Wall clock time and date at job start Wed Apr 1 2020 03:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47085 * 2 1 4 4 C 1.34767 * 120.00409 * 274.37305 * 3 2 1 5 5 O 1.21360 * 119.99974 * 2.25441 * 4 3 2 6 6 C 1.49371 * 120.00024 * 182.25496 * 4 3 2 7 7 O 1.21352 * 119.99897 * 353.78134 * 6 4 3 8 8 N 1.34778 * 119.99956 * 173.77960 * 6 4 3 9 9 C 1.39112 * 120.00295 * 183.77141 * 8 6 4 10 10 C 1.39710 * 119.57362 * 338.09103 * 9 8 6 11 11 C 1.38653 * 119.49213 * 179.77010 * 10 9 8 12 12 C 1.38339 * 118.67316 * 0.49782 * 11 10 9 13 13 C 1.40603 * 119.13334 * 359.74763 * 12 11 10 14 14 C 1.41340 * 119.78550 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99951 * 5.17901 * 14 13 12 16 16 C 1.40021 * 119.99874 * 185.17655 * 14 13 12 17 17 N 1.30738 * 120.00248 * 5.19741 * 16 14 13 18 18 Si 1.86798 * 119.99972 * 185.19793 * 16 14 13 19 19 H 1.48501 * 109.47329 * 94.99920 * 18 16 14 20 20 H 1.48501 * 109.47438 * 214.99885 * 18 16 14 21 21 H 1.48501 * 109.47113 * 334.99976 * 18 16 14 22 22 N 1.31929 * 119.58515 * 158.36336 * 9 8 6 23 23 C 1.46510 * 119.99476 * 94.37317 * 3 2 1 24 24 C 1.53773 * 113.61350 * 16.49712 * 23 3 2 25 25 C 1.53956 * 87.01965 * 89.23200 * 24 23 3 26 26 C 1.52999 * 113.53387 * 270.80806 * 25 24 23 27 27 C 1.53000 * 113.74195 * 139.94198 * 25 24 23 28 28 C 1.53774 * 113.61193 * 114.10631 * 23 3 2 29 29 H 1.08999 * 109.47668 * 59.99258 * 1 2 3 30 30 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47134 * 299.99490 * 1 2 3 32 32 H 1.09005 * 109.46668 * 240.00584 * 2 1 3 33 33 H 1.08995 * 109.47190 * 120.00646 * 2 1 3 34 34 H 0.97005 * 120.00026 * 3.76680 * 8 6 4 35 35 H 1.08010 * 120.25340 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.66239 * 180.24270 * 11 10 9 37 37 H 1.07995 * 120.43626 * 179.76726 * 12 11 10 38 38 H 0.97005 * 120.00056 * 180.02562 * 17 16 14 39 39 H 1.08998 * 112.84385 * 245.30003 * 23 3 2 40 40 H 1.09002 * 113.61294 * 203.75148 * 24 23 3 41 41 H 1.09004 * 113.61611 * 334.65004 * 24 23 3 42 42 H 1.09002 * 109.46850 * 164.74833 * 26 25 24 43 43 H 1.09000 * 109.47517 * 284.75243 * 26 25 24 44 44 H 1.08999 * 109.47255 * 44.75260 * 26 25 24 45 45 H 1.08994 * 109.47335 * 322.40092 * 27 25 24 46 46 H 1.09003 * 109.47378 * 82.40426 * 27 25 24 47 47 H 1.09002 * 109.47050 * 202.40055 * 27 25 24 48 48 H 1.09004 * 113.61889 * 25.34868 * 28 23 3 49 49 H 1.09004 * 113.60960 * 156.24900 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1591 2.0463 -1.1637 5 8 1.8427 1.5153 -2.2081 6 6 2.7045 3.4368 -1.1679 7 8 2.9148 4.0093 -0.1188 8 7 2.9630 4.0557 -2.3370 9 6 3.5440 5.3197 -2.3414 10 6 3.4421 6.1293 -1.2073 11 6 4.0259 7.3869 -1.2118 12 6 4.6870 7.8078 -2.3518 13 6 4.7504 6.9486 -3.4629 14 6 5.4229 7.3643 -4.6345 15 1 5.9570 8.3030 -4.6463 16 6 5.3967 6.5592 -5.7798 17 7 4.6679 5.4740 -5.7995 18 14 6.4030 7.0357 -7.2796 19 1 7.7087 6.3291 -7.2446 20 1 5.6667 6.6542 -8.5115 21 1 6.6338 8.5027 -7.2752 22 7 4.1793 5.7408 -3.4182 23 6 2.3537 2.0395 1.2652 24 6 2.5294 1.0630 2.4400 25 6 4.0121 0.9701 2.0363 26 6 4.2986 -0.1296 1.0119 27 6 4.9737 0.9391 3.2260 28 6 3.8492 2.3660 1.4121 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7441 3.6197 -3.1754 35 1 2.9156 5.7769 -0.3326 36 1 3.9621 8.0268 -0.3441 37 1 5.1487 8.7834 -2.3877 38 1 4.6500 4.9161 -6.5928 39 1 1.6987 2.8810 1.4910 40 1 2.3705 1.5213 3.4162 41 1 1.9827 0.1281 2.3162 42 1 5.2837 0.0301 0.5734 43 1 4.2737 -1.1012 1.5053 44 1 3.5427 -0.1011 0.2272 45 1 4.6062 1.6039 4.0076 46 1 5.0386 -0.0773 3.6144 47 1 5.9614 1.2685 2.9035 48 1 4.3666 2.4816 0.4597 49 1 4.0518 3.1813 2.1068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890331721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:05 Heat of formation + Delta-G solvation = 22.300933 kcal Electronic energy + Delta-G solvation = -31440.140253 eV Core-core repulsion = 27369.571992 eV Total energy + Delta-G solvation = -4070.568260 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.46889 -39.71538 -38.55422 -37.58369 -35.22912 -34.30514 -33.27526 -31.58234 -30.46971 -29.77318 -29.32111 -27.64240 -26.21541 -25.73327 -24.81381 -23.14644 -22.42252 -21.66526 -20.76842 -19.64112 -18.41421 -17.58020 -17.36331 -16.74240 -16.38241 -16.12004 -15.53820 -15.13671 -14.92920 -14.58424 -14.42288 -14.18566 -14.07273 -13.82556 -13.63564 -13.42178 -13.01881 -12.93168 -12.78934 -12.62701 -12.25654 -12.09898 -12.06866 -11.93825 -11.77350 -11.46332 -11.27399 -11.18976 -11.11465 -11.04075 -10.77453 -10.69931 -10.57248 -10.38295 -10.13706 -10.10418 -9.77537 -9.23859 -8.80200 -8.74022 -8.10318 -7.74153 -7.21670 -6.46291 -4.54031 1.55009 2.41670 2.73035 2.94441 3.08899 3.11936 3.20864 3.53888 3.62705 3.93824 4.30166 4.35915 4.58173 4.67724 4.73738 4.76935 4.85585 4.98077 5.17284 5.20711 5.36529 5.46953 5.52723 5.54667 5.64971 5.70593 5.72261 5.77447 5.84165 5.85998 5.95153 6.02768 6.04167 6.09476 6.19815 6.21838 6.32138 6.34572 6.44567 6.66524 6.69641 6.75167 7.06083 7.11632 7.35543 7.40931 7.64888 7.80571 7.92740 8.04214 8.23336 8.45464 8.66211 8.90168 9.97852 10.28283 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002971 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.086893 B = 9422.000921 C = 9995.338667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.100 3.900 3 N -0.570 5.570 4 C 0.513 3.487 5 O -0.517 6.517 6 C 0.501 3.499 7 O -0.491 6.491 8 N -0.613 5.613 9 C 0.352 3.648 10 C -0.311 4.311 11 C -0.050 4.050 12 C -0.283 4.283 13 C 0.279 3.721 14 C -0.434 4.434 15 H 0.086 0.914 16 C 0.072 3.928 17 N -0.720 5.720 18 Si 0.908 3.092 19 H -0.270 1.270 20 H -0.276 1.276 21 H -0.261 1.261 22 N -0.504 5.504 23 C 0.125 3.875 24 C -0.143 4.143 25 C -0.097 4.097 26 C -0.147 4.147 27 C -0.133 4.133 28 C -0.110 4.110 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.418 0.582 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.273 0.727 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.072 0.928 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.070 0.930 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.518 -12.010 13.636 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.022 4.022 3 N -0.304 5.304 4 C 0.295 3.705 5 O -0.392 6.392 6 C 0.281 3.719 7 O -0.365 6.365 8 N -0.259 5.259 9 C 0.117 3.883 10 C -0.336 4.336 11 C -0.075 4.075 12 C -0.306 4.306 13 C 0.153 3.847 14 C -0.466 4.466 15 H 0.104 0.896 16 C -0.154 4.154 17 N -0.342 5.342 18 Si 0.732 3.268 19 H -0.195 1.195 20 H -0.201 1.201 21 H -0.185 1.185 22 N -0.223 5.223 23 C 0.022 3.978 24 C -0.180 4.180 25 C -0.097 4.097 26 C -0.204 4.204 27 C -0.190 4.190 28 C -0.148 4.148 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.255 0.745 35 H 0.153 0.847 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.088 0.912 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.555 -12.634 12.943 18.652 hybrid contribution 0.336 0.537 -0.425 0.763 sum -4.219 -12.098 12.518 17.912 Atomic orbital electron populations 1.22151 0.95544 1.02250 1.02758 1.21761 0.94663 0.81968 1.03760 1.47566 1.63385 1.13696 1.05775 1.20198 0.79376 0.87082 0.83795 1.90764 1.48830 1.68677 1.30976 1.19807 0.80546 0.86965 0.84547 1.90660 1.50007 1.64930 1.30942 1.42875 1.56838 1.17055 1.09130 1.18427 0.93626 0.83739 0.92469 1.21716 1.14275 0.96674 1.00910 1.20818 0.95523 0.94754 0.96387 1.21759 1.11105 1.01483 0.96277 1.18172 0.88922 0.85764 0.91871 1.19585 1.27653 1.05098 0.94284 0.89561 1.26037 0.94840 0.94332 1.00155 1.70067 1.27463 1.09177 1.27493 0.86311 0.80143 0.80097 0.80249 1.19494 1.20144 1.18513 1.67981 1.13657 1.17148 1.23469 1.22080 0.98183 0.95085 0.82445 1.23555 0.96622 0.99756 0.98064 1.22002 0.94594 0.96912 0.96215 1.21969 1.02682 0.96936 0.98785 1.21692 0.99171 1.01258 0.96901 1.23293 0.94661 0.95295 1.01545 0.91903 0.91516 0.92352 0.89761 0.88756 0.74494 0.84665 0.88219 0.88125 0.91565 0.88705 0.88684 0.90513 0.92481 0.92693 0.90961 0.92529 0.93001 0.92542 0.91153 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.21 37.16 0.38 -1.16 16 2 C 0.10 0.99 3.69 -4.04 -0.01 0.98 16 3 N -0.57 -7.15 1.74 -165.72 -0.29 -7.44 16 4 C 0.51 8.30 7.51 -11.63 -0.09 8.21 16 5 O -0.52 -9.31 16.16 5.49 0.09 -9.22 16 6 C 0.50 9.27 6.96 -11.62 -0.08 9.19 16 7 O -0.49 -9.09 8.47 5.50 0.05 -9.05 16 8 N -0.61 -13.00 5.40 -11.83 -0.06 -13.07 16 9 C 0.35 8.66 7.49 -155.10 -1.16 7.49 16 10 C -0.31 -7.28 8.88 -38.88 -0.35 -7.62 16 11 C -0.05 -1.15 10.15 -39.39 -0.40 -1.55 16 12 C -0.28 -6.97 9.83 -38.65 -0.38 -7.35 16 13 C 0.28 7.61 6.54 -85.00 -0.56 7.06 16 14 C -0.43 -11.52 9.13 -37.73 -0.34 -11.87 16 15 H 0.09 2.13 7.85 -52.48 -0.41 1.72 16 16 C 0.07 1.81 5.48 -17.35 -0.10 1.71 16 17 N -0.72 -18.96 11.51 55.55 0.64 -18.32 16 18 Si 0.91 18.53 29.56 -169.99 -5.03 13.50 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.07 16 20 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 21 H -0.26 -5.22 7.11 56.52 0.40 -4.81 16 22 N -0.50 -13.77 7.95 -10.28 -0.08 -13.86 16 23 C 0.13 1.45 3.30 -67.12 -0.22 1.22 16 24 C -0.14 -1.22 6.67 -25.83 -0.17 -1.39 16 25 C -0.10 -0.95 1.39 -153.61 -0.21 -1.17 16 26 C -0.15 -1.46 8.31 37.16 0.31 -1.15 16 27 C -0.13 -1.16 9.20 37.16 0.34 -0.81 16 28 C -0.11 -1.38 4.89 -25.92 -0.13 -1.51 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 32 H 0.08 0.92 7.44 -51.93 -0.39 0.53 16 33 H 0.09 0.74 4.20 -51.93 -0.22 0.52 16 34 H 0.42 8.75 8.30 -40.82 -0.34 8.41 16 35 H 0.14 3.01 5.23 -52.69 -0.28 2.73 16 36 H 0.10 1.95 8.06 -52.49 -0.42 1.52 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.27 6.55 8.29 -40.82 -0.34 6.21 16 39 H 0.10 1.17 7.59 -51.93 -0.39 0.78 16 40 H 0.09 0.70 7.98 -51.93 -0.41 0.29 16 41 H 0.08 0.57 5.60 -51.93 -0.29 0.28 16 42 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.07 0.77 3.57 -51.93 -0.19 0.59 16 45 H 0.06 0.45 7.96 -51.93 -0.41 0.04 16 46 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.07 1.10 6.54 -51.93 -0.34 0.76 16 49 H 0.09 1.19 8.10 -51.93 -0.42 0.76 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -29.58 383.49 -9.10 -38.68 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -7.03 Total: 12.70 kcal Atomic # 6 Polarization: 3.45 SS G_CDS: -3.17 Total: 0.28 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: 0.21 Total: -52.68 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: 0.14 Total: -18.27 kcal Atomic # 14 Polarization: 18.53 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.58 -9.10 -38.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890331721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.980 kcal (2) G-P(sol) polarization free energy of solvation -29.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds