Wall clock time and date at job start Wed Apr 1 2020 04:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46902 * 109.47043 * 2 1 4 4 C 1.46899 * 111.00054 * 188.95319 * 3 2 1 5 5 C 1.53007 * 109.46869 * 171.04361 * 4 3 2 6 6 O 1.42902 * 109.46853 * 65.00416 * 5 4 3 7 7 N 1.36602 * 110.99770 * 65.00100 * 3 2 1 8 8 C 1.34784 * 119.99482 * 243.95514 * 7 3 2 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 3 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 3 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46414 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46956 * 300.00019 * 1 2 3 31 31 H 1.09001 * 109.46971 * 60.00478 * 1 2 3 32 32 H 1.08998 * 109.46956 * 239.99981 * 2 1 3 33 33 H 1.08993 * 109.47270 * 119.99638 * 2 1 3 34 34 H 1.08992 * 109.47051 * 291.04556 * 4 3 2 35 35 H 1.09004 * 109.46842 * 51.05118 * 4 3 2 36 36 H 1.09003 * 109.46622 * 184.99831 * 5 4 3 37 37 H 1.08998 * 109.47321 * 305.00246 * 5 4 3 38 38 H 0.96697 * 113.99619 * 179.97438 * 6 5 4 39 39 H 0.96994 * 120.00077 * 63.95642 * 7 3 2 40 40 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 41 41 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 42 42 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 43 43 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 44 44 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 45 45 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 46 46 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 47 47 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 48 48 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 49 49 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4724 1.4298 -0.2134 5 6 3.9116 2.8794 -0.4299 6 8 3.6816 3.6301 0.7641 7 7 1.6748 2.0262 1.1558 8 6 0.8411 3.0845 1.1163 9 8 0.3962 3.4691 0.0512 10 6 0.4705 3.7744 2.3593 11 6 0.8853 3.4631 3.6206 12 7 0.3340 4.3237 4.5098 13 6 0.5583 4.2877 5.9570 14 6 -0.5651 3.4947 6.6277 15 6 -0.3347 3.4583 8.1166 16 1 0.5267 3.9518 8.5420 17 6 -1.2269 2.8002 8.9364 18 7 -1.0286 2.7730 10.2363 19 14 -2.7170 1.9472 8.2008 20 1 -2.3691 0.5424 7.8680 21 1 -3.8308 1.9619 9.1830 22 1 -3.1359 2.6591 6.9667 23 6 -0.4737 5.2346 3.8608 24 6 -1.2439 6.3068 4.3002 25 6 -1.9556 7.0595 3.3921 26 6 -1.9086 6.7636 2.0373 27 6 -1.1475 5.7096 1.5821 28 6 -0.4238 4.9394 2.4892 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8900 34 1 3.9808 1.0228 0.6606 35 1 3.7290 0.8375 -1.0918 36 1 4.9732 2.9045 -0.6760 37 1 3.3384 3.3144 -1.2486 38 1 3.9379 4.5603 0.6993 39 1 2.0297 1.7198 2.0049 40 1 1.5528 2.6523 3.8727 41 1 0.5687 5.3050 6.3484 42 1 1.5152 3.8088 6.1647 43 1 -0.5755 2.4774 6.2363 44 1 -1.5220 3.9736 6.4202 45 1 -1.6561 2.3098 10.8129 46 1 -1.2874 6.5456 5.3525 47 1 -2.5561 7.8879 3.7381 48 1 -2.4720 7.3619 1.3365 49 1 -1.1129 5.4809 0.5271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000823879868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:16 Heat of formation + Delta-G solvation = -13.218984 kcal Electronic energy + Delta-G solvation = -30820.405153 eV Core-core repulsion = 26748.296633 eV Total energy + Delta-G solvation = -4072.108520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.46102 -40.69194 -38.34773 -38.12088 -37.09124 -35.81573 -34.18004 -33.27361 -32.20772 -31.97756 -30.42141 -29.91914 -28.17681 -26.85064 -24.28067 -23.80917 -23.15160 -23.06719 -22.26494 -21.69454 -20.73646 -19.20429 -18.49159 -18.38518 -17.91329 -17.28109 -17.06238 -16.70541 -16.49482 -16.33938 -15.78145 -15.45165 -15.29293 -15.21705 -14.97578 -14.77523 -14.59212 -14.50856 -14.47395 -14.21083 -13.67962 -13.51714 -13.42417 -13.16724 -13.00468 -12.85788 -12.77059 -12.52308 -12.11080 -12.08492 -12.03946 -11.99718 -11.82528 -11.79859 -11.51914 -10.89681 -10.84019 -10.74048 -10.53610 -9.97217 -9.69695 -9.17981 -8.59191 -8.36100 -6.41142 0.09621 0.65933 1.15617 1.29502 1.34117 1.43457 1.77766 1.94002 2.28753 2.62744 2.99678 3.07063 3.33070 3.48941 3.71539 3.73945 3.85892 4.09722 4.19557 4.22587 4.26700 4.29100 4.32632 4.34868 4.37772 4.52781 4.54585 4.61499 4.62010 4.68183 4.78554 4.79228 4.84557 4.88356 4.94017 5.02941 5.12790 5.16922 5.20638 5.30312 5.49508 5.55574 5.68146 5.74689 5.86137 5.88032 6.13457 6.26231 6.28002 6.46329 6.66587 6.72310 6.88262 7.24528 7.81240 8.79414 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009720 B = 0.003422 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2879.832537 B = 8179.692007 C = 9462.463933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.034 3.966 3 N -0.314 5.314 4 C 0.036 3.964 5 C 0.081 3.919 6 O -0.582 6.582 7 N -0.553 5.553 8 C 0.629 3.371 9 O -0.572 6.572 10 C -0.254 4.254 11 C 0.127 3.873 12 N -0.462 5.462 13 C 0.125 3.875 14 C -0.017 4.017 15 C -0.528 4.528 16 H 0.050 0.950 17 C 0.020 3.980 18 N -0.940 5.940 19 Si 0.937 3.063 20 H -0.266 1.266 21 H -0.283 1.283 22 H -0.260 1.260 23 C 0.068 3.932 24 C -0.134 4.134 25 C -0.104 4.104 26 C -0.139 4.139 27 C -0.088 4.088 28 C -0.083 4.083 29 H 0.077 0.923 30 H 0.030 0.970 31 H 0.046 0.954 32 H 0.110 0.890 33 H 0.052 0.948 34 H 0.056 0.944 35 H 0.124 0.876 36 H 0.071 0.929 37 H 0.035 0.965 38 H 0.385 0.615 39 H 0.384 0.616 40 H 0.200 0.800 41 H 0.086 0.914 42 H 0.106 0.894 43 H 0.021 0.979 44 H 0.014 0.986 45 H 0.268 0.732 46 H 0.123 0.877 47 H 0.153 0.847 48 H 0.149 0.851 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.496 -1.205 -22.218 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.093 4.093 3 N -0.132 5.132 4 C -0.091 4.091 5 C 0.003 3.997 6 O -0.388 6.388 7 N -0.297 5.297 8 C 0.420 3.580 9 O -0.451 6.451 10 C -0.266 4.266 11 C -0.007 4.007 12 N -0.140 5.140 13 C 0.005 3.995 14 C -0.055 4.055 15 C -0.567 4.567 16 H 0.068 0.932 17 C -0.179 4.179 18 N -0.580 5.580 19 Si 0.762 3.238 20 H -0.191 1.191 21 H -0.208 1.208 22 H -0.184 1.184 23 C -0.036 4.036 24 C -0.154 4.154 25 C -0.123 4.123 26 C -0.157 4.157 27 C -0.106 4.106 28 C -0.088 4.088 29 H 0.096 0.904 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.053 0.947 38 H 0.233 0.767 39 H 0.223 0.777 40 H 0.217 0.783 41 H 0.104 0.896 42 H 0.124 0.876 43 H 0.039 0.961 44 H 0.032 0.968 45 H 0.077 0.923 46 H 0.141 0.859 47 H 0.171 0.829 48 H 0.167 0.833 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.742 -1.337 -22.623 23.948 hybrid contribution 0.127 -0.535 1.198 1.318 sum 7.869 -1.872 -21.424 22.900 Atomic orbital electron populations 1.21663 0.95407 1.01807 1.01088 1.22667 0.96202 0.87412 1.03012 1.62879 1.14169 1.15594 1.20518 1.22844 0.86175 0.96856 1.03255 1.22172 0.99080 0.91457 0.86974 1.86480 1.88787 1.26470 1.37097 1.44690 1.49133 1.31281 1.04624 1.16741 0.76583 0.77938 0.86770 1.90658 1.55993 1.66217 1.32227 1.19879 1.10695 1.03564 0.92503 1.22494 0.96592 0.94222 0.87383 1.44226 1.37341 1.24787 1.07656 1.21904 1.00693 1.02642 0.74296 1.19780 0.95209 0.95985 0.94522 1.21159 1.10191 1.34349 0.90975 0.93185 1.25751 1.00628 0.96586 0.94919 1.70012 1.38718 1.44556 1.04733 0.85856 0.79518 0.79690 0.78773 1.19071 1.20830 1.18406 1.18553 0.98382 0.95257 0.91412 1.20385 0.99251 0.95140 1.00645 1.21128 0.98799 0.99753 0.92629 1.21234 1.00384 0.98006 0.96110 1.20690 0.96107 0.94889 0.98939 1.18999 1.00369 0.97200 0.92209 0.90367 0.95031 0.93448 0.87228 0.92924 0.92601 0.85820 0.91054 0.94675 0.76681 0.77670 0.78293 0.89577 0.87584 0.96079 0.96775 0.92262 0.85863 0.82947 0.83293 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.98 71.98 0.72 -2.20 16 2 C 0.03 0.55 5.90 86.31 0.51 1.06 16 3 N -0.31 -6.52 4.28 -513.87 -2.20 -8.72 16 4 C 0.04 0.53 5.71 86.31 0.49 1.02 16 5 C 0.08 1.33 7.35 71.98 0.53 1.86 16 6 O -0.58 -11.69 11.29 -148.98 -1.68 -13.37 16 7 N -0.55 -13.14 2.67 -176.22 -0.47 -13.61 16 8 C 0.63 19.72 6.78 86.51 0.59 20.31 16 9 O -0.57 -21.88 16.48 -4.24 -0.07 -21.95 16 10 C -0.25 -8.14 6.27 -19.01 -0.12 -8.26 16 11 C 0.13 3.63 10.75 83.70 0.90 4.53 16 12 N -0.46 -15.10 2.74 -515.30 -1.41 -16.51 16 13 C 0.12 4.31 5.89 86.38 0.51 4.82 16 14 C -0.02 -0.73 4.36 29.85 0.13 -0.60 16 15 C -0.53 -27.99 9.66 25.60 0.25 -27.74 16 16 H 0.05 2.84 7.99 -2.91 -0.02 2.82 16 17 C 0.02 1.10 5.47 84.66 0.46 1.56 16 18 N -0.94 -56.07 13.96 21.45 0.30 -55.77 16 19 Si 0.94 43.21 27.47 68.60 1.88 45.09 16 20 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.26 -11.68 6.54 99.48 0.65 -11.03 16 23 C 0.07 2.35 6.79 38.92 0.26 2.62 16 24 C -0.13 -4.23 9.97 22.37 0.22 -4.01 16 25 C -0.10 -2.76 10.01 22.28 0.22 -2.54 16 26 C -0.14 -3.68 10.03 22.28 0.22 -3.46 16 27 C -0.09 -2.81 9.85 22.40 0.22 -2.59 16 28 C -0.08 -2.89 6.27 -20.08 -0.13 -3.02 16 29 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 0.79 7.56 -2.39 -0.02 0.77 16 31 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.11 1.25 7.97 -2.39 -0.02 1.23 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.12 1.14 7.97 -2.38 -0.02 1.12 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.39 5.80 9.12 -74.06 -0.68 5.12 16 39 H 0.38 7.71 7.71 -215.50 -1.66 6.05 16 40 H 0.20 4.12 7.38 -2.91 -0.02 4.09 16 41 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 42 H 0.11 3.27 8.11 -2.39 -0.02 3.25 16 43 H 0.02 0.90 7.58 -2.38 -0.02 0.88 16 44 H 0.01 0.64 7.19 -2.39 -0.02 0.62 16 45 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 46 H 0.12 3.79 8.06 -2.91 -0.02 3.77 16 47 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 48 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 49 H 0.12 3.96 7.45 -2.91 -0.02 3.93 16 Total: -1.00 -74.55 406.20 0.91 -73.64 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -1.43 Total: 27.82 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 6.00 Total: -16.63 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.79 Total: -94.60 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -1.75 Total: -35.32 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.09 kcal Total: -74.55 0.91 -73.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000823879868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.419 kcal (2) G-P(sol) polarization free energy of solvation -74.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds