Wall clock time and date at job start Wed Apr 1 2020 05:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46494 * 109.47235 * 2 1 4 4 C 1.34779 * 120.00131 * 276.77647 * 3 2 1 5 5 O 1.21344 * 120.00370 * 176.05262 * 4 3 2 6 6 C 1.49447 * 119.99899 * 356.05142 * 4 3 2 7 7 O 1.21356 * 120.00158 * 5.73256 * 6 4 3 8 8 N 1.34780 * 120.00451 * 185.73366 * 6 4 3 9 9 C 1.46492 * 120.00575 * 180.02562 * 8 6 4 10 10 C 1.50699 * 109.47327 * 179.97438 * 9 8 6 11 11 C 1.38626 * 119.75433 * 269.72496 * 10 9 8 12 12 C 1.37623 * 120.24937 * 179.71937 * 11 10 9 13 13 C 1.40710 * 119.74420 * 0.57396 * 12 11 10 14 14 C 1.41391 * 120.24620 * 179.68204 * 13 12 11 15 15 H 1.08007 * 120.00096 * 209.13868 * 14 13 12 16 16 C 1.39945 * 120.00114 * 29.13382 * 14 13 12 17 17 N 1.30821 * 119.99710 * 10.22615 * 16 14 13 18 18 Si 1.86798 * 120.00292 * 190.22543 * 16 14 13 19 19 H 1.48501 * 109.46838 * 359.97438 * 18 16 14 20 20 H 1.48494 * 109.47180 * 120.00086 * 18 16 14 21 21 H 1.48505 * 109.47043 * 240.00371 * 18 16 14 22 22 C 1.40721 * 119.51232 * 359.70522 * 13 12 11 23 23 C 1.37620 * 119.74383 * 359.97438 * 22 13 12 24 24 C 1.46497 * 120.00085 * 96.77476 * 3 2 1 25 25 H 1.08999 * 110.76582 * 1.75076 * 24 3 2 26 26 C 1.55397 * 110.84455 * 125.01162 * 24 3 2 27 27 C 1.54915 * 101.73992 * 153.86222 * 26 24 3 28 28 N 1.47842 * 104.79650 * 323.02130 * 27 26 24 29 29 C 1.47440 * 108.56726 * 24.09103 * 28 27 26 30 30 H 1.08999 * 109.47557 * 59.99809 * 1 2 3 31 31 H 1.09005 * 109.47211 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47164 * 299.99617 * 1 2 3 33 33 H 1.09009 * 109.46972 * 239.99958 * 2 1 3 34 34 H 1.08999 * 109.47557 * 120.00191 * 2 1 3 35 35 H 0.97000 * 119.99392 * 359.97438 * 8 6 4 36 36 H 1.08999 * 109.47156 * 300.00078 * 9 8 6 37 37 H 1.09004 * 109.47229 * 59.99481 * 9 8 6 38 38 H 1.07998 * 119.87519 * 359.97438 * 11 10 9 39 39 H 1.08003 * 120.12421 * 180.28383 * 12 11 10 40 40 H 0.97003 * 120.00193 * 179.97438 * 17 16 14 41 41 H 1.07998 * 120.12969 * 180.02562 * 22 13 12 42 42 H 1.08000 * 119.87715 * 179.97438 * 23 22 13 43 43 H 1.08999 * 110.87228 * 35.77974 * 26 24 3 44 44 H 1.09001 * 111.03000 * 272.01582 * 26 24 3 45 45 H 1.08997 * 110.37084 * 204.18674 * 27 26 24 46 46 H 1.08998 * 110.46403 * 81.89848 * 27 26 24 47 47 H 1.00897 * 111.00311 * 146.36759 * 28 27 26 48 48 H 1.09004 * 109.88309 * 118.42172 * 29 28 27 49 49 H 1.09003 * 109.89141 * 239.44095 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1131 2.0624 -1.1591 5 8 2.4490 3.2284 -1.1518 6 6 1.8046 1.3818 -2.4533 7 8 1.3691 0.2490 -2.4544 8 7 2.0098 2.0259 -3.6192 9 6 1.7068 1.3590 -4.8879 10 6 2.0219 2.2881 -6.0317 11 6 1.0414 3.1398 -6.5164 12 6 1.3197 3.9966 -7.5568 13 6 2.6017 3.9974 -8.1367 14 6 2.8972 4.8685 -9.2105 15 1 3.6385 4.5888 -9.9445 16 6 2.2290 6.0930 -9.3223 17 7 1.4832 6.5235 -8.3375 18 14 2.4020 7.1128 -10.8778 19 1 3.2952 6.4100 -11.8336 20 1 1.0655 7.3027 -11.4964 21 1 2.9836 8.4367 -10.5396 22 6 3.5875 3.1244 -7.6404 23 6 3.2888 2.2809 -6.5948 24 6 2.4036 2.0219 1.2598 25 1 2.2970 1.3288 2.0943 26 6 3.8568 2.5667 1.1813 27 6 3.8186 3.7171 2.2181 28 7 2.4738 4.3134 2.0710 29 6 1.5699 3.2979 1.5003 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 2.3575 2.9315 -3.6183 36 1 2.3101 0.4555 -4.9765 37 1 0.6498 1.0942 -4.9158 38 1 0.0565 3.1338 -6.0732 39 1 0.5555 4.6625 -7.9298 40 1 1.0204 7.3725 -8.4148 41 1 4.5750 3.1170 -8.0777 42 1 4.0437 1.6098 -6.2125 43 1 4.0755 2.9473 0.1836 44 1 4.5774 1.8024 1.4726 45 1 4.5880 4.4559 1.9936 46 1 3.9520 3.3259 3.2266 47 1 2.1277 4.6483 2.9576 48 1 0.7613 3.0862 2.2000 49 1 1.1589 3.6558 0.5563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884730235.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:28 Heat of formation + Delta-G solvation = -52.124727 kcal Electronic energy + Delta-G solvation = -30041.749124 eV Core-core repulsion = 25967.953525 eV Total energy + Delta-G solvation = -4073.795599 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.12207 -40.28989 -39.43141 -38.50002 -37.13102 -36.09731 -35.00196 -32.13119 -31.91694 -31.20500 -30.40835 -29.54632 -28.70919 -26.30060 -25.00104 -23.69235 -22.92320 -22.45600 -22.35746 -21.84907 -20.59049 -19.24305 -18.73413 -18.00048 -17.48867 -17.18443 -17.14846 -16.99516 -16.37777 -16.02833 -15.77693 -15.64535 -15.17958 -15.10369 -14.94551 -14.55237 -14.25126 -14.21176 -13.84861 -13.82735 -13.69277 -13.63087 -13.43601 -13.25684 -12.97643 -12.82633 -12.74738 -12.58441 -12.52194 -12.39625 -12.35858 -12.14813 -12.09905 -11.51619 -11.50664 -11.29171 -11.12648 -10.35266 -10.19613 -9.82645 -9.40918 -9.28849 -9.24542 -8.61947 -6.40687 0.38363 0.76310 1.11520 1.32679 1.38328 1.52930 1.53087 2.14293 2.20140 2.46242 2.78200 3.29845 3.35268 3.60144 3.71442 3.84137 3.87299 4.10590 4.15786 4.26981 4.28318 4.34753 4.41699 4.48398 4.52739 4.63134 4.64076 4.69824 4.73811 4.86494 4.95840 5.01130 5.02990 5.03678 5.13441 5.14475 5.24128 5.33108 5.41121 5.43976 5.58701 5.67818 5.83477 5.87542 6.00411 6.08225 6.15918 6.29392 6.35243 6.51831 6.67193 6.71230 6.91604 6.97374 6.98998 8.33806 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015006 B = 0.002269 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.498770 B =12339.509548 C =13380.765407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.090 3.910 3 N -0.570 5.570 4 C 0.501 3.499 5 O -0.529 6.529 6 C 0.498 3.502 7 O -0.529 6.529 8 N -0.688 5.688 9 C 0.192 3.808 10 C -0.226 4.226 11 C -0.085 4.085 12 C -0.185 4.185 13 C 0.085 3.915 14 C -0.496 4.496 15 H 0.076 0.924 16 C 0.031 3.969 17 N -0.830 5.830 18 Si 0.985 3.015 19 H -0.257 1.257 20 H -0.265 1.265 21 H -0.268 1.268 22 C -0.239 4.239 23 C -0.070 4.070 24 C 0.125 3.875 25 H 0.136 0.864 26 C -0.146 4.146 27 C 0.055 3.945 28 N -0.696 5.696 29 C 0.042 3.958 30 H 0.032 0.968 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.071 0.929 46 H 0.072 0.928 47 H 0.350 0.650 48 H 0.072 0.928 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.254 -10.529 21.568 24.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 N -0.303 5.303 4 C 0.284 3.716 5 O -0.406 6.406 6 C 0.279 3.721 7 O -0.408 6.408 8 N -0.339 5.339 9 C 0.071 3.929 10 C -0.227 4.227 11 C -0.104 4.104 12 C -0.205 4.205 13 C 0.082 3.918 14 C -0.526 4.526 15 H 0.095 0.905 16 C -0.183 4.183 17 N -0.456 5.456 18 Si 0.806 3.194 19 H -0.181 1.181 20 H -0.189 1.189 21 H -0.192 1.192 22 C -0.258 4.258 23 C -0.089 4.089 24 C 0.022 3.978 25 H 0.154 0.846 26 C -0.185 4.185 27 C -0.074 4.074 28 N -0.327 5.327 29 C -0.088 4.088 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.078 0.922 44 H 0.114 0.886 45 H 0.089 0.911 46 H 0.090 0.910 47 H 0.167 0.833 48 H 0.090 0.910 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.101 -10.210 21.027 23.375 hybrid contribution -0.098 0.789 -0.314 0.855 sum 0.003 -9.422 20.714 22.756 Atomic orbital electron populations 1.22028 0.95307 1.02966 1.00932 1.22297 0.95261 0.79914 1.05619 1.47873 1.62202 1.15253 1.04964 1.20212 0.79282 0.86459 0.85677 1.90807 1.46048 1.16509 1.87222 1.20313 0.79766 0.86442 0.85576 1.90631 1.45061 1.17891 1.87174 1.46327 1.63122 1.19195 1.05248 1.19982 1.00624 0.93516 0.78810 1.19244 0.95377 1.05172 1.02936 1.20803 0.98006 0.95322 0.96292 1.21321 0.97113 1.01395 1.00624 1.18044 0.91292 0.90723 0.91719 1.19913 1.20868 1.02100 1.09709 0.90539 1.26773 0.92507 0.98932 1.00129 1.69856 1.23952 1.20056 1.31784 0.85111 0.79271 0.77632 0.77410 1.18093 1.18927 1.19242 1.21241 0.98385 1.04152 1.02028 1.20727 0.95529 0.97339 0.95273 1.22720 0.94475 0.95145 0.85499 0.84622 1.23149 0.96203 0.98535 1.00628 1.22726 0.91181 0.95384 0.98091 1.61619 1.02904 1.36603 1.31623 1.22818 0.95348 0.90443 1.00209 0.94919 0.90080 0.92184 0.88225 0.87526 0.75502 0.90371 0.91160 0.87666 0.88027 0.90258 0.88195 0.86270 0.92225 0.88636 0.91081 0.90973 0.83281 0.90966 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.74 71.98 0.70 -1.88 16 2 C 0.09 1.49 5.72 86.38 0.49 1.98 16 3 N -0.57 -11.80 2.56 -792.38 -2.03 -13.83 16 4 C 0.50 14.20 6.79 87.27 0.59 14.79 16 5 O -0.53 -17.95 12.85 -3.23 -0.04 -17.99 16 6 C 0.50 14.97 7.67 87.27 0.67 15.64 16 7 O -0.53 -15.92 11.85 -3.26 -0.04 -15.96 16 8 N -0.69 -22.13 5.54 -468.15 -2.59 -24.72 16 9 C 0.19 6.32 5.79 85.63 0.50 6.81 16 10 C -0.23 -9.03 5.27 -19.68 -0.10 -9.14 16 11 C -0.09 -3.83 9.67 22.22 0.21 -3.61 16 12 C -0.18 -9.63 8.66 22.73 0.20 -9.43 16 13 C 0.08 4.53 5.55 -21.29 -0.12 4.41 16 14 C -0.50 -26.68 9.06 23.46 0.21 -26.47 16 15 H 0.08 3.97 7.87 -2.91 -0.02 3.94 16 16 C 0.03 1.55 5.26 85.26 0.45 1.99 16 17 N -0.83 -43.81 10.84 21.83 0.24 -43.57 16 18 Si 0.98 38.49 29.57 68.60 2.03 40.52 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 20 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 21 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 22 C -0.24 -11.42 9.80 22.73 0.22 -11.19 16 23 C -0.07 -2.91 9.67 22.22 0.21 -2.69 16 24 C 0.13 2.08 3.45 46.26 0.16 2.24 16 25 H 0.14 1.26 7.78 -2.39 -0.02 1.24 16 26 C -0.15 -2.68 6.41 32.07 0.21 -2.47 16 27 C 0.05 0.88 7.58 86.78 0.66 1.54 16 28 N -0.70 -13.44 7.39 -504.43 -3.73 -17.16 16 29 C 0.04 0.83 6.81 86.65 0.59 1.42 16 30 H 0.03 0.74 7.04 -2.39 -0.02 0.73 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 2.07 5.39 -2.40 -0.01 2.05 16 34 H 0.11 1.02 7.81 -2.39 -0.02 1.00 16 35 H 0.41 14.10 7.95 -92.71 -0.74 13.36 16 36 H 0.08 2.39 8.08 -2.39 -0.02 2.37 16 37 H 0.07 2.26 8.08 -2.38 -0.02 2.24 16 38 H 0.11 4.29 8.06 -2.91 -0.02 4.26 16 39 H 0.10 5.60 6.23 -2.91 -0.02 5.59 16 40 H 0.29 13.73 8.30 -92.71 -0.77 12.97 16 41 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.12 4.20 8.06 -2.91 -0.02 4.17 16 43 H 0.06 1.58 5.96 -2.39 -0.01 1.57 16 44 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.35 4.89 8.91 -89.70 -0.80 4.09 16 48 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 49 H 0.05 1.42 6.16 -2.39 -0.01 1.41 16 Total: -1.00 -63.91 393.36 -0.86 -64.77 By element: Atomic # 1 Polarization: 44.56 SS G_CDS: -0.55 Total: 44.02 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 5.85 Total: -16.07 kcal Atomic # 7 Polarization: -91.18 SS G_CDS: -8.11 Total: -99.29 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -0.08 Total: -33.95 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Total: -63.91 -0.86 -64.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884730235.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.647 kcal (2) G-P(sol) polarization free energy of solvation -63.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds