Wall clock time and date at job start Wed Apr 1 2020 03:07:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46814 * 2 1 4 4 C 1.34782 * 120.00198 * 274.00168 * 3 2 1 5 5 O 1.21355 * 119.99707 * 185.16702 * 4 3 2 6 6 C 1.49362 * 119.99867 * 5.16677 * 4 3 2 7 7 O 1.21356 * 120.00221 * 5.57005 * 6 4 3 8 8 N 1.34770 * 120.00058 * 185.57422 * 6 4 3 9 9 C 1.39120 * 120.00220 * 175.00202 * 8 6 4 10 10 C 1.39707 * 119.57700 * 185.51586 * 9 8 6 11 11 C 1.38657 * 119.48994 * 179.76324 * 10 9 8 12 12 C 1.38344 * 118.67049 * 0.50478 * 11 10 9 13 13 C 1.40600 * 119.13476 * 359.73799 * 12 11 10 14 14 C 1.41342 * 119.78129 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00361 * 359.97438 * 14 13 12 16 16 C 1.40034 * 119.99765 * 179.97438 * 14 13 12 17 17 N 1.30745 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46981 * 90.00121 * 18 16 14 20 20 H 1.48500 * 109.46946 * 210.00240 * 18 16 14 21 21 H 1.48500 * 109.47119 * 330.00062 * 18 16 14 22 22 N 1.31931 * 119.57426 * 5.78834 * 9 8 6 23 23 C 1.46503 * 120.00166 * 94.01034 * 3 2 1 24 24 C 1.52999 * 109.47053 * 239.99841 * 23 3 2 25 25 C 1.52995 * 109.47527 * 179.97438 * 24 23 3 26 26 C 1.53003 * 109.47041 * 59.99485 * 25 24 23 27 27 C 1.52999 * 109.47380 * 300.00604 * 26 25 24 28 28 C 1.52994 * 109.47508 * 119.99601 * 23 3 2 29 29 H 1.09004 * 109.47250 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47022 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.46884 * 240.00692 * 2 1 3 33 33 H 1.08997 * 109.47063 * 119.99916 * 2 1 3 34 34 H 0.97004 * 120.00116 * 354.99720 * 8 6 4 35 35 H 1.07997 * 120.25302 * 359.97438 * 10 9 8 36 36 H 1.07999 * 120.66332 * 180.24469 * 11 10 9 37 37 H 1.08002 * 120.43534 * 179.77394 * 12 11 10 38 38 H 0.96998 * 119.99609 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46736 * 359.97438 * 23 3 2 40 40 H 1.09001 * 109.47265 * 299.99519 * 24 23 3 41 41 H 1.09003 * 109.47302 * 59.99492 * 24 23 3 42 42 H 1.08995 * 109.47269 * 300.00286 * 25 24 23 43 43 H 1.08998 * 109.47490 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47603 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46872 * 60.00046 * 26 25 24 46 46 H 1.09001 * 109.46790 * 299.99905 * 27 26 25 47 47 H 1.09003 * 109.47302 * 179.97438 * 27 26 25 48 48 H 1.09006 * 109.46935 * 299.99864 * 28 23 3 49 49 H 1.09001 * 109.47486 * 60.00014 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.0438 -1.1644 5 8 2.6582 3.1531 -1.1730 6 6 1.7242 1.4128 -2.4440 7 8 1.1410 0.3487 -2.4261 8 7 1.9733 2.0250 -3.6185 9 6 1.6555 1.3902 -4.8150 10 6 2.0219 1.9804 -6.0271 11 6 1.7087 1.3437 -7.2184 12 6 1.0287 0.1400 -7.1689 13 6 0.6832 -0.4000 -5.9176 14 6 -0.0112 -1.6293 -5.8510 15 1 -0.2750 -2.1505 -6.7595 16 6 -0.3571 -2.1716 -4.6071 17 7 -0.0381 -1.5405 -3.5074 18 14 -1.2741 -3.7966 -4.5191 19 1 -0.2973 -4.9134 -4.4556 20 1 -2.1292 -3.8172 -3.3051 21 1 -2.1248 -3.9510 -5.7264 22 7 1.0074 0.2414 -4.7905 23 6 2.3461 2.0423 1.2656 24 6 1.4697 3.2851 1.4338 25 6 1.8115 3.9752 2.7558 26 6 3.2850 4.3872 2.7500 27 6 4.1614 3.1444 2.5818 28 6 3.8195 2.4544 1.2592 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3740 2.9083 -3.6296 35 1 2.5481 2.9235 -6.0361 36 1 1.9863 1.7810 -8.1661 37 1 0.7671 -0.3785 -8.0795 38 1 -0.2781 -1.9159 -2.6458 39 1 2.1642 1.3553 2.0921 40 1 1.6512 3.9723 0.6073 41 1 0.4199 2.9916 1.4383 42 1 1.6297 3.2880 3.5820 43 1 1.1874 4.8609 2.8753 44 1 3.5287 4.8785 3.6919 45 1 3.4668 5.0745 1.9236 46 1 3.9795 2.4571 3.4081 47 1 5.2111 3.4380 2.5772 48 1 4.4438 1.5689 1.1395 49 1 4.0011 3.1415 0.4328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890118957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:48 Heat of formation + Delta-G solvation = -14.670657 kcal Electronic energy + Delta-G solvation = -31775.377061 eV Core-core repulsion = 27703.205592 eV Total energy + Delta-G solvation = -4072.171469 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.71798 -39.07359 -37.81612 -37.01686 -35.73070 -34.06019 -33.02516 -31.04590 -30.82943 -30.37106 -29.30761 -28.79297 -25.78737 -24.75297 -23.03678 -22.63179 -22.57971 -21.48052 -20.57343 -20.02910 -18.89003 -17.77982 -16.90878 -16.61233 -16.04317 -15.39186 -15.14904 -14.84790 -14.68606 -14.48083 -14.32996 -14.08243 -14.02079 -13.75419 -13.63248 -13.14644 -12.92898 -12.79620 -12.60159 -12.28324 -12.18846 -12.05050 -11.99706 -11.79154 -11.48897 -11.23245 -11.12241 -11.00879 -10.87571 -10.76101 -10.69737 -10.56493 -10.49339 -10.30030 -10.11111 -9.96566 -9.70469 -9.07521 -8.71065 -8.55403 -8.02827 -7.30200 -7.04193 -6.22667 -4.45195 1.96701 2.75638 2.82670 3.08877 3.12660 3.15321 3.23092 3.89942 3.97205 4.01036 4.58420 4.66576 4.79979 4.86340 4.91684 5.10992 5.15489 5.25731 5.27387 5.39588 5.43684 5.49452 5.64833 5.67987 5.78116 5.87516 5.89992 5.96995 5.98600 6.06805 6.11040 6.12633 6.18288 6.27761 6.31490 6.35546 6.44908 6.58443 6.64782 6.78108 6.79633 6.82853 7.17825 7.34062 7.48215 7.53532 7.76437 7.88773 8.06272 8.20452 8.38430 8.64503 8.94947 9.03063 10.14467 10.40501 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003525 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.975864 B = 7942.369694 C = 9530.585100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.103 3.897 3 N -0.585 5.585 4 C 0.509 3.491 5 O -0.532 6.532 6 C 0.461 3.539 7 O -0.377 6.377 8 N -0.640 5.640 9 C 0.370 3.630 10 C -0.350 4.350 11 C -0.036 4.036 12 C -0.302 4.302 13 C 0.272 3.728 14 C -0.424 4.424 15 H 0.082 0.918 16 C 0.061 3.939 17 N -0.660 5.660 18 Si 0.896 3.104 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.264 1.264 22 N -0.473 5.473 23 C 0.153 3.847 24 C -0.136 4.136 25 C -0.113 4.113 26 C -0.121 4.121 27 C -0.113 4.113 28 C -0.140 4.140 29 H 0.074 0.926 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.110 0.890 33 H 0.064 0.936 34 H 0.410 0.590 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.271 0.729 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.060 0.940 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.012 5.795 13.579 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.019 4.019 3 N -0.318 5.318 4 C 0.293 3.707 5 O -0.409 6.409 6 C 0.238 3.762 7 O -0.240 6.240 8 N -0.288 5.288 9 C 0.131 3.869 10 C -0.375 4.375 11 C -0.060 4.060 12 C -0.325 4.325 13 C 0.147 3.853 14 C -0.454 4.454 15 H 0.100 0.900 16 C -0.168 4.168 17 N -0.279 5.279 18 Si 0.720 3.280 19 H -0.197 1.197 20 H -0.203 1.203 21 H -0.188 1.188 22 N -0.192 5.192 23 C 0.050 3.950 24 C -0.174 4.174 25 C -0.151 4.151 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.178 4.178 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.128 0.872 33 H 0.082 0.918 34 H 0.245 0.755 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.102 0.898 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.566 5.124 14.707 15.977 hybrid contribution 0.014 0.107 -0.721 0.729 sum 3.580 5.231 13.986 15.355 Atomic orbital electron populations 1.22064 0.95152 1.02378 1.01755 1.22000 0.95573 0.80593 1.03747 1.48011 1.63842 1.14871 1.05096 1.20771 0.78823 0.85620 0.85515 1.90616 1.43253 1.20000 1.87062 1.20195 0.83987 0.87514 0.84487 1.91147 1.31230 1.16996 1.84659 1.43030 1.61406 1.20602 1.03771 1.18549 0.93474 0.91916 0.82913 1.20518 1.20154 1.04824 0.92049 1.20579 0.95360 0.94374 0.95713 1.21650 1.12633 0.99964 0.98222 1.18358 0.89291 0.92057 0.85618 1.19570 1.29787 1.02678 0.93379 0.89972 1.26131 0.96159 0.98470 0.96018 1.70314 1.27231 1.32634 0.97712 0.86521 0.80012 0.82712 0.78743 1.19667 1.20303 1.18807 1.68647 1.15809 1.05736 1.29058 1.21122 0.94884 0.94175 0.84772 1.21950 0.99002 0.97613 0.98880 1.21461 0.96410 1.00088 0.97113 1.21555 0.94916 0.97771 1.01575 1.21476 0.99418 0.97037 0.97170 1.22028 0.95050 1.01456 0.99234 0.90682 0.91804 0.94292 0.87230 0.91786 0.75458 0.88828 0.88455 0.88462 0.91738 0.89759 0.89812 0.92004 0.92217 0.91895 0.92269 0.91644 0.92296 0.91911 0.92170 0.89080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 9.67 37.16 0.36 -1.91 16 2 C 0.10 1.46 5.67 -4.04 -0.02 1.44 16 3 N -0.59 -8.47 2.43 -166.65 -0.40 -8.87 16 4 C 0.51 8.72 7.11 -11.62 -0.08 8.64 16 5 O -0.53 -9.34 12.73 5.49 0.07 -9.27 16 6 C 0.46 9.30 7.61 -11.63 -0.09 9.21 16 7 O -0.38 -8.36 7.19 5.49 0.04 -8.32 16 8 N -0.64 -13.14 5.37 -11.83 -0.06 -13.20 16 9 C 0.37 8.89 7.42 -155.09 -1.15 7.73 16 10 C -0.35 -7.83 9.96 -38.88 -0.39 -8.22 16 11 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 12 C -0.30 -7.40 9.83 -38.65 -0.38 -7.78 16 13 C 0.27 7.36 6.55 -84.99 -0.56 6.81 16 14 C -0.42 -11.16 9.14 -37.73 -0.34 -11.50 16 15 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 16 C 0.06 1.51 5.50 -17.34 -0.10 1.42 16 17 N -0.66 -16.70 8.99 55.55 0.50 -16.20 16 18 Si 0.90 18.31 29.56 -169.99 -5.02 13.29 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.28 -5.58 7.11 56.52 0.40 -5.17 16 21 H -0.26 -5.38 7.11 56.52 0.40 -4.97 16 22 N -0.47 -12.71 5.73 -10.27 -0.06 -12.76 16 23 C 0.15 1.84 2.54 -67.93 -0.17 1.66 16 24 C -0.14 -1.61 5.13 -26.73 -0.14 -1.74 16 25 C -0.11 -1.05 5.92 -26.73 -0.16 -1.21 16 26 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 27 C -0.11 -1.04 5.92 -26.71 -0.16 -1.20 16 28 C -0.14 -1.63 5.13 -26.71 -0.14 -1.77 16 29 H 0.07 1.35 6.48 -51.93 -0.34 1.02 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.04 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.11 1.88 5.83 -51.93 -0.30 1.57 16 33 H 0.06 0.74 7.84 -51.93 -0.41 0.33 16 34 H 0.41 7.32 8.18 -40.82 -0.33 6.98 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 36 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.27 6.31 8.29 -40.82 -0.34 5.97 16 39 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 40 H 0.08 1.19 6.35 -51.93 -0.33 0.86 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 49 H 0.09 1.29 6.00 -51.93 -0.31 0.97 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -28.76 382.65 -10.71 -39.47 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -7.47 Total: 10.99 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -4.07 Total: -0.88 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: -0.03 Total: -51.05 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: 0.11 Total: -17.59 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -28.76 -10.71 -39.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890118957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.800 kcal (2) G-P(sol) polarization free energy of solvation -28.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds