Wall clock time and date at job start Wed Apr 1 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47235 * 2 1 4 4 C 1.34779 * 120.00131 * 276.77647 * 3 2 1 5 5 O 1.21344 * 120.00370 * 176.05262 * 4 3 2 6 6 C 1.49447 * 119.99899 * 356.05142 * 4 3 2 7 7 O 1.21356 * 120.00158 * 5.73256 * 6 4 3 8 8 N 1.34780 * 120.00451 * 185.73366 * 6 4 3 9 9 C 1.46492 * 120.00575 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.47327 * 179.97438 * 9 8 6 11 11 C 1.38626 * 119.75433 * 269.72496 * 10 9 8 12 12 C 1.37623 * 120.24937 * 179.71937 * 11 10 9 13 13 C 1.40710 * 119.74420 * 0.57396 * 12 11 10 14 14 C 1.41391 * 120.24620 * 179.68204 * 13 12 11 15 15 H 1.08007 * 120.00096 * 209.13868 * 14 13 12 16 16 C 1.39945 * 120.00114 * 29.13382 * 14 13 12 17 17 N 1.30821 * 119.99710 * 10.22615 * 16 14 13 18 18 Si 1.86798 * 120.00292 * 190.22543 * 16 14 13 19 19 H 1.48501 * 109.46838 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47180 * 120.00086 * 18 16 14 21 21 H 1.48505 * 109.47043 * 240.00371 * 18 16 14 22 22 C 1.40721 * 119.51232 * 359.70522 * 13 12 11 23 23 C 1.37620 * 119.74383 * 359.97438 * 22 13 12 24 24 C 1.46497 * 120.00085 * 96.77476 * 3 2 1 25 25 H 1.08999 * 110.76582 * 1.75076 * 24 3 2 26 26 C 1.55397 * 110.84455 * 125.01162 * 24 3 2 27 27 C 1.54915 * 101.73992 * 153.86222 * 26 24 3 28 28 N 1.47842 * 104.79650 * 323.02130 * 27 26 24 29 29 C 1.47440 * 108.56726 * 24.09103 * 28 27 26 30 30 H 1.08999 * 109.47557 * 59.99809 * 1 2 3 31 31 H 1.09005 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47164 * 299.99617 * 1 2 3 33 33 H 1.09009 * 109.46972 * 239.99958 * 2 1 3 34 34 H 1.08999 * 109.47557 * 120.00191 * 2 1 3 35 35 H 0.97000 * 119.99392 * 359.97438 * 8 6 4 36 36 H 1.08999 * 109.47156 * 300.00078 * 9 8 6 37 37 H 1.09004 * 109.47229 * 59.99481 * 9 8 6 38 38 H 1.07998 * 119.87519 * 359.97438 * 11 10 9 39 39 H 1.08003 * 120.12421 * 180.28383 * 12 11 10 40 40 H 0.97003 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.12969 * 180.02562 * 22 13 12 42 42 H 1.08000 * 119.87715 * 179.97438 * 23 22 13 43 43 H 1.08999 * 110.87228 * 35.77974 * 26 24 3 44 44 H 1.09001 * 111.03000 * 272.01582 * 26 24 3 45 45 H 1.08997 * 110.37084 * 204.18674 * 27 26 24 46 46 H 1.08998 * 110.46403 * 81.89848 * 27 26 24 47 47 H 1.00897 * 111.00311 * 146.36759 * 28 27 26 48 48 H 1.09004 * 109.88309 * 118.42172 * 29 28 27 49 49 H 1.09003 * 109.89141 * 239.44095 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1131 2.0624 -1.1591 5 8 2.4490 3.2284 -1.1518 6 6 1.8046 1.3818 -2.4533 7 8 1.3691 0.2490 -2.4544 8 7 2.0098 2.0259 -3.6192 9 6 1.7068 1.3590 -4.8879 10 6 2.0219 2.2881 -6.0317 11 6 1.0414 3.1398 -6.5164 12 6 1.3197 3.9966 -7.5568 13 6 2.6017 3.9974 -8.1367 14 6 2.8972 4.8685 -9.2105 15 1 3.6385 4.5888 -9.9445 16 6 2.2290 6.0930 -9.3223 17 7 1.4832 6.5235 -8.3375 18 14 2.4020 7.1128 -10.8778 19 1 3.2952 6.4100 -11.8336 20 1 1.0655 7.3027 -11.4964 21 1 2.9836 8.4367 -10.5396 22 6 3.5875 3.1244 -7.6404 23 6 3.2888 2.2809 -6.5948 24 6 2.4036 2.0219 1.2598 25 1 2.2970 1.3288 2.0943 26 6 3.8568 2.5667 1.1813 27 6 3.8186 3.7171 2.2181 28 7 2.4738 4.3134 2.0710 29 6 1.5699 3.2979 1.5003 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.3575 2.9315 -3.6183 36 1 2.3101 0.4555 -4.9765 37 1 0.6498 1.0942 -4.9158 38 1 0.0565 3.1338 -6.0732 39 1 0.5555 4.6625 -7.9298 40 1 1.0204 7.3725 -8.4148 41 1 4.5750 3.1170 -8.0777 42 1 4.0437 1.6098 -6.2125 43 1 4.0755 2.9473 0.1836 44 1 4.5774 1.8024 1.4726 45 1 4.5880 4.4559 1.9936 46 1 3.9520 3.3259 3.2266 47 1 2.1277 4.6483 2.9576 48 1 0.7613 3.0862 2.2000 49 1 1.1589 3.6558 0.5563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884730235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:31 Heat of formation + Delta-G solvation = -34.159978 kcal Electronic energy + Delta-G solvation = -30040.970114 eV Core-core repulsion = 25967.953525 eV Total energy + Delta-G solvation = -4073.016589 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.05440 -39.13284 -37.78744 -37.45145 -36.08640 -34.62761 -33.38538 -31.12430 -30.42856 -29.60992 -29.38967 -28.60752 -27.16969 -24.94181 -23.69280 -22.70878 -21.62609 -21.41468 -21.09314 -20.19832 -19.40480 -17.70194 -17.38222 -17.07497 -16.52776 -16.08447 -15.85633 -15.43476 -15.21318 -14.66816 -14.50495 -14.18146 -14.03438 -13.74024 -13.58155 -13.50496 -13.32333 -13.00994 -12.86917 -12.53445 -12.48898 -12.14017 -12.08322 -12.03758 -11.76093 -11.69828 -11.61926 -11.48197 -11.32652 -11.17609 -11.04624 -10.70748 -10.61510 -10.44315 -9.74293 -9.47372 -9.36042 -9.20225 -8.97941 -8.78202 -8.52282 -7.58289 -7.41280 -6.79869 -4.48274 1.55183 2.24870 2.66536 2.96946 3.04289 3.07021 3.09203 3.31291 3.63849 3.88329 4.01833 4.35089 4.45738 4.55946 4.60559 4.73469 4.85876 4.98766 5.04066 5.18492 5.27161 5.36590 5.51483 5.56857 5.57140 5.68930 5.69499 5.79556 5.82128 5.88281 5.95193 6.08913 6.16604 6.21601 6.31325 6.42333 6.60316 6.63284 6.85444 6.96883 6.99840 7.13573 7.15624 7.25915 7.46992 7.51227 7.71700 7.88897 7.96283 7.98058 8.18640 8.21416 8.54732 8.80058 8.85775 10.13501 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.002269 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.498770 B =12339.509548 C =13380.765407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.092 3.908 3 N -0.582 5.582 4 C 0.503 3.497 5 O -0.500 6.500 6 C 0.496 3.504 7 O -0.528 6.528 8 N -0.682 5.682 9 C 0.183 3.817 10 C -0.244 4.244 11 C -0.082 4.082 12 C -0.161 4.161 13 C 0.117 3.883 14 C -0.458 4.458 15 H 0.079 0.921 16 C 0.072 3.928 17 N -0.795 5.795 18 Si 0.912 3.088 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.274 1.274 22 C -0.225 4.225 23 C -0.071 4.071 24 C 0.126 3.874 25 H 0.097 0.903 26 C -0.146 4.146 27 C 0.052 3.948 28 N -0.674 5.674 29 C 0.040 3.960 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.117 0.883 34 H 0.068 0.932 35 H 0.413 0.587 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.281 0.719 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.337 0.663 48 H 0.049 0.951 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.012 -8.751 19.008 20.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.029 4.029 3 N -0.316 5.316 4 C 0.286 3.714 5 O -0.374 6.374 6 C 0.277 3.723 7 O -0.407 6.407 8 N -0.333 5.333 9 C 0.062 3.938 10 C -0.246 4.246 11 C -0.101 4.101 12 C -0.181 4.181 13 C 0.114 3.886 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.145 4.145 17 N -0.420 5.420 18 Si 0.737 3.263 19 H -0.184 1.184 20 H -0.197 1.197 21 H -0.199 1.199 22 C -0.244 4.244 23 C -0.090 4.090 24 C 0.021 3.979 25 H 0.115 0.885 26 C -0.184 4.184 27 C -0.077 4.077 28 N -0.303 5.303 29 C -0.090 4.090 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.135 0.865 34 H 0.087 0.913 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.139 0.861 40 H 0.092 0.908 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.059 0.941 47 H 0.152 0.848 48 H 0.067 0.933 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -0.133 -8.386 18.424 20.243 hybrid contribution -0.006 0.387 0.284 0.480 sum -0.139 -7.999 18.708 20.347 Atomic orbital electron populations 1.22072 0.95494 1.02281 1.01828 1.22185 0.95203 0.80966 1.04586 1.47780 1.63712 1.14820 1.05309 1.20411 0.79050 0.86768 0.85208 1.90807 1.44346 1.15349 1.86889 1.20117 0.80246 0.86553 0.85410 1.90619 1.45263 1.17868 1.86985 1.46497 1.62374 1.19321 1.05094 1.20119 0.99976 0.94100 0.79639 1.18954 0.96276 1.06389 1.03009 1.20583 0.96683 0.95760 0.97085 1.21374 0.97423 1.00267 0.99006 1.17708 0.90454 0.89603 0.90806 1.19686 1.19437 1.00815 1.08838 0.90297 1.25938 0.93224 0.98237 0.97144 1.69789 1.22939 1.19313 1.29990 0.86191 0.79113 0.79434 0.81589 1.18426 1.19708 1.19896 1.21037 0.98400 1.03818 1.01155 1.20411 0.94554 0.97705 0.96324 1.22456 0.95094 0.94767 0.85541 0.88539 1.23180 0.95369 0.97594 1.02286 1.22721 0.92175 0.95984 0.96833 1.61757 1.02226 1.35941 1.30424 1.22951 0.94498 0.90124 1.01472 0.91886 0.91539 0.93469 0.86495 0.91319 0.75006 0.91770 0.91712 0.89292 0.86095 0.90802 0.88771 0.89304 0.88456 0.90822 0.90036 0.94121 0.84779 0.93251 0.89107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.74 37.16 0.36 -1.17 16 2 C 0.09 0.90 5.72 -4.05 -0.02 0.88 16 3 N -0.58 -6.60 2.56 -164.39 -0.42 -7.02 16 4 C 0.50 7.23 6.79 -11.59 -0.08 7.15 16 5 O -0.50 -8.29 12.85 5.50 0.07 -8.22 16 6 C 0.50 7.64 7.67 -11.58 -0.09 7.55 16 7 O -0.53 -8.31 11.85 5.49 0.07 -8.24 16 8 N -0.68 -11.17 5.54 -61.91 -0.34 -11.52 16 9 C 0.18 3.14 5.79 -5.20 -0.03 3.11 16 10 C -0.24 -4.97 5.27 -104.33 -0.55 -5.52 16 11 C -0.08 -1.82 9.67 -39.66 -0.38 -2.20 16 12 C -0.16 -4.03 8.66 -38.87 -0.34 -4.37 16 13 C 0.12 3.01 5.55 -106.83 -0.59 2.42 16 14 C -0.46 -11.80 9.06 -37.74 -0.34 -12.15 16 15 H 0.08 1.96 7.87 -52.48 -0.41 1.54 16 16 C 0.07 1.77 5.26 -17.34 -0.09 1.68 16 17 N -0.79 -20.14 10.84 55.55 0.60 -19.54 16 18 Si 0.91 18.33 29.57 -169.99 -5.03 13.30 16 19 H -0.26 -5.18 7.11 56.52 0.40 -4.77 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 22 C -0.22 -5.28 9.80 -38.87 -0.38 -5.66 16 23 C -0.07 -1.50 9.67 -39.66 -0.38 -1.88 16 24 C 0.13 1.23 3.45 -65.97 -0.23 1.00 16 25 H 0.10 0.71 7.78 -51.93 -0.40 0.30 16 26 C -0.15 -1.47 6.41 -24.45 -0.16 -1.63 16 27 C 0.05 0.47 7.58 -2.30 -0.02 0.45 16 28 N -0.67 -6.99 7.39 -110.79 -0.82 -7.81 16 29 C 0.04 0.42 6.81 -2.84 -0.02 0.40 16 30 H 0.06 0.76 7.04 -51.93 -0.37 0.40 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.12 1.35 5.39 -51.93 -0.28 1.07 16 34 H 0.07 0.50 7.81 -51.93 -0.41 0.09 16 35 H 0.41 7.09 7.95 -40.82 -0.32 6.76 16 36 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 37 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.15 6.23 -52.48 -0.33 2.82 16 40 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 41 H 0.09 2.09 8.06 -52.49 -0.42 1.67 16 42 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 43 H 0.10 1.30 5.96 -51.93 -0.31 0.99 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.34 2.69 8.91 -39.29 -0.35 2.34 16 48 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.09 1.28 6.16 -51.93 -0.32 0.96 16 LS Contribution 393.36 15.07 5.93 5.93 Total: -1.00 -27.73 393.36 -10.56 -38.29 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -7.28 Total: 14.77 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -3.34 Total: -9.93 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: -0.98 Total: -45.90 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.14 Total: -16.46 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.03 Total: 13.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -27.73 -10.56 -38.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884730235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.135 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds