Wall clock time and date at job start Wed Apr 1 2020 03:34:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46892 * 109.47064 * 2 1 4 4 C 1.46900 * 110.99888 * 161.87912 * 3 2 1 5 5 C 1.50699 * 109.46955 * 286.74853 * 4 3 2 6 6 N 1.29827 * 118.34902 * 359.97438 * 5 4 3 7 7 C 1.35640 * 121.62147 * 179.97438 * 6 5 4 8 8 C 1.39630 * 121.61993 * 180.02562 * 7 6 5 9 9 C 1.37708 * 119.69467 * 179.97438 * 8 7 6 10 10 C 1.38877 * 120.82750 * 359.97438 * 9 8 7 11 11 C 1.37795 * 120.56852 * 359.97438 * 10 9 8 12 12 C 1.39374 * 119.51473 * 0.02562 * 11 10 9 13 13 C 1.46969 * 121.90186 * 180.02562 * 12 11 10 14 14 O 1.21723 * 121.28665 * 359.97438 * 13 12 11 15 15 N 1.35344 * 117.42440 * 179.97438 * 13 12 11 16 16 C 1.37104 * 119.71707 * 179.97438 * 15 13 12 17 17 H 1.07999 * 119.99683 * 135.03732 * 16 15 13 18 18 C 1.39077 * 119.99713 * 315.03824 * 16 15 13 19 19 N 1.31257 * 120.00375 * 350.17545 * 18 16 15 20 20 Si 1.86804 * 119.99686 * 170.17278 * 18 16 15 21 21 H 1.48500 * 109.47072 * 90.00003 * 20 18 16 22 22 H 1.48498 * 109.47043 * 210.00050 * 20 18 16 23 23 H 1.48499 * 109.47044 * 330.00200 * 20 18 16 24 24 C 1.46901 * 110.99957 * 285.82960 * 3 2 1 25 25 C 1.52999 * 109.47016 * 148.54244 * 24 3 2 26 26 C 1.52997 * 109.47568 * 58.67270 * 25 24 3 27 27 C 1.53002 * 109.47334 * 178.67553 * 25 24 3 28 28 O 1.42904 * 109.47185 * 298.67316 * 25 24 3 29 29 H 1.08999 * 109.46880 * 186.40300 * 1 2 3 30 30 H 1.09000 * 109.46514 * 306.40295 * 1 2 3 31 31 H 1.09002 * 109.46963 * 66.40051 * 1 2 3 32 32 H 1.08997 * 109.46927 * 239.99491 * 2 1 3 33 33 H 1.09002 * 109.46648 * 120.00270 * 2 1 3 34 34 H 1.08999 * 109.47219 * 166.74806 * 4 3 2 35 35 H 1.08999 * 109.47350 * 46.75397 * 4 3 2 36 36 H 1.08004 * 120.15631 * 359.97438 * 8 7 6 37 37 H 1.08000 * 119.59314 * 180.27775 * 9 8 7 38 38 H 1.08000 * 119.71883 * 179.97438 * 10 9 8 39 39 H 1.08000 * 120.24530 * 180.02562 * 11 10 9 40 40 H 0.97001 * 119.99944 * 179.97438 * 19 18 16 41 41 H 1.08997 * 109.47292 * 268.54006 * 24 3 2 42 42 H 1.08997 * 109.47304 * 28.54214 * 24 3 2 43 43 H 1.09007 * 109.46877 * 48.65116 * 26 25 24 44 44 H 1.09003 * 109.47583 * 168.64976 * 26 25 24 45 45 H 1.08995 * 109.47351 * 288.65343 * 26 25 24 46 46 H 1.09004 * 109.47324 * 59.99583 * 27 25 24 47 47 H 1.08999 * 109.47614 * 179.97438 * 27 25 24 48 48 H 1.09001 * 109.47395 * 299.99951 * 27 25 24 49 49 H 0.96702 * 114.00102 * 304.73732 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4241 1.4468 0.4265 5 6 3.5093 1.2021 1.9111 6 7 2.4085 0.9859 2.5645 7 6 2.4082 0.7577 3.9015 8 6 1.2243 0.5246 4.6042 9 6 1.2701 0.2968 5.9615 10 6 2.4805 0.2951 6.6424 11 6 3.6625 0.5215 5.9712 12 6 3.6381 0.7542 4.5972 13 6 4.8668 1.0010 3.8294 14 8 5.9579 1.0117 4.3688 15 7 4.7381 1.2158 2.4993 16 6 5.8536 1.4514 1.7379 17 1 5.9745 0.9515 0.7882 18 6 6.8294 2.3340 2.1885 19 7 6.6000 3.0850 3.2402 20 14 8.4668 2.4506 1.2968 21 1 8.3782 3.4820 0.2321 22 1 9.5306 2.8261 2.2625 23 1 8.7930 1.1365 0.6870 24 6 1.8425 2.0059 -1.3194 25 6 1.5944 3.5059 -1.1479 26 6 2.7774 4.1376 -0.4115 27 6 1.4427 4.1584 -2.5235 28 8 0.3994 3.7076 -0.3906 29 1 -0.3633 -1.0213 0.1146 30 1 -0.3632 0.6099 0.8272 31 1 -0.3633 0.4114 -0.9417 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8306 2.4316 0.1967 35 1 3.9979 0.6848 -0.1009 36 1 0.2769 0.5231 4.0855 37 1 0.3538 0.1123 6.5026 38 1 2.4956 0.1149 7.7071 39 1 4.6008 0.5186 6.5058 40 1 7.2807 3.7003 3.5547 41 1 2.7410 1.8523 -1.9170 42 1 0.9892 1.5518 -1.8231 43 1 3.7090 3.8155 -0.8770 44 1 2.7010 5.2237 -0.4653 45 1 2.7653 3.8238 0.6322 46 1 0.5998 3.7084 -3.0481 47 1 1.2655 5.2269 -2.4013 48 1 2.3541 4.0046 -3.1011 49 1 -0.3796 3.2708 -0.7614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744402439.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:10 Heat of formation + Delta-G solvation = -34.407745 kcal Electronic energy + Delta-G solvation = -32349.275459 eV Core-core repulsion = 28276.248126 eV Total energy + Delta-G solvation = -4073.027333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.17774 -40.04395 -39.15780 -38.19092 -36.88083 -35.48076 -33.67499 -33.30451 -32.10746 -31.81442 -30.41202 -28.65985 -27.86516 -27.58045 -25.77196 -24.59798 -23.51662 -22.56060 -21.77172 -21.06488 -20.47543 -19.45826 -18.56690 -17.52342 -17.47895 -16.84254 -16.54613 -16.40322 -16.09013 -15.90927 -15.54229 -15.44308 -15.21724 -15.09760 -14.63031 -14.47545 -14.30425 -14.16084 -13.90604 -13.59266 -13.36109 -13.22907 -12.99379 -12.98627 -12.90951 -12.69001 -12.66467 -12.49237 -12.48403 -12.44941 -12.33673 -12.21672 -11.66694 -11.65029 -11.45332 -11.22867 -10.74235 -10.61762 -10.42441 -10.19256 -9.88836 -8.98843 -8.71443 -8.44498 -6.50518 -0.05642 0.12299 1.33351 1.39808 1.49651 1.60837 2.04515 2.30015 2.47934 2.91324 3.07294 3.34463 3.43731 3.61399 3.84262 3.92125 3.99064 4.08422 4.20282 4.23855 4.27552 4.33024 4.39064 4.50330 4.61174 4.63812 4.66640 4.71703 4.77519 4.80822 4.86641 4.94845 5.02241 5.08141 5.12824 5.16469 5.19851 5.21825 5.32522 5.38147 5.39694 5.45979 5.57500 5.59018 5.60655 5.83623 6.02566 6.18570 6.33330 6.44483 6.66827 6.89328 7.18450 7.49460 7.70859 8.52866 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.007888 B = 0.005833 C = 0.003779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3548.698132 B = 4799.028471 C = 7407.245020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.059 3.941 3 N -0.510 5.510 4 C 0.117 3.883 5 C 0.358 3.642 6 N -0.522 5.522 7 C 0.137 3.863 8 C -0.124 4.124 9 C -0.073 4.073 10 C -0.151 4.151 11 C -0.069 4.069 12 C -0.241 4.241 13 C 0.495 3.505 14 O -0.549 6.549 15 N -0.376 5.376 16 C -0.397 4.397 17 H 0.118 0.882 18 C 0.022 3.978 19 N -0.854 5.854 20 Si 0.995 3.005 21 H -0.249 1.249 22 H -0.289 1.289 23 H -0.254 1.254 24 C 0.028 3.972 25 C 0.139 3.861 26 C -0.142 4.142 27 C -0.168 4.168 28 O -0.564 6.564 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.108 0.892 40 H 0.273 0.727 41 H 0.054 0.946 42 H 0.100 0.900 43 H 0.072 0.928 44 H 0.053 0.947 45 H 0.037 0.963 46 H 0.077 0.923 47 H 0.058 0.942 48 H 0.072 0.928 49 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.443 -2.927 -10.222 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.069 4.069 3 N -0.234 5.234 4 C -0.013 4.013 5 C 0.094 3.906 6 N -0.247 5.247 7 C 0.022 3.978 8 C -0.144 4.144 9 C -0.092 4.092 10 C -0.170 4.170 11 C -0.088 4.088 12 C -0.248 4.248 13 C 0.291 3.709 14 O -0.427 6.427 15 N -0.081 5.081 16 C -0.523 4.523 17 H 0.135 0.865 18 C -0.188 4.188 19 N -0.485 5.485 20 Si 0.815 3.185 21 H -0.173 1.173 22 H -0.215 1.215 23 H -0.178 1.178 24 C -0.100 4.100 25 C 0.098 3.902 26 C -0.199 4.199 27 C -0.226 4.226 28 O -0.371 6.371 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.091 0.909 49 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -13.306 -2.192 -9.313 16.389 hybrid contribution 2.446 -0.407 -0.086 2.481 sum -10.861 -2.599 -9.399 14.596 Atomic orbital electron populations 1.21591 0.93249 1.01401 1.02111 1.22051 0.97521 0.87849 0.99430 1.61493 1.16114 1.18754 1.27023 1.21148 0.90834 1.03367 0.85934 1.23542 0.80113 0.89771 0.97194 1.68611 1.24056 1.25732 1.06312 1.19384 0.92675 0.95467 0.90244 1.20986 0.96097 1.02766 0.94543 1.21558 0.98879 0.95549 0.93261 1.21331 0.91147 1.03318 1.01204 1.21006 0.99524 0.96400 0.91899 1.21090 0.93664 1.13003 0.97041 1.18892 0.89294 0.79606 0.83117 1.90582 1.30026 1.52010 1.70101 1.42341 1.07275 1.50506 1.08016 1.19930 0.98712 1.28064 1.05637 0.86490 1.26500 1.03579 0.92809 0.95904 1.69968 1.35773 1.19597 1.23149 0.84954 0.75675 0.79951 0.77882 1.17281 1.21506 1.17811 1.22991 1.02580 0.95226 0.89196 1.21117 0.85385 0.92960 0.90740 1.21892 0.97139 1.00382 1.00455 1.22389 1.03428 1.01218 0.95589 1.86608 1.18788 1.76768 1.54951 0.92118 0.92863 0.91683 0.94808 0.93067 0.87075 0.92410 0.83375 0.81173 0.82583 0.87405 0.91785 0.92752 0.88135 0.90883 0.92835 0.94356 0.90412 0.92339 0.90921 0.77046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.92 71.98 0.71 -1.96 16 2 C 0.06 1.58 5.06 86.31 0.44 2.02 16 3 N -0.51 -14.97 3.57 -900.81 -3.21 -18.19 16 4 C 0.12 4.26 3.16 85.56 0.27 4.53 16 5 C 0.36 16.52 7.06 137.94 0.97 17.49 16 6 N -0.52 -23.02 7.92 -179.54 -1.42 -24.44 16 7 C 0.14 6.10 6.63 39.64 0.26 6.36 16 8 C -0.12 -4.30 10.03 22.48 0.23 -4.07 16 9 C -0.07 -2.09 10.00 22.30 0.22 -1.86 16 10 C -0.15 -4.85 10.02 22.32 0.22 -4.63 16 11 C -0.07 -2.97 9.68 22.44 0.22 -2.75 16 12 C -0.24 -12.10 5.89 -19.96 -0.12 -12.22 16 13 C 0.50 28.91 6.88 86.44 0.59 29.50 16 14 O -0.55 -35.56 14.26 -4.42 -0.06 -35.63 16 15 N -0.38 -20.28 2.67 -460.23 -1.23 -21.51 16 16 C -0.40 -21.06 8.14 84.07 0.68 -20.38 16 17 H 0.12 5.57 7.16 -2.91 -0.02 5.54 16 18 C 0.02 1.21 4.68 84.98 0.40 1.61 16 19 N -0.85 -51.22 11.18 21.68 0.24 -50.98 16 20 Si 0.99 41.65 29.56 68.60 2.03 43.68 16 21 H -0.25 -9.36 7.11 99.48 0.71 -8.65 16 22 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 C 0.03 0.61 4.17 86.30 0.36 0.97 16 25 C 0.14 3.25 1.17 -10.79 -0.01 3.24 16 26 C -0.14 -4.29 7.18 71.98 0.52 -3.77 16 27 C -0.17 -2.81 8.81 71.98 0.63 -2.18 16 28 O -0.56 -14.72 12.88 -148.98 -1.92 -16.64 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.06 1.06 6.90 -2.39 -0.02 1.04 16 32 H 0.03 0.79 8.02 -2.39 -0.02 0.78 16 33 H 0.05 1.70 6.39 -2.39 -0.02 1.69 16 34 H 0.11 4.20 4.09 -2.39 -0.01 4.19 16 35 H 0.06 2.01 7.52 -2.39 -0.02 1.99 16 36 H 0.15 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.16 3.72 8.06 -2.91 -0.02 3.70 16 39 H 0.11 4.85 7.83 -2.91 -0.02 4.83 16 40 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 41 H 0.05 1.11 7.82 -2.39 -0.02 1.09 16 42 H 0.10 1.65 6.43 -2.39 -0.02 1.64 16 43 H 0.07 2.06 7.04 -2.38 -0.02 2.04 16 44 H 0.05 1.56 8.10 -2.39 -0.02 1.54 16 45 H 0.04 1.49 6.75 -2.39 -0.02 1.47 16 46 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 47 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 49 H 0.38 6.71 9.03 -74.06 -0.67 6.04 16 Total: -1.00 -77.67 388.11 1.34 -76.34 By element: Atomic # 1 Polarization: 35.17 SS G_CDS: 0.31 Total: 35.47 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: 6.60 Total: 11.90 kcal Atomic # 7 Polarization: -109.50 SS G_CDS: -5.62 Total: -115.12 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -1.98 Total: -52.27 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -77.67 1.34 -76.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744402439.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.928 kcal (2) G-P(sol) polarization free energy of solvation -77.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds