Wall clock time and date at job start Wed Apr 1 2020 05:01:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.46960 * 2 1 4 4 C 1.34786 * 119.99988 * 274.06690 * 3 2 1 5 5 O 1.21346 * 119.99633 * 184.96782 * 4 3 2 6 6 C 1.49447 * 119.99853 * 4.96698 * 4 3 2 7 7 O 1.21352 * 119.99936 * 5.61071 * 6 4 3 8 8 N 1.34772 * 119.99782 * 185.61282 * 6 4 3 9 9 C 1.46506 * 120.00189 * 180.02562 * 8 6 4 10 10 C 1.50696 * 109.47442 * 179.97438 * 9 8 6 11 11 C 1.38634 * 119.74828 * 269.73108 * 10 9 8 12 12 C 1.37616 * 120.24775 * 179.72249 * 11 10 9 13 13 C 1.40718 * 119.74503 * 0.52363 * 12 11 10 14 14 C 1.41396 * 120.24438 * 179.73001 * 13 12 11 15 15 H 1.08002 * 119.99715 * 209.06312 * 14 13 12 16 16 C 1.39942 * 120.00406 * 29.05652 * 14 13 12 17 17 N 1.30828 * 119.99860 * 11.37172 * 16 14 13 18 18 Si 1.86792 * 120.00298 * 191.36604 * 16 14 13 19 19 H 1.48495 * 109.47190 * 90.00211 * 18 16 14 20 20 H 1.48497 * 109.47436 * 210.00382 * 18 16 14 21 21 H 1.48501 * 109.47193 * 330.00350 * 18 16 14 22 22 C 1.40715 * 119.51224 * 359.74632 * 13 12 11 23 23 C 1.37619 * 119.74283 * 0.02562 * 22 13 12 24 24 C 1.46502 * 120.00037 * 94.06318 * 3 2 1 25 25 H 1.08997 * 110.78268 * 3.24997 * 24 3 2 26 26 C 1.54594 * 110.72397 * 240.00126 * 24 3 2 27 27 C 1.53998 * 105.14076 * 219.68623 * 26 24 3 28 28 N 1.47906 * 107.05652 * 358.77531 * 27 26 24 29 29 C 1.48535 * 105.81812 * 25.33152 * 28 27 26 30 30 H 1.08994 * 109.47486 * 60.00083 * 1 2 3 31 31 H 1.09005 * 109.46695 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47082 * 299.99851 * 1 2 3 33 33 H 1.09005 * 109.47082 * 240.00149 * 2 1 3 34 34 H 1.08994 * 109.47486 * 119.99917 * 2 1 3 35 35 H 0.97000 * 120.00051 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.46810 * 299.99964 * 9 8 6 37 37 H 1.08997 * 109.46915 * 59.99547 * 9 8 6 38 38 H 1.07995 * 119.87702 * 359.97348 * 11 10 9 39 39 H 1.08005 * 120.12779 * 180.27317 * 12 11 10 40 40 H 0.96994 * 120.00333 * 179.97438 * 17 16 14 41 41 H 1.07997 * 120.13067 * 179.97438 * 22 13 12 42 42 H 1.07998 * 119.87765 * 180.02562 * 23 22 13 43 43 H 1.08996 * 110.30957 * 100.76622 * 26 24 3 44 44 H 1.09006 * 110.31194 * 338.59858 * 26 24 3 45 45 H 1.08998 * 109.92198 * 118.12731 * 27 26 24 46 46 H 1.09002 * 109.91916 * 239.42382 * 27 26 24 47 47 H 1.00892 * 111.00059 * 145.84820 * 28 27 26 48 48 H 1.09000 * 110.66666 * 79.23252 * 29 28 27 49 49 H 1.09004 * 110.66422 * 202.19058 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1648 2.0442 -1.1643 5 8 2.6536 3.1548 -1.1727 6 6 1.7254 1.4114 -2.4449 7 8 1.1447 0.3460 -2.4273 8 7 1.9741 2.0240 -3.6193 9 6 1.5428 1.4041 -4.8748 10 6 1.9386 2.2846 -6.0319 11 6 1.0629 3.2587 -6.4859 12 6 1.4160 4.0723 -7.5381 13 6 2.6669 3.9052 -8.1606 14 6 3.0383 4.7316 -9.2463 15 1 3.7123 4.3583 -10.0031 16 6 2.5324 6.0330 -9.3402 17 7 1.9013 6.5643 -8.3248 18 14 2.7583 7.0115 -10.9152 19 1 1.6073 6.7650 -11.8205 20 1 2.8329 8.4590 -10.5923 21 1 4.0143 6.5884 -11.5850 22 6 3.5454 2.9095 -7.6949 23 6 3.1732 2.1105 -6.6381 24 6 2.3472 2.0419 1.2656 25 1 2.2286 1.3544 2.1030 26 6 1.4769 3.3037 1.4663 27 6 2.4249 4.3535 2.0752 28 7 3.7445 3.7051 2.2356 29 6 3.7858 2.6158 1.2266 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 2.4379 2.8758 -3.6334 36 1 2.0184 0.4290 -4.9805 37 1 0.4599 1.2811 -4.8660 38 1 0.1016 3.3822 -6.0095 39 1 0.7341 4.8335 -7.8875 40 1 1.5510 7.4664 -8.3897 41 1 4.5077 2.7723 -8.1655 42 1 3.8459 1.3459 -6.2786 43 1 0.6562 3.0922 2.1517 44 1 1.0905 3.6532 0.5088 45 1 2.5106 5.2093 1.4057 46 1 2.0485 4.6747 3.0465 47 1 4.4925 4.3655 2.0856 48 1 4.0142 3.0152 0.2385 49 1 4.5137 1.8558 1.5106 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884730236.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:34 Heat of formation + Delta-G solvation = -53.056330 kcal Electronic energy + Delta-G solvation = -30068.483258 eV Core-core repulsion = 25994.647261 eV Total energy + Delta-G solvation = -4073.835997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.16414 -40.30944 -39.44002 -38.49881 -37.15560 -36.11358 -35.01425 -32.14426 -31.88319 -31.21796 -30.51640 -29.54241 -28.70235 -26.29020 -24.98123 -23.75900 -22.93788 -22.70103 -22.10245 -21.85643 -20.58170 -19.25051 -18.79808 -18.13972 -17.43064 -17.25329 -17.06736 -16.87968 -16.25121 -16.09064 -15.81894 -15.65932 -15.23150 -15.09352 -14.92403 -14.75344 -14.52947 -14.22056 -13.92509 -13.85821 -13.67171 -13.50619 -13.42912 -13.15120 -13.08879 -12.84347 -12.76129 -12.56047 -12.52950 -12.40547 -12.32254 -12.11967 -12.01802 -11.56180 -11.52456 -11.30315 -11.12418 -10.44243 -10.18212 -9.86725 -9.50731 -9.41917 -9.26148 -8.63911 -6.41502 0.34076 0.75366 1.10415 1.31260 1.37637 1.50015 1.52761 2.10844 2.19118 2.42569 2.76105 3.28685 3.38696 3.62764 3.70405 3.71094 3.97677 4.09747 4.13956 4.27393 4.27897 4.37441 4.44152 4.47451 4.57900 4.62914 4.67903 4.71449 4.75591 4.84017 4.95158 4.96861 5.01515 5.03254 5.07444 5.13375 5.20755 5.31924 5.39961 5.43114 5.48201 5.66681 5.73259 5.84484 5.95544 6.06939 6.14703 6.25618 6.28635 6.34256 6.65638 6.67217 6.90415 6.94865 6.97717 8.32216 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015011 B = 0.002277 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.898606 B =12291.452739 C =13397.077269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.570 5.570 4 C 0.505 3.495 5 O -0.538 6.538 6 C 0.496 3.504 7 O -0.526 6.526 8 N -0.688 5.688 9 C 0.192 3.808 10 C -0.226 4.226 11 C -0.085 4.085 12 C -0.185 4.185 13 C 0.086 3.914 14 C -0.497 4.497 15 H 0.077 0.923 16 C 0.032 3.968 17 N -0.829 5.829 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.258 1.258 22 C -0.239 4.239 23 C -0.070 4.070 24 C 0.143 3.857 25 H 0.134 0.866 26 C -0.139 4.139 27 C 0.045 3.955 28 N -0.667 5.667 29 C 0.017 3.983 30 H 0.038 0.962 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.409 0.591 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.287 0.713 41 H 0.100 0.900 42 H 0.119 0.881 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.031 0.969 46 H 0.093 0.907 47 H 0.345 0.655 48 H 0.050 0.950 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 -8.848 19.430 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.303 5.303 4 C 0.288 3.712 5 O -0.416 6.416 6 C 0.277 3.723 7 O -0.405 6.405 8 N -0.339 5.339 9 C 0.071 3.929 10 C -0.228 4.228 11 C -0.104 4.104 12 C -0.205 4.205 13 C 0.083 3.917 14 C -0.527 4.527 15 H 0.095 0.905 16 C -0.182 4.182 17 N -0.456 5.456 18 Si 0.805 3.195 19 H -0.187 1.187 20 H -0.194 1.194 21 H -0.182 1.182 22 C -0.258 4.258 23 C -0.088 4.088 24 C 0.040 3.960 25 H 0.152 0.848 26 C -0.177 4.177 27 C -0.084 4.084 28 N -0.296 5.296 29 C -0.114 4.114 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.245 0.755 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.123 0.877 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.118 0.882 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.112 0.888 47 H 0.161 0.839 48 H 0.068 0.932 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.455 -9.244 20.109 22.180 hybrid contribution 0.318 1.817 -1.922 2.664 sum -1.137 -7.428 18.186 19.678 Atomic orbital electron populations 1.22047 0.95125 1.02961 1.01151 1.22116 0.95478 0.79600 1.04905 1.47954 1.62412 1.15357 1.04529 1.20246 0.79734 0.85667 0.85595 1.90711 1.43359 1.20420 1.87085 1.20250 0.81075 0.85567 0.85378 1.90689 1.41282 1.21389 1.87110 1.46310 1.57104 1.25145 1.05351 1.19977 0.99287 0.94596 0.79053 1.19238 0.97353 1.03583 1.02579 1.20796 0.98311 0.94973 0.96298 1.21293 0.97224 1.01593 1.00360 1.18035 0.90889 0.90975 0.91790 1.19892 1.26344 0.98114 1.08361 0.90533 1.26758 0.92284 0.98845 1.00340 1.69850 1.28657 1.15838 1.31206 0.85166 0.79920 0.77027 0.77397 1.18655 1.19407 1.18212 1.21238 0.99604 1.03050 1.01958 1.20727 0.95286 0.97731 0.95065 1.22270 0.93967 0.94956 0.84805 0.84834 1.22730 0.98952 0.95005 1.01049 1.22578 0.89721 0.95597 1.00524 1.63102 1.04493 1.13433 1.48584 1.23480 0.97011 0.95495 0.95370 0.94240 0.90309 0.92295 0.89183 0.87546 0.75503 0.90373 0.91200 0.87659 0.88167 0.90231 0.88227 0.86259 0.88800 0.93117 0.95067 0.88830 0.83949 0.93218 0.89100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.67 71.98 0.70 -1.92 16 2 C 0.10 1.65 5.69 86.38 0.49 2.14 16 3 N -0.57 -11.61 2.55 -792.72 -2.02 -13.63 16 4 C 0.50 13.67 6.81 87.27 0.59 14.26 16 5 O -0.54 -16.97 12.86 -3.23 -0.04 -17.01 16 6 C 0.50 14.42 7.65 87.27 0.67 15.09 16 7 O -0.53 -15.48 11.43 -3.25 -0.04 -15.51 16 8 N -0.69 -21.36 5.54 -468.14 -2.59 -23.96 16 9 C 0.19 6.17 5.79 85.63 0.50 6.67 16 10 C -0.23 -8.86 5.27 -19.68 -0.10 -8.97 16 11 C -0.08 -3.74 9.67 22.22 0.21 -3.53 16 12 C -0.19 -9.51 8.66 22.73 0.20 -9.31 16 13 C 0.09 4.52 5.54 -21.29 -0.12 4.40 16 14 C -0.50 -26.48 9.06 23.46 0.21 -26.27 16 15 H 0.08 3.93 7.87 -2.91 -0.02 3.90 16 16 C 0.03 1.60 5.24 85.26 0.45 2.05 16 17 N -0.83 -43.24 10.90 21.83 0.24 -43.00 16 18 Si 0.98 38.04 29.57 68.60 2.03 40.07 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 20 H -0.27 -9.97 7.11 99.48 0.71 -9.26 16 21 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 22 C -0.24 -11.29 9.80 22.73 0.22 -11.07 16 23 C -0.07 -2.83 9.67 22.22 0.21 -2.62 16 24 C 0.14 2.49 3.55 46.20 0.16 2.66 16 25 H 0.13 1.63 7.81 -2.39 -0.02 1.61 16 26 C -0.14 -2.57 6.20 31.47 0.20 -2.38 16 27 C 0.05 0.82 7.52 86.45 0.65 1.47 16 28 N -0.67 -12.05 7.51 -502.17 -3.77 -15.83 16 29 C 0.02 0.32 6.87 86.65 0.60 0.92 16 30 H 0.04 0.90 6.49 -2.39 -0.02 0.89 16 31 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.09 1.81 5.82 -2.38 -0.01 1.80 16 34 H 0.11 1.08 7.85 -2.39 -0.02 1.06 16 35 H 0.41 13.52 7.95 -92.71 -0.74 12.78 16 36 H 0.08 2.34 8.08 -2.39 -0.02 2.32 16 37 H 0.07 2.20 8.08 -2.39 -0.02 2.18 16 38 H 0.11 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.10 5.45 6.27 -2.91 -0.02 5.44 16 40 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 41 H 0.10 4.47 8.06 -2.91 -0.02 4.44 16 42 H 0.12 4.12 8.06 -2.91 -0.02 4.10 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.05 1.24 6.60 -2.38 -0.02 1.22 16 45 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 46 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.34 5.80 8.92 -89.70 -0.80 5.00 16 48 H 0.05 1.28 5.47 -2.39 -0.01 1.27 16 49 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -59.91 392.85 -0.91 -60.82 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: -0.55 Total: 44.44 kcal Atomic # 6 Polarization: -22.23 SS G_CDS: 5.84 Total: -16.39 kcal Atomic # 7 Polarization: -88.27 SS G_CDS: -8.15 Total: -96.42 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.08 Total: -32.52 kcal Atomic # 14 Polarization: 38.04 SS G_CDS: 2.03 Total: 40.07 kcal Total: -59.91 -0.91 -60.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884730236.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.764 kcal (2) G-P(sol) polarization free energy of solvation -59.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds