Wall clock time and date at job start Wed Apr 1 2020 05:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46960 * 2 1 4 4 C 1.34786 * 119.99988 * 274.06690 * 3 2 1 5 5 O 1.21346 * 119.99633 * 184.96782 * 4 3 2 6 6 C 1.49447 * 119.99853 * 4.96698 * 4 3 2 7 7 O 1.21352 * 119.99936 * 5.61071 * 6 4 3 8 8 N 1.34772 * 119.99782 * 185.61282 * 6 4 3 9 9 C 1.46506 * 120.00189 * 180.02562 * 8 6 4 10 10 C 1.50696 * 109.47442 * 179.97438 * 9 8 6 11 11 C 1.38634 * 119.74828 * 269.73108 * 10 9 8 12 12 C 1.37616 * 120.24775 * 179.72249 * 11 10 9 13 13 C 1.40718 * 119.74503 * 0.52363 * 12 11 10 14 14 C 1.41396 * 120.24438 * 179.73001 * 13 12 11 15 15 H 1.08002 * 119.99715 * 209.06312 * 14 13 12 16 16 C 1.39942 * 120.00406 * 29.05652 * 14 13 12 17 17 N 1.30828 * 119.99860 * 11.37172 * 16 14 13 18 18 Si 1.86792 * 120.00298 * 191.36604 * 16 14 13 19 19 H 1.48495 * 109.47190 * 90.00211 * 18 16 14 20 20 H 1.48497 * 109.47436 * 210.00382 * 18 16 14 21 21 H 1.48501 * 109.47193 * 330.00350 * 18 16 14 22 22 C 1.40715 * 119.51224 * 359.74632 * 13 12 11 23 23 C 1.37619 * 119.74283 * 0.02562 * 22 13 12 24 24 C 1.46502 * 120.00037 * 94.06318 * 3 2 1 25 25 H 1.08997 * 110.78268 * 3.24997 * 24 3 2 26 26 C 1.54594 * 110.72397 * 240.00126 * 24 3 2 27 27 C 1.53998 * 105.14076 * 219.68623 * 26 24 3 28 28 N 1.47906 * 107.05652 * 358.77531 * 27 26 24 29 29 C 1.48535 * 105.81812 * 25.33152 * 28 27 26 30 30 H 1.08994 * 109.47486 * 60.00083 * 1 2 3 31 31 H 1.09005 * 109.46695 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47082 * 299.99851 * 1 2 3 33 33 H 1.09005 * 109.47082 * 240.00149 * 2 1 3 34 34 H 1.08994 * 109.47486 * 119.99917 * 2 1 3 35 35 H 0.97000 * 120.00051 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.46810 * 299.99964 * 9 8 6 37 37 H 1.08997 * 109.46915 * 59.99547 * 9 8 6 38 38 H 1.07995 * 119.87702 * 359.97348 * 11 10 9 39 39 H 1.08005 * 120.12779 * 180.27317 * 12 11 10 40 40 H 0.96994 * 120.00333 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.13067 * 179.97438 * 22 13 12 42 42 H 1.07998 * 119.87765 * 180.02562 * 23 22 13 43 43 H 1.08996 * 110.30957 * 100.76622 * 26 24 3 44 44 H 1.09006 * 110.31194 * 338.59858 * 26 24 3 45 45 H 1.08998 * 109.92198 * 118.12731 * 27 26 24 46 46 H 1.09002 * 109.91916 * 239.42382 * 27 26 24 47 47 H 1.00892 * 111.00059 * 145.84820 * 28 27 26 48 48 H 1.09000 * 110.66666 * 79.23252 * 29 28 27 49 49 H 1.09004 * 110.66422 * 202.19058 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1648 2.0442 -1.1643 5 8 2.6536 3.1548 -1.1727 6 6 1.7254 1.4114 -2.4449 7 8 1.1447 0.3460 -2.4273 8 7 1.9741 2.0240 -3.6193 9 6 1.5428 1.4041 -4.8748 10 6 1.9386 2.2846 -6.0319 11 6 1.0629 3.2587 -6.4859 12 6 1.4160 4.0723 -7.5381 13 6 2.6669 3.9052 -8.1606 14 6 3.0383 4.7316 -9.2463 15 1 3.7123 4.3583 -10.0031 16 6 2.5324 6.0330 -9.3402 17 7 1.9013 6.5643 -8.3248 18 14 2.7583 7.0115 -10.9152 19 1 1.6073 6.7650 -11.8205 20 1 2.8329 8.4590 -10.5923 21 1 4.0143 6.5884 -11.5850 22 6 3.5454 2.9095 -7.6949 23 6 3.1732 2.1105 -6.6381 24 6 2.3472 2.0419 1.2656 25 1 2.2286 1.3544 2.1030 26 6 1.4769 3.3037 1.4663 27 6 2.4249 4.3535 2.0752 28 7 3.7445 3.7051 2.2356 29 6 3.7858 2.6158 1.2266 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.4379 2.8758 -3.6334 36 1 2.0184 0.4290 -4.9805 37 1 0.4599 1.2811 -4.8660 38 1 0.1016 3.3822 -6.0095 39 1 0.7341 4.8335 -7.8875 40 1 1.5510 7.4664 -8.3897 41 1 4.5077 2.7723 -8.1655 42 1 3.8459 1.3459 -6.2786 43 1 0.6562 3.0922 2.1517 44 1 1.0905 3.6532 0.5088 45 1 2.5106 5.2093 1.4057 46 1 2.0485 4.6747 3.0465 47 1 4.4925 4.3655 2.0856 48 1 4.0142 3.0152 0.2385 49 1 4.5137 1.8558 1.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884730236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:36 Heat of formation + Delta-G solvation = -36.437232 kcal Electronic energy + Delta-G solvation = -30067.762600 eV Core-core repulsion = 25994.647261 eV Total energy + Delta-G solvation = -4073.115338 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.11012 -39.14976 -37.80555 -37.47113 -36.12456 -34.66097 -33.41947 -31.08384 -30.46613 -29.69512 -29.42631 -28.57414 -27.18889 -24.93982 -23.69987 -22.78743 -21.78758 -21.19473 -21.11907 -20.22948 -19.41990 -17.75369 -17.41211 -17.19976 -16.39578 -16.03846 -15.82341 -15.43254 -15.23651 -14.78468 -14.48552 -14.15698 -14.01898 -13.95517 -13.75649 -13.60926 -13.36552 -13.07798 -12.62811 -12.55916 -12.35779 -12.23338 -12.16469 -12.07331 -11.75636 -11.71753 -11.59780 -11.45449 -11.21852 -11.16175 -11.08104 -10.73373 -10.68021 -10.48259 -9.77952 -9.50764 -9.40888 -9.24590 -9.03874 -8.81675 -8.65679 -7.61750 -7.45220 -6.83945 -4.51314 1.48021 2.21661 2.63769 2.93526 3.01558 3.04397 3.06034 3.25597 3.57929 3.85440 4.14013 4.34304 4.48119 4.50691 4.65726 4.75922 4.88212 5.05786 5.16607 5.22084 5.35227 5.48373 5.53238 5.53549 5.63447 5.66186 5.75423 5.76459 5.77672 5.82410 5.84200 6.08410 6.16494 6.18413 6.27850 6.28757 6.55028 6.58815 6.82201 6.92794 6.96644 7.03151 7.12061 7.22079 7.41934 7.47749 7.67515 7.83161 7.92782 7.94371 8.14734 8.17494 8.51097 8.76587 8.82348 10.09958 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002277 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.898606 B =12291.452739 C =13397.077269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.582 5.582 4 C 0.506 3.494 5 O -0.514 6.514 6 C 0.494 3.506 7 O -0.525 6.525 8 N -0.682 5.682 9 C 0.183 3.817 10 C -0.245 4.245 11 C -0.082 4.082 12 C -0.162 4.162 13 C 0.118 3.882 14 C -0.459 4.459 15 H 0.079 0.921 16 C 0.073 3.927 17 N -0.795 5.795 18 Si 0.913 3.087 19 H -0.267 1.267 20 H -0.277 1.277 21 H -0.262 1.262 22 C -0.225 4.225 23 C -0.071 4.071 24 C 0.144 3.856 25 H 0.105 0.895 26 C -0.140 4.140 27 C 0.046 3.954 28 N -0.670 5.670 29 C 0.016 3.984 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.046 0.954 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.412 0.588 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.282 0.718 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.341 0.659 48 H 0.078 0.922 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.983 -7.316 17.242 18.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.019 4.019 3 N -0.316 5.316 4 C 0.290 3.710 5 O -0.390 6.390 6 C 0.275 3.725 7 O -0.404 6.404 8 N -0.334 5.334 9 C 0.062 3.938 10 C -0.247 4.247 11 C -0.101 4.101 12 C -0.181 4.181 13 C 0.115 3.885 14 C -0.488 4.488 15 H 0.097 0.903 16 C -0.145 4.145 17 N -0.420 5.420 18 Si 0.737 3.263 19 H -0.192 1.192 20 H -0.202 1.202 21 H -0.186 1.186 22 C -0.244 4.244 23 C -0.089 4.089 24 C 0.040 3.960 25 H 0.123 0.877 26 C -0.179 4.179 27 C -0.084 4.084 28 N -0.299 5.299 29 C -0.114 4.114 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.123 0.877 34 H 0.090 0.910 35 H 0.249 0.751 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.093 0.907 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.156 0.844 48 H 0.096 0.904 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.416 -7.672 17.886 19.513 hybrid contribution 0.339 1.499 -1.439 2.106 sum -1.077 -6.173 16.446 17.599 Atomic orbital electron populations 1.22106 0.95277 1.02348 1.02054 1.21980 0.95443 0.80586 1.03880 1.47877 1.63786 1.14945 1.04959 1.20456 0.79493 0.85850 0.85235 1.90704 1.42038 1.19453 1.86815 1.20070 0.81470 0.85749 0.85236 1.90680 1.41413 1.21333 1.86954 1.46495 1.56523 1.25119 1.05238 1.20119 0.98832 0.94968 0.79896 1.18949 0.98360 1.04818 1.02569 1.20576 0.97221 0.95196 0.97106 1.21346 0.97263 1.00754 0.98742 1.17702 0.90084 0.89800 0.90911 1.19662 1.24751 0.96890 1.07539 0.90290 1.25937 0.92965 0.98301 0.97286 1.69785 1.27573 1.15223 1.29411 0.86232 0.79924 0.78480 0.81645 1.19241 1.20218 1.18589 1.21036 0.99486 1.02885 1.01036 1.20413 0.94629 0.97769 0.96137 1.22048 0.94532 0.94471 0.84902 0.87724 1.22741 0.98275 0.94901 1.01938 1.22542 0.89695 0.96147 1.00030 1.63043 1.04287 1.13374 1.49231 1.23529 0.96238 0.95061 0.96604 0.91315 0.91653 0.93500 0.87720 0.91026 0.75106 0.91735 0.91721 0.89312 0.86229 0.90738 0.88755 0.89287 0.90842 0.90414 0.93572 0.90532 0.84388 0.90438 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 9.67 37.16 0.36 -1.19 16 2 C 0.10 1.00 5.69 -4.04 -0.02 0.98 16 3 N -0.58 -6.52 2.55 -164.50 -0.42 -6.94 16 4 C 0.51 7.07 6.81 -11.58 -0.08 6.99 16 5 O -0.51 -8.09 12.86 5.50 0.07 -8.02 16 6 C 0.49 7.45 7.65 -11.59 -0.09 7.36 16 7 O -0.53 -8.13 11.43 5.50 0.06 -8.07 16 8 N -0.68 -10.94 5.54 -61.91 -0.34 -11.29 16 9 C 0.18 3.09 5.79 -5.19 -0.03 3.06 16 10 C -0.25 -4.92 5.27 -104.33 -0.55 -5.47 16 11 C -0.08 -1.79 9.67 -39.66 -0.38 -2.18 16 12 C -0.16 -4.00 8.66 -38.87 -0.34 -4.33 16 13 C 0.12 3.00 5.54 -106.82 -0.59 2.41 16 14 C -0.46 -11.72 9.06 -37.74 -0.34 -12.06 16 15 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 16 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 17 N -0.79 -19.94 10.90 55.55 0.61 -19.33 16 18 Si 0.91 18.16 29.57 -169.99 -5.03 13.13 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 21 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 22 C -0.22 -5.23 9.80 -38.87 -0.38 -5.61 16 23 C -0.07 -1.47 9.67 -39.66 -0.38 -1.86 16 24 C 0.14 1.45 3.55 -66.07 -0.23 1.21 16 25 H 0.10 0.87 7.81 -51.93 -0.41 0.47 16 26 C -0.14 -1.42 6.20 -25.37 -0.16 -1.58 16 27 C 0.05 0.44 7.52 -2.75 -0.02 0.42 16 28 N -0.67 -6.63 7.51 -110.08 -0.83 -7.46 16 29 C 0.02 0.17 6.87 -1.90 -0.01 0.15 16 30 H 0.07 0.84 6.49 -51.93 -0.34 0.51 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.10 1.18 5.82 -51.93 -0.30 0.87 16 34 H 0.07 0.52 7.85 -51.93 -0.41 0.11 16 35 H 0.41 6.89 7.95 -40.82 -0.32 6.57 16 36 H 0.06 1.05 8.08 -51.93 -0.42 0.63 16 37 H 0.06 1.08 8.08 -51.93 -0.42 0.66 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 39 H 0.12 3.08 6.27 -52.48 -0.33 2.75 16 40 H 0.28 6.45 8.30 -40.82 -0.34 6.12 16 41 H 0.09 2.08 8.06 -52.49 -0.42 1.66 16 42 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 0.97 6.60 -51.93 -0.34 0.63 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.34 3.05 8.92 -39.30 -0.35 2.70 16 48 H 0.08 1.02 5.47 -51.93 -0.28 0.73 16 49 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 392.85 15.07 5.92 5.92 Total: -1.00 -26.65 392.85 -10.58 -37.23 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -7.27 Total: 14.84 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -3.35 Total: -10.02 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: -0.98 Total: -45.02 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: 0.13 Total: -16.09 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -26.65 -10.58 -37.23 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884730236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.793 kcal (2) G-P(sol) polarization free energy of solvation -26.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds