Wall clock time and date at job start Wed Apr 1 2020 03:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46601 * 2 1 4 4 C 1.46896 * 111.00340 * 290.77188 * 3 2 1 5 5 C 1.50700 * 109.47305 * 167.78967 * 4 3 2 6 6 N 1.29829 * 118.34842 * 354.28786 * 5 4 3 7 7 C 1.35629 * 121.62272 * 179.76579 * 6 5 4 8 8 C 1.39636 * 121.62230 * 180.27988 * 7 6 5 9 9 C 1.37705 * 119.69413 * 180.19801 * 8 7 6 10 10 C 1.38871 * 120.83121 * 359.97438 * 9 8 7 11 11 C 1.37799 * 120.56688 * 359.97438 * 10 9 8 12 12 C 1.39364 * 119.51671 * 0.02562 * 11 10 9 13 13 C 1.46967 * 121.90435 * 180.02562 * 12 11 10 14 14 O 1.21717 * 121.28955 * 359.97438 * 13 12 11 15 15 N 1.35345 * 117.42456 * 179.97438 * 13 12 11 16 16 C 1.37101 * 119.71856 * 179.97438 * 15 13 12 17 17 H 1.08000 * 120.00055 * 137.00071 * 16 15 13 18 18 C 1.39075 * 119.99855 * 317.01461 * 16 15 13 19 19 N 1.31252 * 120.00173 * 342.60925 * 18 16 15 20 20 Si 1.86807 * 119.99995 * 162.61539 * 18 16 15 21 21 H 1.48498 * 109.47061 * 89.99416 * 20 18 16 22 22 H 1.48500 * 109.46839 * 209.99418 * 20 18 16 23 23 H 1.48499 * 109.47065 * 329.99621 * 20 18 16 24 24 C 1.46904 * 110.99467 * 166.82074 * 3 2 1 25 25 C 1.52995 * 109.47527 * 293.95359 * 24 3 2 26 26 H 1.09000 * 109.47076 * 59.99673 * 25 24 3 27 27 C 1.53001 * 109.47326 * 180.02562 * 25 24 3 28 28 O 1.42904 * 109.46870 * 300.00387 * 25 24 3 29 29 C 1.42903 * 113.99991 * 150.00053 * 28 25 24 30 30 H 1.09007 * 109.46501 * 186.52151 * 1 2 3 31 31 H 1.08992 * 109.47440 * 306.51933 * 1 2 3 32 32 H 1.09000 * 109.47122 * 66.52998 * 1 2 3 33 33 H 1.09001 * 109.47001 * 239.99837 * 2 1 3 34 34 H 1.09002 * 109.47274 * 120.00070 * 2 1 3 35 35 H 1.08999 * 109.47348 * 287.79082 * 4 3 2 36 36 H 1.09003 * 109.46996 * 47.78875 * 4 3 2 37 37 H 1.08000 * 120.15434 * 0.16776 * 8 7 6 38 38 H 1.08004 * 119.58855 * 179.97438 * 9 8 7 39 39 H 1.07995 * 119.71982 * 180.02562 * 10 9 8 40 40 H 1.08002 * 120.24078 * 180.02562 * 11 10 9 41 41 H 0.97005 * 120.00225 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.47209 * 173.95113 * 24 3 2 43 43 H 1.09004 * 109.47629 * 53.95717 * 24 3 2 44 44 H 1.08999 * 109.47191 * 60.00112 * 27 25 24 45 45 H 1.09005 * 109.46777 * 179.97438 * 27 25 24 46 46 H 1.09001 * 109.46789 * 299.99603 * 27 25 24 47 47 H 1.09007 * 109.46769 * 299.99874 * 29 28 25 48 48 H 1.08997 * 109.47450 * 59.99726 * 29 28 25 49 49 H 1.08994 * 109.47236 * 179.97438 * 29 28 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7365 2.0435 -1.2822 5 6 1.9732 3.5258 -1.1488 6 7 2.2572 4.0015 0.0254 7 6 2.4872 5.3239 0.2203 8 6 2.7983 5.8346 1.4821 9 6 3.0204 7.1850 1.6356 10 6 2.9395 8.0475 0.5502 11 6 2.6351 7.5675 -0.7051 12 6 2.4067 6.2042 -0.8822 13 6 2.0790 5.6359 -2.1973 14 8 1.9940 6.3398 -3.1867 15 7 1.8754 4.2996 -2.2658 16 6 1.5665 3.7200 -3.4692 17 1 2.0351 2.7905 -3.7570 18 6 0.6498 4.3291 -4.3195 19 7 -0.1654 5.2474 -3.8561 20 14 0.5788 3.8401 -6.1210 21 1 -0.3814 2.7204 -6.2925 22 1 0.1345 5.0020 -6.9321 23 1 1.9270 3.4092 -6.5704 24 6 3.4540 1.4363 0.3127 25 6 3.6791 0.9706 1.7526 26 1 3.3192 -0.0522 1.8642 27 6 5.1731 1.0246 2.0784 28 8 2.9657 1.8268 2.6471 29 6 2.5292 1.1816 3.8451 30 1 -0.3632 -1.0211 0.1167 31 1 -0.3634 0.6115 0.8258 32 1 -0.3633 0.4093 -0.9426 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 2.3937 1.6384 -2.0516 36 1 0.6978 1.8651 -1.5608 37 1 2.8640 5.1738 2.3338 38 1 3.2605 7.5783 2.6124 39 1 3.1175 9.1033 0.6910 40 1 2.5739 8.2430 -1.5456 41 1 -0.8050 5.6720 -4.4491 42 1 3.8139 2.4591 0.2011 43 1 3.9983 0.7832 -0.3696 44 1 5.5325 2.0476 1.9670 45 1 5.3333 0.6933 3.1045 46 1 5.7175 0.3717 1.3962 47 1 1.8645 0.3557 3.5915 48 1 3.3938 0.7987 4.3873 49 1 1.9968 1.8981 4.4705 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812908440.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:17 Heat of formation + Delta-G solvation = -8.382962 kcal Electronic energy + Delta-G solvation = -32142.543762 eV Core-core repulsion = 28070.644948 eV Total energy + Delta-G solvation = -4071.898814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.40357 -38.61610 -37.51620 -36.91010 -35.67755 -33.67563 -32.10610 -31.76713 -30.73186 -30.22536 -28.82132 -27.07745 -26.34348 -25.70022 -24.39303 -22.96287 -22.30095 -21.44054 -20.72905 -19.89529 -18.66409 -17.69140 -16.93996 -16.47925 -15.82173 -15.64119 -15.17200 -14.93937 -14.63624 -14.39975 -14.30270 -13.97787 -13.82788 -13.71470 -13.57738 -13.10206 -12.90395 -12.80424 -12.53772 -12.35752 -12.17209 -12.09663 -11.79479 -11.71225 -11.57990 -11.31543 -11.24878 -11.14563 -11.09444 -11.02959 -10.90171 -10.87643 -10.53920 -10.34589 -10.10328 -9.43092 -9.26293 -8.81570 -8.59513 -8.28100 -8.25238 -7.82738 -6.92064 -6.59750 -4.47619 1.60811 1.78172 3.05519 3.14883 3.18098 3.36353 3.77568 3.99832 4.05155 4.09781 4.52693 4.76687 4.96872 5.03296 5.18237 5.23554 5.27996 5.34077 5.41130 5.45084 5.50914 5.56804 5.61105 5.65372 5.69831 5.71257 5.74673 5.82019 5.85332 5.93481 5.97128 6.00689 6.07958 6.18660 6.19722 6.24898 6.31732 6.42350 6.48595 6.60305 6.82284 6.92388 7.11937 7.15818 7.25272 7.39623 7.45337 7.61664 7.65839 7.71060 8.22311 8.55722 8.81466 9.32446 9.61443 10.41063 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009004 B = 0.005195 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3109.042932 B = 5388.116358 C = 7751.017466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 N -0.504 5.504 4 C 0.124 3.876 5 C 0.361 3.639 6 N -0.526 5.526 7 C 0.168 3.832 8 C -0.123 4.123 9 C -0.094 4.094 10 C -0.176 4.176 11 C -0.042 4.042 12 C -0.210 4.210 13 C 0.521 3.479 14 O -0.506 6.506 15 N -0.355 5.355 16 C -0.386 4.386 17 H 0.104 0.896 18 C 0.079 3.921 19 N -0.803 5.803 20 Si 0.926 3.074 21 H -0.273 1.273 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.060 3.940 25 C 0.096 3.904 26 H 0.051 0.949 27 C -0.175 4.175 28 O -0.346 6.346 29 C 0.033 3.967 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.054 0.946 36 H 0.106 0.894 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.279 0.721 42 H 0.100 0.900 43 H 0.032 0.968 44 H 0.066 0.934 45 H 0.053 0.947 46 H 0.059 0.941 47 H 0.034 0.966 48 H 0.028 0.972 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.010 -9.420 10.518 14.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 N -0.228 5.228 4 C -0.005 4.005 5 C 0.098 3.902 6 N -0.252 5.252 7 C 0.051 3.949 8 C -0.143 4.143 9 C -0.114 4.114 10 C -0.195 4.195 11 C -0.061 4.061 12 C -0.218 4.218 13 C 0.315 3.685 14 O -0.380 6.380 15 N -0.060 5.060 16 C -0.512 4.512 17 H 0.121 0.879 18 C -0.137 4.137 19 N -0.431 5.431 20 Si 0.751 3.249 21 H -0.199 1.199 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.068 4.068 25 C 0.038 3.962 26 H 0.069 0.931 27 C -0.233 4.233 28 O -0.264 6.264 29 C -0.064 4.064 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.146 0.854 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.118 0.882 43 H 0.050 0.950 44 H 0.085 0.915 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.545 -8.744 10.804 14.623 hybrid contribution 0.225 -0.194 -2.011 2.033 sum 4.770 -8.937 8.793 13.414 Atomic orbital electron populations 1.21788 0.94965 1.00884 1.02966 1.22120 0.96352 0.89436 0.99971 1.61609 1.15782 1.14382 1.31062 1.20773 1.02900 0.87255 0.89588 1.22782 0.91314 0.94130 0.82005 1.68620 1.26223 1.11818 1.18567 1.18895 0.94257 0.88993 0.92706 1.20653 1.03211 0.94669 0.95797 1.20966 0.99053 0.93323 0.98057 1.20814 1.06769 0.99110 0.92852 1.20858 0.94479 0.93801 0.96971 1.20915 1.10890 0.95633 0.94370 1.18204 0.79696 0.82249 0.88326 1.90652 1.50135 1.58965 1.38236 1.42246 1.48710 1.07118 1.07889 1.19488 1.26707 1.10890 0.94159 0.87882 1.25395 0.92960 0.94691 1.00689 1.69799 1.14767 1.21405 1.37115 0.85975 0.79076 0.78302 0.81548 1.19898 1.20266 1.18884 1.22267 0.88216 1.03262 0.93072 1.22040 0.90684 0.93097 0.90404 0.93109 1.22276 0.96802 1.02978 1.01221 1.88186 1.73814 1.35230 1.29121 1.22676 0.97609 0.98031 0.88065 0.92976 0.91560 0.92455 0.95379 0.91284 0.92786 0.87621 0.85417 0.86710 0.86834 0.86107 0.91095 0.88186 0.95024 0.91510 0.92756 0.92159 0.94746 0.95385 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.79 37.16 0.36 -1.47 16 2 C 0.05 0.62 5.55 -3.82 -0.02 0.60 16 3 N -0.50 -7.94 3.92 -236.07 -0.92 -8.86 16 4 C 0.12 2.26 4.05 -4.98 -0.02 2.24 16 5 C 0.36 8.07 7.00 -154.87 -1.08 6.99 16 6 N -0.53 -11.51 7.68 -8.10 -0.06 -11.57 16 7 C 0.17 3.73 6.63 -84.50 -0.56 3.17 16 8 C -0.12 -2.34 10.03 -39.25 -0.39 -2.73 16 9 C -0.09 -1.57 10.00 -39.54 -0.40 -1.97 16 10 C -0.18 -3.10 10.02 -39.51 -0.40 -3.50 16 11 C -0.04 -0.89 9.68 -39.32 -0.38 -1.27 16 12 C -0.21 -5.08 5.89 -104.78 -0.62 -5.69 16 13 C 0.52 14.22 6.91 -12.47 -0.09 14.14 16 14 O -0.51 -15.13 14.37 5.17 0.07 -15.06 16 15 N -0.36 -9.10 2.67 -59.56 -0.16 -9.26 16 16 C -0.39 -9.81 8.23 -14.88 -0.12 -9.93 16 17 H 0.10 2.38 6.97 -52.49 -0.37 2.02 16 18 C 0.08 2.06 4.44 -17.49 -0.08 1.98 16 19 N -0.80 -22.55 11.55 55.50 0.64 -21.91 16 20 Si 0.93 19.87 29.59 -169.99 -5.03 14.84 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 24 C 0.06 0.89 4.22 -3.82 -0.02 0.87 16 25 C 0.10 1.23 2.62 -26.73 -0.07 1.16 16 26 H 0.05 0.58 5.96 -51.93 -0.31 0.27 16 27 C -0.17 -1.91 9.53 37.16 0.35 -1.56 16 28 O -0.35 -5.10 10.21 -35.23 -0.36 -5.46 16 29 C 0.03 0.37 10.82 101.05 1.09 1.47 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.06 0.76 6.72 -51.93 -0.35 0.41 16 33 H 0.03 0.34 8.09 -51.93 -0.42 -0.08 16 34 H 0.07 0.78 6.00 -51.93 -0.31 0.47 16 35 H 0.05 0.94 7.27 -51.93 -0.38 0.56 16 36 H 0.11 1.96 6.31 -51.93 -0.33 1.63 16 37 H 0.13 2.25 8.06 -52.49 -0.42 1.83 16 38 H 0.11 1.51 8.06 -52.48 -0.42 1.09 16 39 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 40 H 0.12 2.56 7.83 -52.49 -0.41 2.15 16 41 H 0.28 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.10 1.78 6.03 -51.93 -0.31 1.46 16 43 H 0.03 0.43 8.12 -51.93 -0.42 0.00 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.03 0.36 8.09 -51.92 -0.42 -0.06 16 48 H 0.03 0.26 7.87 -51.93 -0.41 -0.14 16 49 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 393.04 15.07 5.92 5.92 Total: -1.00 -31.63 393.04 -9.69 -41.32 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.36 Total: 5.53 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.43 Total: 4.50 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: -0.50 Total: -51.60 kcal Atomic # 8 Polarization: -20.23 SS G_CDS: -0.29 Total: -20.51 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.63 -9.69 -41.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812908440.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.938 kcal (2) G-P(sol) polarization free energy of solvation -31.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds