 O -0.541 6.541 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.017 0.983 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.053 0.947 36 H 0.124 0.876 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.122 0.878 40 H 0.278 0.722 41 H 0.044 0.956 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.062 0.938 49 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 -1.997 -8.600 13.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.068 4.068 3 N -0.225 5.225 4 C -0.022 4.022 5 C 0.106 3.894 6 N -0.263 5.263 7 C 0.052 3.948 8 C -0.149 4.149 9 C -0.112 4.112 10 C -0.196 4.196 11 C -0.060 4.060 12 C -0.217 4.217 13 C 0.314 3.686 14 O -0.370 6.370 15 N -0.063 5.063 16 C -0.509 4.509 17 H 0.120 0.880 18 C -0.143 4.143 19 N -0.431 5.431 20 Si 0.752 3.248 21 H -0.198 1.198 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.102 4.102 25 C 0.096 3.904 26 C -0.200 4.200 27 C -0.235 4.235 28 O -0.345 6.345 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.036 0.964 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.071 0.929 36 H 0.142 0.858 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.140 0.860 40 H 0.089 0.911 41 H 0.062 0.938 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.081 0.919 49 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -10.017 -1.241 -7.651 12.666 hybrid contribution 1.730 -0.619 -0.740 1.981 sum -8.287 -1.860 -8.391 11.940 Atomic orbital electron populations 1.21682 0.95279 1.00807 1.01619 1.22048 0.95984 0.88572 1.00214 1.61520 1.18248 1.17869 1.24826 1.21221 0.88685 1.03773 0.88517 1.22746 0.80900 0.90422 0.95316 1.68536 1.24437 1.27110 1.06263 1.18887 0.91937 0.94125 0.89864 1.20589 0.96693 1.04135 0.93440 1.20963 0.97323 0.98778 0.94099 1.20824 0.92418 1.07023 0.99317 1.20880 0.98132 0.94285 0.92657 1.20942 0.94048 1.10985 0.95713 1.18218 0.88619 0.79649 0.82086 1.90662 1.28320 1.49068 1.68981 1.42217 1.06081 1.49749 1.08236 1.19504 0.98146 1.28121 1.05170 0.88021 1.25454 0.99956 0.93494 0.95416 1.69811 1.34803 1.17925 1.20567 0.85948 0.80836 0.79073 0.78940 1.19777 1.20256 1.18923 1.22895 1.00975 0.95696 0.90623 1.21122 0.86749 0.92676 0.89884 1.21931 0.95142 1.00193 1.02774 1.22493 1.01924 1.01689 0.97401 1.86649 1.17775 1.76191 1.53852 0.93324 0.90954 0.94110 0.96441 0.89850 0.86435 0.92935 0.85786 0.86640 0.86759 0.86024 0.91149 0.93756 0.90956 0.91455 0.92787 0.89915 0.92772 0.91834 0.91870 0.78939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.92 37.16 0.37 -1.26 16 2 C 0.06 0.84 5.06 -3.82 -0.02 0.82 16 3 N -0.50 -7.58 3.57 -236.08 -0.84 -8.42 16 4 C 0.11 1.91 3.16 -4.98 -0.02 1.89 16 5 C 0.37 8.15 7.06 -154.87 -1.09 7.05 16 6 N -0.54 -11.53 7.92 -8.10 -0.06 -11.59 16 7 C 0.17 3.68 6.63 -84.50 -0.56 3.12 16 8 C -0.13 -2.37 10.03 -39.26 -0.39 -2.77 16 9 C -0.09 -1.51 10.00 -39.54 -0.40 -1.90 16 10 C -0.18 -3.07 10.02 -39.51 -0.40 -3.47 16 11 C -0.04 -0.85 9.68 -39.32 -0.38 -1.23 16 12 C -0.21 -5.00 5.89 -104.77 -0.62 -5.62 16 13 C 0.52 14.12 6.88 -12.47 -0.09 14.03 16 14 O -0.50 -14.81 14.26 5.17 0.07 -14.74 16 15 N -0.36 -9.07 2.67 -59.56 -0.16 -9.23 16 16 C -0.38 -9.61 8.14 -14.88 -0.12 -9.73 16 17 H 0.10 2.33 7.16 -52.49 -0.38 1.95 16 18 C 0.07 1.87 4.68 -17.49 -0.08 1.79 16 19 N -0.80 -22.39 11.18 55.50 0.62 -21.77 16 20 Si 0.93 19.53 29.56 -169.99 -5.03 14.50 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.04 16 24 C 0.03 0.33 4.17 -3.82 -0.02 0.31 16 25 C 0.14 1.72 1.17 -90.62 -0.11 1.61 16 26 C -0.14 -2.14 7.18 37.16 0.27 -1.87 16 27 C -0.18 -1.74 8.81 37.16 0.33 -1.41 16 28 O -0.54 -7.47 12.88 -35.23 -0.45 -7.93 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.04 0.42 6.90 -51.93 -0.36 0.06 16 32 H 0.02 0.23 8.02 -51.93 -0.42 -0.19 16 33 H 0.08 1.40 6.39 -51.93 -0.33 1.07 16 34 H 0.12 2.13 4.09 -51.93 -0.21 1.92 16 35 H 0.05 0.90 7.52 -51.93 -0.39 0.51 16 36 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 37 H 0.12 1.48 8.06 -52.49 -0.42 1.05 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.12 2.56 7.83 -52.49 -0.41 2.14 16 40 H 0.28 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.04 0.52 7.82 -51.93 -0.41 0.11 16 42 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 43 H 0.07 0.93 7.04 -51.92 -0.37 0.57 16 44 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 45 H 0.08 1.54 6.75 -51.93 -0.35 1.19 16 46 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.36 3.70 9.03 45.56 0.41 4.11 16 LS Contribution 388.11 15.07 5.85 5.85 Total: -1.00 -31.66 388.11 -9.80 -41.46 By element: Atomic # 1 Polarization: 16.97 SS G_CDS: -6.48 Total: 10.50 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: -3.32 Total: 1.37 kcal Atomic # 7 Polarization: -50.57 SS G_CDS: -0.45 Total: -51.01 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: -0.38 Total: -22.66 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.03 Total: 14.50 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.66 -9.80 -41.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744402439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.391 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds