Wall clock time and date at job start Wed Apr 1 2020 04:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46902 * 109.47043 * 2 1 4 4 C 1.46899 * 111.00054 * 188.95319 * 3 2 1 5 5 C 1.53007 * 109.46869 * 171.04361 * 4 3 2 6 6 O 1.42902 * 109.46853 * 65.00416 * 5 4 3 7 7 N 1.36602 * 110.99770 * 65.00100 * 3 2 1 8 8 C 1.34784 * 119.99482 * 243.95514 * 7 3 2 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 3 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 3 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46414 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46956 * 300.00019 * 1 2 3 31 31 H 1.09001 * 109.46971 * 60.00478 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99981 * 2 1 3 33 33 H 1.08993 * 109.47270 * 119.99638 * 2 1 3 34 34 H 1.08992 * 109.47051 * 291.04556 * 4 3 2 35 35 H 1.09004 * 109.46842 * 51.05118 * 4 3 2 36 36 H 1.09003 * 109.46622 * 184.99831 * 5 4 3 37 37 H 1.08998 * 109.47321 * 305.00246 * 5 4 3 38 38 H 0.96697 * 113.99619 * 179.97438 * 6 5 4 39 39 H 0.96994 * 120.00077 * 63.95642 * 7 3 2 40 40 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 41 41 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 42 42 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 43 43 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 44 44 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 45 45 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 46 46 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 47 47 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 48 48 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 49 49 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8794 -0.4299 6 8 3.6816 3.6301 0.7641 7 7 1.6748 2.0262 1.1558 8 6 0.8411 3.0845 1.1163 9 8 0.3962 3.4691 0.0512 10 6 0.4705 3.7744 2.3593 11 6 0.8853 3.4631 3.6206 12 7 0.3340 4.3237 4.5098 13 6 0.5583 4.2877 5.9570 14 6 -0.5651 3.4947 6.6277 15 6 -0.3347 3.4583 8.1166 16 1 0.5267 3.9518 8.5420 17 6 -1.2269 2.8002 8.9364 18 7 -1.0286 2.7730 10.2363 19 14 -2.7170 1.9472 8.2008 20 1 -2.3691 0.5424 7.8680 21 1 -3.8308 1.9619 9.1830 22 1 -3.1359 2.6591 6.9667 23 6 -0.4737 5.2346 3.8608 24 6 -1.2439 6.3068 4.3002 25 6 -1.9556 7.0595 3.3921 26 6 -1.9086 6.7636 2.0373 27 6 -1.1475 5.7096 1.5821 28 6 -0.4238 4.9394 2.4892 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.9808 1.0228 0.6606 35 1 3.7290 0.8375 -1.0918 36 1 4.9732 2.9045 -0.6760 37 1 3.3384 3.3144 -1.2486 38 1 3.9379 4.5603 0.6993 39 1 2.0297 1.7198 2.0049 40 1 1.5528 2.6523 3.8727 41 1 0.5687 5.3050 6.3484 42 1 1.5152 3.8088 6.1647 43 1 -0.5755 2.4774 6.2363 44 1 -1.5220 3.9736 6.4202 45 1 -1.6561 2.3098 10.8129 46 1 -1.2874 6.5456 5.3525 47 1 -2.5561 7.8879 3.7381 48 1 -2.4720 7.3619 1.3365 49 1 -1.1129 5.4809 0.5271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000823879868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:17 Heat of formation + Delta-G solvation = 8.467358 kcal Electronic energy + Delta-G solvation = -30819.464762 eV Core-core repulsion = 26748.296633 eV Total energy + Delta-G solvation = -4071.168129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.24003 -39.71817 -37.33993 -36.90454 -36.27348 -34.10448 -32.59757 -32.12722 -31.38064 -30.60204 -29.03256 -28.78215 -27.22495 -25.29167 -23.15958 -22.53850 -22.41191 -21.61700 -21.28148 -20.33032 -19.57147 -17.68657 -17.58131 -17.03400 -16.84819 -16.35599 -16.03486 -15.33900 -15.22692 -14.89063 -14.52975 -14.43720 -14.15871 -14.07763 -13.65567 -13.63208 -13.44427 -13.19637 -13.07045 -12.79738 -12.72068 -12.45832 -12.32672 -11.96944 -11.96001 -11.45795 -11.34396 -11.30078 -11.27894 -11.17563 -10.68278 -10.40552 -10.26561 -10.15918 -9.99321 -9.51856 -9.48300 -9.26956 -8.99348 -8.88677 -8.72719 -7.96963 -7.35445 -6.23551 -4.25443 1.29009 1.85647 2.37415 2.76895 3.13331 3.19582 3.28628 3.33476 3.80968 4.07774 4.14857 4.28136 4.29591 4.84620 4.85406 4.90673 4.93787 4.96912 5.08329 5.08949 5.12799 5.18693 5.30185 5.31821 5.41350 5.44615 5.53927 5.60310 5.67931 5.73584 5.82973 5.86941 5.88521 5.97973 5.99790 6.16726 6.18003 6.34153 6.59161 6.70233 6.85665 6.89599 6.92621 6.95248 7.12142 7.40544 7.46958 7.48279 7.51252 7.60812 7.75291 8.26774 8.77000 8.87959 9.37094 10.88793 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003422 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.832537 B = 8179.692007 C = 9462.463933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.033 3.967 3 N -0.289 5.289 4 C 0.037 3.963 5 C 0.083 3.917 6 O -0.562 6.562 7 N -0.567 5.567 8 C 0.627 3.373 9 O -0.533 6.533 10 C -0.241 4.241 11 C 0.120 3.880 12 N -0.455 5.455 13 C 0.111 3.889 14 C -0.024 4.024 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.075 3.925 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.276 1.276 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.091 3.909 24 C -0.116 4.116 25 C -0.110 4.110 26 C -0.147 4.147 27 C -0.071 4.071 28 C -0.061 4.061 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.377 0.623 39 H 0.376 0.624 40 H 0.168 0.832 41 H 0.085 0.915 42 H 0.088 0.912 43 H 0.018 0.982 44 H 0.025 0.975 45 H 0.266 0.734 46 H 0.124 0.876 47 H 0.122 0.878 48 H 0.119 0.881 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.121 -0.370 -20.745 22.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 N -0.107 5.107 4 C -0.091 4.091 5 C 0.005 3.995 6 O -0.367 6.367 7 N -0.313 5.313 8 C 0.417 3.583 9 O -0.408 6.408 10 C -0.253 4.253 11 C -0.015 4.015 12 N -0.133 5.133 13 C -0.008 4.008 14 C -0.062 4.062 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.128 4.128 18 N -0.533 5.533 19 Si 0.703 3.297 20 H -0.201 1.201 21 H -0.210 1.210 22 H -0.189 1.189 23 C -0.014 4.014 24 C -0.136 4.136 25 C -0.129 4.129 26 C -0.166 4.166 27 C -0.089 4.089 28 C -0.065 4.065 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.223 0.777 39 H 0.214 0.786 40 H 0.185 0.815 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.036 0.964 44 H 0.043 0.957 45 H 0.076 0.924 46 H 0.142 0.858 47 H 0.140 0.860 48 H 0.137 0.863 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.335 -0.485 -21.138 22.380 hybrid contribution 0.199 -0.854 0.794 1.183 sum 7.534 -1.339 -20.345 21.736 Atomic orbital electron populations 1.21687 0.93925 1.01254 1.03361 1.22612 0.97521 0.88174 1.01176 1.62869 1.12233 1.14533 1.21040 1.22706 0.87948 0.96746 1.01748 1.22069 0.97845 0.91463 0.88128 1.86523 1.88420 1.25537 1.36235 1.44946 1.50380 1.32325 1.03620 1.16786 0.76479 0.77492 0.87535 1.90687 1.54257 1.64805 1.31099 1.19721 1.10419 1.03427 0.91756 1.22037 0.97028 0.94277 0.88184 1.44337 1.36657 1.24135 1.08171 1.22205 1.01694 1.03159 0.73768 1.19932 0.94060 0.95242 0.96958 1.20851 1.11478 1.35826 0.88641 0.90608 1.24941 0.97666 0.95530 0.94644 1.69887 1.37244 1.42846 1.03280 0.86822 0.82888 0.80404 0.79540 1.20125 1.21029 1.18890 1.18277 0.97554 0.94453 0.91138 1.20149 0.98600 0.94774 1.00122 1.20752 0.99568 0.99637 0.92930 1.20879 1.01438 0.98848 0.95459 1.20566 0.95189 0.93900 0.99285 1.18668 0.99628 0.96360 0.91870 0.92329 0.92484 0.91540 0.89762 0.94244 0.93422 0.88488 0.93667 0.92619 0.77679 0.78621 0.81494 0.89617 0.89396 0.96384 0.95685 0.92380 0.85847 0.86018 0.86344 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.98 37.16 0.37 -1.18 16 2 C 0.03 0.30 5.90 -3.82 -0.02 0.28 16 3 N -0.29 -3.23 4.28 -113.78 -0.49 -3.72 16 4 C 0.04 0.31 5.71 -3.82 -0.02 0.29 16 5 C 0.08 0.74 7.35 37.16 0.27 1.02 16 6 O -0.56 -5.91 11.29 -35.23 -0.40 -6.31 16 7 N -0.57 -7.02 2.67 30.32 0.08 -6.94 16 8 C 0.63 9.82 6.78 -12.74 -0.09 9.73 16 9 O -0.53 -9.96 16.48 5.22 0.09 -9.87 16 10 C -0.24 -3.88 6.27 -103.31 -0.65 -4.53 16 11 C 0.12 1.78 10.75 -16.62 -0.18 1.60 16 12 N -0.46 -7.65 2.74 -114.22 -0.31 -7.97 16 13 C 0.11 1.98 5.89 -4.05 -0.02 1.96 16 14 C -0.02 -0.53 4.36 -27.88 -0.12 -0.65 16 15 C -0.53 -13.99 9.66 -34.44 -0.33 -14.32 16 16 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 18 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 19 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.26 -6.28 6.54 56.52 0.37 -5.91 16 23 C 0.09 1.58 6.79 -83.96 -0.57 1.01 16 24 C -0.12 -1.88 9.97 -39.42 -0.39 -2.27 16 25 C -0.11 -1.55 10.01 -39.56 -0.40 -1.95 16 26 C -0.15 -2.07 10.03 -39.57 -0.40 -2.47 16 27 C -0.07 -1.14 9.85 -39.37 -0.39 -1.53 16 28 C -0.06 -1.05 6.27 -104.95 -0.66 -1.71 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.73 7.56 -51.93 -0.39 0.33 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.61 7.97 -51.93 -0.41 0.20 16 33 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.10 0.61 7.97 -51.93 -0.41 0.19 16 36 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.38 2.91 9.12 45.56 0.42 3.32 16 39 H 0.38 4.10 7.71 -185.16 -1.43 2.67 16 40 H 0.17 1.93 7.38 -52.49 -0.39 1.54 16 41 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 42 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 43 H 0.02 0.40 7.58 -51.93 -0.39 0.01 16 44 H 0.02 0.58 7.19 -51.93 -0.37 0.21 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 47 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 48 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 49 H 0.13 2.04 7.45 -52.48 -0.39 1.65 16 LS Contribution 406.20 15.07 6.12 6.12 Total: -1.00 -33.79 406.20 -10.51 -44.30 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -8.01 Total: 6.26 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.69 Total: -12.73 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.05 Total: -44.18 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.31 Total: -16.18 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.79 -10.51 -44.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823879868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.764 kcal (2) G-P(sol) polarization free energy of solvation -33.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds