Wall clock time and date at job start Wed Apr 1 2020 03:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46814 * 2 1 4 4 C 1.34782 * 120.00198 * 274.00168 * 3 2 1 5 5 O 1.21355 * 119.99707 * 185.16702 * 4 3 2 6 6 C 1.49362 * 119.99867 * 5.16677 * 4 3 2 7 7 O 1.21356 * 120.00221 * 5.57005 * 6 4 3 8 8 N 1.34770 * 120.00058 * 185.57422 * 6 4 3 9 9 C 1.39120 * 120.00220 * 175.00202 * 8 6 4 10 10 C 1.39707 * 119.57700 * 185.51586 * 9 8 6 11 11 C 1.38657 * 119.48994 * 179.76324 * 10 9 8 12 12 C 1.38344 * 118.67049 * 0.50478 * 11 10 9 13 13 C 1.40600 * 119.13476 * 359.73799 * 12 11 10 14 14 C 1.41342 * 119.78129 * 180.02562 * 13 12 11 15 15 H 1.08001 * 120.00361 * 359.97438 * 14 13 12 16 16 C 1.40034 * 119.99765 * 179.97438 * 14 13 12 17 17 N 1.30745 * 119.99830 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46981 * 90.00121 * 18 16 14 20 20 H 1.48500 * 109.46946 * 210.00240 * 18 16 14 21 21 H 1.48500 * 109.47119 * 330.00062 * 18 16 14 22 22 N 1.31931 * 119.57426 * 5.78834 * 9 8 6 23 23 C 1.46503 * 120.00166 * 94.01034 * 3 2 1 24 24 C 1.52999 * 109.47053 * 239.99841 * 23 3 2 25 25 C 1.52995 * 109.47527 * 179.97438 * 24 23 3 26 26 C 1.53003 * 109.47041 * 59.99485 * 25 24 23 27 27 C 1.52999 * 109.47380 * 300.00604 * 26 25 24 28 28 C 1.52994 * 109.47508 * 119.99601 * 23 3 2 29 29 H 1.09004 * 109.47250 * 59.99416 * 1 2 3 30 30 H 1.09000 * 109.47387 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47022 * 299.99887 * 1 2 3 32 32 H 1.08997 * 109.46884 * 240.00692 * 2 1 3 33 33 H 1.08997 * 109.47063 * 119.99916 * 2 1 3 34 34 H 0.97004 * 120.00116 * 354.99720 * 8 6 4 35 35 H 1.07997 * 120.25302 * 359.97438 * 10 9 8 36 36 H 1.07999 * 120.66332 * 180.24469 * 11 10 9 37 37 H 1.08002 * 120.43534 * 179.77394 * 12 11 10 38 38 H 0.96998 * 119.99609 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46736 * 359.97438 * 23 3 2 40 40 H 1.09001 * 109.47265 * 299.99519 * 24 23 3 41 41 H 1.09003 * 109.47302 * 59.99492 * 24 23 3 42 42 H 1.08995 * 109.47269 * 300.00286 * 25 24 23 43 43 H 1.08998 * 109.47490 * 179.97438 * 25 24 23 44 44 H 1.08998 * 109.47603 * 180.02562 * 26 25 24 45 45 H 1.09009 * 109.46872 * 60.00046 * 26 25 24 46 46 H 1.09001 * 109.46790 * 299.99905 * 27 26 25 47 47 H 1.09003 * 109.47302 * 179.97438 * 27 26 25 48 48 H 1.09006 * 109.46935 * 299.99864 * 28 23 3 49 49 H 1.09001 * 109.47486 * 60.00014 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1661 2.0438 -1.1644 5 8 2.6582 3.1531 -1.1730 6 6 1.7242 1.4128 -2.4440 7 8 1.1410 0.3487 -2.4261 8 7 1.9733 2.0250 -3.6185 9 6 1.6555 1.3902 -4.8150 10 6 2.0219 1.9804 -6.0271 11 6 1.7087 1.3437 -7.2184 12 6 1.0287 0.1400 -7.1689 13 6 0.6832 -0.4000 -5.9176 14 6 -0.0112 -1.6293 -5.8510 15 1 -0.2750 -2.1505 -6.7595 16 6 -0.3571 -2.1716 -4.6071 17 7 -0.0381 -1.5405 -3.5074 18 14 -1.2741 -3.7966 -4.5191 19 1 -0.2973 -4.9134 -4.4556 20 1 -2.1292 -3.8172 -3.3051 21 1 -2.1248 -3.9510 -5.7264 22 7 1.0074 0.2414 -4.7905 23 6 2.3461 2.0423 1.2656 24 6 1.4697 3.2851 1.4338 25 6 1.8115 3.9752 2.7558 26 6 3.2850 4.3872 2.7500 27 6 4.1614 3.1444 2.5818 28 6 3.8195 2.4544 1.2592 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3740 2.9083 -3.6296 35 1 2.5481 2.9235 -6.0361 36 1 1.9863 1.7810 -8.1661 37 1 0.7671 -0.3785 -8.0795 38 1 -0.2781 -1.9159 -2.6458 39 1 2.1642 1.3553 2.0921 40 1 1.6512 3.9723 0.6073 41 1 0.4199 2.9916 1.4383 42 1 1.6297 3.2880 3.5820 43 1 1.1874 4.8609 2.8753 44 1 3.5287 4.8785 3.6919 45 1 3.4668 5.0745 1.9236 46 1 3.9795 2.4571 3.4081 47 1 5.2111 3.4380 2.5772 48 1 4.4438 1.5689 1.1395 49 1 4.0011 3.1415 0.4328 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890118957.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:46 Heat of formation + Delta-G solvation = -28.797352 kcal Electronic energy + Delta-G solvation = -31775.989641 eV Core-core repulsion = 27703.205592 eV Total energy + Delta-G solvation = -4072.784048 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.06309 -40.60596 -39.28052 -38.37522 -36.99809 -35.74460 -34.78986 -32.26592 -32.05188 -31.66430 -31.06608 -29.98433 -27.60795 -26.19652 -24.30307 -23.87566 -23.46909 -23.23654 -22.12139 -20.94977 -20.40115 -19.44003 -18.36805 -18.14461 -17.46892 -16.76804 -16.48786 -16.41197 -16.27673 -15.79592 -15.50434 -15.36165 -15.31490 -15.10028 -14.86623 -14.69183 -14.38287 -14.03002 -13.85709 -13.75264 -13.51659 -13.20916 -13.09659 -12.96566 -12.87503 -12.73122 -12.56384 -12.52264 -12.32660 -12.06488 -11.96963 -11.85725 -11.74187 -11.45679 -11.44316 -11.15445 -11.08993 -10.85067 -10.23687 -9.90790 -9.74294 -9.11619 -8.87097 -8.05674 -6.39608 0.44755 1.05821 1.29057 1.42566 1.44436 1.54329 1.57082 2.29476 2.41903 2.50487 3.00936 3.38823 3.77834 3.82255 3.96245 4.03856 4.16747 4.25854 4.30850 4.34014 4.37268 4.48007 4.59284 4.62953 4.63405 4.64655 4.69584 4.80897 4.83078 4.93001 4.95105 4.99428 5.10543 5.12312 5.12819 5.23642 5.28975 5.31282 5.32895 5.40182 5.45448 5.51370 5.65618 5.70669 5.76856 5.91646 6.05539 6.16795 6.30114 6.54228 6.74850 6.89527 7.06936 7.36336 8.27276 8.58382 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014124 B = 0.003525 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.975864 B = 7942.369694 C = 9530.585100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.106 3.894 3 N -0.574 5.574 4 C 0.514 3.486 5 O -0.539 6.539 6 C 0.448 3.552 7 O -0.396 6.396 8 N -0.637 5.637 9 C 0.351 3.649 10 C -0.348 4.348 11 C -0.033 4.033 12 C -0.325 4.325 13 C 0.238 3.762 14 C -0.459 4.459 15 H 0.084 0.916 16 C 0.017 3.983 17 N -0.684 5.684 18 Si 0.971 3.029 19 H -0.267 1.267 20 H -0.270 1.270 21 H -0.262 1.262 22 N -0.501 5.501 23 C 0.149 3.851 24 C -0.133 4.133 25 C -0.107 4.107 26 C -0.120 4.120 27 C -0.108 4.108 28 C -0.137 4.137 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.102 0.898 34 H 0.421 0.579 35 H 0.125 0.875 36 H 0.136 0.864 37 H 0.106 0.894 38 H 0.275 0.725 39 H 0.113 0.887 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.079 0.921 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.047 0.953 46 H 0.078 0.922 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.384 5.862 15.871 17.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 N -0.307 5.307 4 C 0.296 3.704 5 O -0.418 6.418 6 C 0.227 3.773 7 O -0.260 6.260 8 N -0.287 5.287 9 C 0.113 3.887 10 C -0.373 4.373 11 C -0.057 4.057 12 C -0.348 4.348 13 C 0.113 3.887 14 C -0.490 4.490 15 H 0.102 0.898 16 C -0.209 4.209 17 N -0.303 5.303 18 Si 0.793 3.207 19 H -0.192 1.192 20 H -0.194 1.194 21 H -0.187 1.187 22 N -0.221 5.221 23 C 0.047 3.953 24 C -0.171 4.171 25 C -0.145 4.145 26 C -0.158 4.158 27 C -0.146 4.146 28 C -0.175 4.175 29 H 0.054 0.946 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.258 0.742 35 H 0.143 0.857 36 H 0.154 0.846 37 H 0.124 0.876 38 H 0.086 0.914 39 H 0.131 0.869 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.098 0.902 45 H 0.066 0.934 46 H 0.097 0.903 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.957 5.225 17.022 18.240 hybrid contribution -0.042 0.193 -1.438 1.451 sum 3.915 5.418 15.584 16.957 Atomic orbital electron populations 1.21931 0.95337 1.02280 1.00751 1.21945 0.95277 0.80357 1.03997 1.48084 1.62560 1.14855 1.05161 1.20191 0.79364 0.85549 0.85281 1.90623 1.43908 1.20144 1.87078 1.20851 0.83581 0.87473 0.85418 1.91155 1.31759 1.17860 1.85239 1.43043 1.61407 1.20982 1.03259 1.18981 0.93272 0.91744 0.84699 1.20931 1.19202 1.05678 0.91509 1.21010 0.93881 0.93419 0.97423 1.21834 1.13867 1.01291 0.97804 1.18838 0.90148 0.92938 0.86794 1.19872 1.31328 1.03422 0.94364 0.89805 1.26894 0.96870 1.01909 0.95255 1.70442 1.27658 1.34064 0.98093 0.85374 0.78569 0.77973 0.78789 1.19217 1.19442 1.18650 1.68613 1.16996 1.07036 1.29496 1.21431 0.95205 0.94737 0.83878 1.21899 0.98714 0.97063 0.99463 1.21450 0.96628 1.00494 0.95958 1.21557 0.94727 0.97530 1.01941 1.21464 0.99828 0.97184 0.96075 1.21971 0.94715 1.00952 0.99845 0.94644 0.91494 0.92089 0.90411 0.88006 0.74192 0.85707 0.84607 0.87587 0.91397 0.86869 0.92750 0.92376 0.90240 0.91352 0.90214 0.93401 0.90314 0.91291 0.92270 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.18 9.67 71.98 0.70 -3.49 16 2 C 0.11 2.93 5.67 86.38 0.49 3.42 16 3 N -0.57 -16.30 2.43 -799.51 -1.94 -18.24 16 4 C 0.51 17.95 7.11 87.24 0.62 18.57 16 5 O -0.54 -19.31 12.73 -3.26 -0.04 -19.35 16 6 C 0.45 18.80 7.61 87.24 0.66 19.46 16 7 O -0.40 -18.39 7.19 -3.26 -0.02 -18.42 16 8 N -0.64 -26.92 5.37 -309.72 -1.66 -28.59 16 9 C 0.35 17.28 7.42 133.30 0.99 18.27 16 10 C -0.35 -15.38 9.96 22.73 0.23 -15.15 16 11 C -0.03 -1.46 10.15 22.40 0.23 -1.24 16 12 C -0.33 -16.25 9.83 22.87 0.22 -16.02 16 13 C 0.24 13.39 6.55 40.20 0.26 13.65 16 14 C -0.46 -25.14 9.14 23.47 0.21 -24.92 16 15 H 0.08 4.34 7.85 -2.91 -0.02 4.32 16 16 C 0.02 0.87 5.50 85.29 0.47 1.34 16 17 N -0.68 -35.87 8.99 21.84 0.20 -35.67 16 18 Si 0.97 38.39 29.56 68.60 2.03 40.42 16 19 H -0.27 -10.28 7.11 99.48 0.71 -9.57 16 20 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 22 N -0.50 -27.96 5.73 -186.42 -1.07 -29.03 16 23 C 0.15 3.28 2.54 44.99 0.11 3.39 16 24 C -0.13 -2.95 5.13 30.59 0.16 -2.80 16 25 C -0.11 -1.71 5.92 30.59 0.18 -1.53 16 26 C -0.12 -1.88 5.92 30.59 0.18 -1.69 16 27 C -0.11 -1.68 5.92 30.61 0.18 -1.50 16 28 C -0.14 -2.98 5.13 30.61 0.16 -2.82 16 29 H 0.03 1.31 6.48 -2.38 -0.02 1.29 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.08 2.73 5.83 -2.39 -0.01 2.72 16 33 H 0.10 2.07 7.84 -2.39 -0.02 2.05 16 34 H 0.42 15.28 8.18 -92.71 -0.76 14.52 16 35 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 36 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 37 H 0.11 4.92 8.06 -2.91 -0.02 4.90 16 38 H 0.27 13.24 8.29 -92.71 -0.77 12.47 16 39 H 0.11 1.91 7.74 -2.39 -0.02 1.89 16 40 H 0.05 1.54 6.35 -2.39 -0.02 1.53 16 41 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 48 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 49 H 0.06 1.74 6.00 -2.39 -0.01 1.73 16 Total: -1.00 -65.79 382.65 3.75 -62.04 By element: Atomic # 1 Polarization: 39.70 SS G_CDS: 0.21 Total: 39.91 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.06 Total: 6.94 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -4.48 Total: -111.54 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: -0.06 Total: -37.77 kcal Atomic # 14 Polarization: 38.39 SS G_CDS: 2.03 Total: 40.42 kcal Total: -65.79 3.75 -62.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890118957.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.240 kcal (2) G-P(sol) polarization free energy of solvation -65.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds