Wall clock time and date at job start Wed Apr 1 2020 03:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.47085 * 2 1 4 4 C 1.34767 * 120.00409 * 274.37305 * 3 2 1 5 5 O 1.21360 * 119.99974 * 2.25441 * 4 3 2 6 6 C 1.49371 * 120.00024 * 182.25496 * 4 3 2 7 7 O 1.21352 * 119.99897 * 353.78134 * 6 4 3 8 8 N 1.34778 * 119.99956 * 173.77960 * 6 4 3 9 9 C 1.39112 * 120.00295 * 183.77141 * 8 6 4 10 10 C 1.39710 * 119.57362 * 338.09103 * 9 8 6 11 11 C 1.38653 * 119.49213 * 179.77010 * 10 9 8 12 12 C 1.38339 * 118.67316 * 0.49782 * 11 10 9 13 13 C 1.40603 * 119.13334 * 359.74763 * 12 11 10 14 14 C 1.41340 * 119.78550 * 180.02562 * 13 12 11 15 15 H 1.08004 * 119.99951 * 5.17901 * 14 13 12 16 16 C 1.40021 * 119.99874 * 185.17655 * 14 13 12 17 17 N 1.30738 * 120.00248 * 5.19741 * 16 14 13 18 18 Si 1.86798 * 119.99972 * 185.19793 * 16 14 13 19 19 H 1.48501 * 109.47329 * 94.99920 * 18 16 14 20 20 H 1.48501 * 109.47438 * 214.99885 * 18 16 14 21 21 H 1.48501 * 109.47113 * 334.99976 * 18 16 14 22 22 N 1.31929 * 119.58515 * 158.36336 * 9 8 6 23 23 C 1.46510 * 119.99476 * 94.37317 * 3 2 1 24 24 C 1.53773 * 113.61350 * 16.49712 * 23 3 2 25 25 C 1.53956 * 87.01965 * 89.23200 * 24 23 3 26 26 C 1.52999 * 113.53387 * 270.80806 * 25 24 23 27 27 C 1.53000 * 113.74195 * 139.94198 * 25 24 23 28 28 C 1.53774 * 113.61193 * 114.10631 * 23 3 2 29 29 H 1.08999 * 109.47668 * 59.99258 * 1 2 3 30 30 H 1.08994 * 109.47147 * 179.97438 * 1 2 3 31 31 H 1.09009 * 109.47134 * 299.99490 * 1 2 3 32 32 H 1.09005 * 109.46668 * 240.00584 * 2 1 3 33 33 H 1.08995 * 109.47190 * 120.00646 * 2 1 3 34 34 H 0.97005 * 120.00026 * 3.76680 * 8 6 4 35 35 H 1.08010 * 120.25340 * 359.97438 * 10 9 8 36 36 H 1.07998 * 120.66239 * 180.24270 * 11 10 9 37 37 H 1.07995 * 120.43626 * 179.76726 * 12 11 10 38 38 H 0.97005 * 120.00056 * 180.02562 * 17 16 14 39 39 H 1.08998 * 112.84385 * 245.30003 * 23 3 2 40 40 H 1.09002 * 113.61294 * 203.75148 * 24 23 3 41 41 H 1.09004 * 113.61611 * 334.65004 * 24 23 3 42 42 H 1.09002 * 109.46850 * 164.74833 * 26 25 24 43 43 H 1.09000 * 109.47517 * 284.75243 * 26 25 24 44 44 H 1.08999 * 109.47255 * 44.75260 * 26 25 24 45 45 H 1.08994 * 109.47335 * 322.40092 * 27 25 24 46 46 H 1.09003 * 109.47378 * 82.40426 * 27 25 24 47 47 H 1.09002 * 109.47050 * 202.40055 * 27 25 24 48 48 H 1.09004 * 113.61889 * 25.34868 * 28 23 3 49 49 H 1.09004 * 113.60960 * 156.24900 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1591 2.0463 -1.1637 5 8 1.8427 1.5153 -2.2081 6 6 2.7045 3.4368 -1.1679 7 8 2.9148 4.0093 -0.1188 8 7 2.9630 4.0557 -2.3370 9 6 3.5440 5.3197 -2.3414 10 6 3.4421 6.1293 -1.2073 11 6 4.0259 7.3869 -1.2118 12 6 4.6870 7.8078 -2.3518 13 6 4.7504 6.9486 -3.4629 14 6 5.4229 7.3643 -4.6345 15 1 5.9570 8.3030 -4.6463 16 6 5.3967 6.5592 -5.7798 17 7 4.6679 5.4740 -5.7995 18 14 6.4030 7.0357 -7.2796 19 1 7.7087 6.3291 -7.2446 20 1 5.6667 6.6542 -8.5115 21 1 6.6338 8.5027 -7.2752 22 7 4.1793 5.7408 -3.4182 23 6 2.3537 2.0395 1.2652 24 6 2.5294 1.0630 2.4400 25 6 4.0121 0.9701 2.0363 26 6 4.2986 -0.1296 1.0119 27 6 4.9737 0.9391 3.2260 28 6 3.8492 2.3660 1.4121 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7441 3.6197 -3.1754 35 1 2.9156 5.7769 -0.3326 36 1 3.9621 8.0268 -0.3441 37 1 5.1487 8.7834 -2.3877 38 1 4.6500 4.9161 -6.5928 39 1 1.6987 2.8810 1.4910 40 1 2.3705 1.5213 3.4162 41 1 1.9827 0.1281 2.3162 42 1 5.2837 0.0301 0.5734 43 1 4.2737 -1.1012 1.5053 44 1 3.5427 -0.1011 0.2272 45 1 4.6062 1.6039 4.0076 46 1 5.0386 -0.0773 3.6144 47 1 5.9614 1.2685 2.9035 48 1 4.3666 2.4816 0.4597 49 1 4.0518 3.1813 2.1068 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890331721.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:04 Heat of formation + Delta-G solvation = 6.407337 kcal Electronic energy + Delta-G solvation = -31440.829451 eV Core-core repulsion = 27369.571992 eV Total energy + Delta-G solvation = -4071.257459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.65780 -41.12994 -39.91967 -39.25853 -36.46387 -35.83858 -35.09593 -32.51367 -32.34527 -31.26133 -30.59685 -28.41346 -27.72818 -26.96671 -26.21155 -24.14806 -23.66879 -23.54586 -22.27289 -20.98322 -19.68142 -19.34431 -18.44079 -18.23695 -17.71306 -17.46830 -16.83647 -16.58894 -16.46834 -16.23192 -15.83876 -15.40624 -15.04509 -15.00302 -14.91379 -14.67050 -14.52710 -14.16503 -13.87419 -13.85404 -13.61264 -13.44070 -13.13673 -12.93165 -12.88536 -12.74980 -12.73413 -12.64489 -12.45540 -12.16391 -12.09325 -11.91256 -11.82694 -11.70734 -11.57928 -11.22203 -11.08402 -10.82371 -10.32466 -10.02332 -9.79677 -9.68106 -9.09522 -8.34938 -6.53475 0.07857 0.90615 1.11862 1.16938 1.40899 1.53059 1.55751 2.06282 2.22205 2.28176 2.83956 3.12936 3.43948 3.55322 3.80540 3.87518 3.91356 4.00588 4.18969 4.30493 4.37518 4.44147 4.53247 4.57747 4.67616 4.74742 4.80369 4.81241 4.85214 4.87094 4.90522 4.92491 4.97613 5.00601 5.03386 5.15922 5.20039 5.21715 5.22719 5.28883 5.35532 5.50466 5.52989 5.54611 5.57207 5.82647 5.91100 6.02596 6.20078 6.30269 6.59576 6.72981 6.83732 6.97071 8.05011 8.42130 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.002971 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.086893 B = 9422.000921 C = 9995.338667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.095 3.905 3 N -0.552 5.552 4 C 0.514 3.486 5 O -0.542 6.542 6 C 0.500 3.500 7 O -0.489 6.489 8 N -0.623 5.623 9 C 0.340 3.660 10 C -0.316 4.316 11 C -0.046 4.046 12 C -0.300 4.300 13 C 0.246 3.754 14 C -0.466 4.466 15 H 0.095 0.905 16 C 0.026 3.974 17 N -0.758 5.758 18 Si 0.989 3.011 19 H -0.266 1.266 20 H -0.269 1.269 21 H -0.252 1.252 22 N -0.537 5.537 23 C 0.114 3.886 24 C -0.119 4.119 25 C -0.092 4.092 26 C -0.148 4.148 27 C -0.130 4.130 28 C -0.120 4.120 29 H 0.035 0.965 30 H 0.092 0.908 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.126 0.874 34 H 0.415 0.585 35 H 0.147 0.853 36 H 0.137 0.863 37 H 0.116 0.884 38 H 0.279 0.721 39 H 0.089 0.911 40 H 0.116 0.884 41 H 0.099 0.901 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.062 0.938 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.042 0.958 48 H 0.031 0.969 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.866 -13.303 15.701 21.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.025 4.025 3 N -0.285 5.285 4 C 0.296 3.704 5 O -0.420 6.420 6 C 0.281 3.719 7 O -0.363 6.363 8 N -0.268 5.268 9 C 0.105 3.895 10 C -0.340 4.340 11 C -0.070 4.070 12 C -0.322 4.322 13 C 0.119 3.881 14 C -0.498 4.498 15 H 0.113 0.887 16 C -0.196 4.196 17 N -0.380 5.380 18 Si 0.809 3.191 19 H -0.191 1.191 20 H -0.194 1.194 21 H -0.175 1.175 22 N -0.256 5.256 23 C 0.011 3.989 24 C -0.156 4.156 25 C -0.092 4.092 26 C -0.205 4.205 27 C -0.188 4.188 28 C -0.158 4.158 29 H 0.054 0.946 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.143 0.857 34 H 0.252 0.748 35 H 0.164 0.836 36 H 0.155 0.845 37 H 0.134 0.866 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.058 0.942 43 H 0.099 0.901 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.062 0.938 48 H 0.050 0.950 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -4.923 -13.949 15.086 21.128 hybrid contribution 0.418 0.899 -0.907 1.344 sum -4.505 -13.050 14.178 19.790 Atomic orbital electron populations 1.22124 0.94431 1.03721 1.01916 1.22062 0.95484 0.80099 1.04839 1.47667 1.61454 1.14432 1.04929 1.19738 0.79830 0.86058 0.84792 1.90753 1.50420 1.68776 1.32007 1.20334 0.79851 0.87983 0.83693 1.90625 1.49624 1.65386 1.30704 1.42935 1.57475 1.16432 1.10005 1.18793 0.93296 0.84984 0.92404 1.21979 1.14283 0.96931 1.00840 1.21221 0.94001 0.94813 0.97015 1.21960 1.11963 1.01998 0.96327 1.18689 0.89618 0.86506 0.93274 1.19976 1.28600 1.06068 0.95149 0.88741 1.26985 0.95640 0.93899 1.03058 1.70172 1.28791 1.10303 1.28710 0.85102 0.78108 0.80049 0.75866 1.19130 1.19360 1.17534 1.67970 1.14949 1.17790 1.24896 1.22253 0.97208 0.96356 0.83081 1.23514 0.95123 0.99699 0.97268 1.21977 0.96212 0.94643 0.96358 1.21985 1.01394 0.98333 0.98753 1.21675 0.98100 1.02531 0.96461 1.23300 0.95188 0.97445 0.99910 0.94610 0.88911 0.91284 0.90679 0.85674 0.74806 0.83559 0.84490 0.86564 0.91045 0.89342 0.86533 0.88324 0.94225 0.90110 0.91913 0.91546 0.91291 0.93844 0.95043 0.89123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.61 10.21 71.98 0.73 -1.87 16 2 C 0.09 1.69 3.69 86.38 0.32 2.01 16 3 N -0.55 -13.44 1.74 -796.58 -1.38 -14.82 16 4 C 0.51 17.06 7.51 87.25 0.66 17.72 16 5 O -0.54 -20.20 16.16 -3.28 -0.05 -20.26 16 6 C 0.50 19.24 6.96 87.24 0.61 19.84 16 7 O -0.49 -18.56 8.47 -3.25 -0.03 -18.59 16 8 N -0.62 -27.83 5.40 -309.71 -1.67 -29.50 16 9 C 0.34 17.42 7.49 133.31 1.00 18.42 16 10 C -0.32 -15.01 8.88 22.72 0.20 -14.80 16 11 C -0.05 -2.10 10.15 22.39 0.23 -1.87 16 12 C -0.30 -14.98 9.83 22.87 0.22 -14.76 16 13 C 0.25 13.88 6.54 40.20 0.26 14.15 16 14 C -0.47 -25.47 9.13 23.47 0.21 -25.26 16 15 H 0.09 4.78 7.85 -2.91 -0.02 4.75 16 16 C 0.03 1.33 5.48 85.29 0.47 1.80 16 17 N -0.76 -41.35 11.51 21.84 0.25 -41.10 16 18 Si 0.99 38.51 29.56 68.60 2.03 40.54 16 19 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 20 H -0.27 -10.05 7.11 99.48 0.71 -9.34 16 21 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 22 N -0.54 -30.69 7.95 -186.42 -1.48 -32.17 16 23 C 0.11 2.46 3.30 45.51 0.15 2.61 16 24 C -0.12 -1.60 6.67 31.18 0.21 -1.39 16 25 C -0.09 -1.60 1.39 -51.60 -0.07 -1.67 16 26 C -0.15 -2.67 8.31 71.98 0.60 -2.07 16 27 C -0.13 -1.93 9.20 71.98 0.66 -1.27 16 28 C -0.12 -2.98 4.89 31.12 0.15 -2.83 16 29 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.07 1.54 7.44 -2.38 -0.02 1.52 16 33 H 0.13 1.47 4.20 -2.39 -0.01 1.46 16 34 H 0.42 18.64 8.30 -92.70 -0.77 17.87 16 35 H 0.15 6.54 5.23 -6.17 -0.03 6.51 16 36 H 0.14 5.09 8.06 -2.91 -0.02 5.06 16 37 H 0.12 5.26 8.06 -2.91 -0.02 5.24 16 38 H 0.28 13.83 8.29 -92.70 -0.77 13.06 16 39 H 0.09 2.07 7.59 -2.39 -0.02 2.05 16 40 H 0.12 1.18 7.98 -2.39 -0.02 1.16 16 41 H 0.10 0.95 5.60 -2.38 -0.01 0.93 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 1.25 3.57 -2.39 -0.01 1.24 16 45 H 0.07 0.86 7.96 -2.39 -0.02 0.84 16 46 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 48 H 0.03 1.01 6.54 -2.39 -0.02 1.00 16 49 H 0.09 2.27 8.10 -2.38 -0.02 2.25 16 Total: -1.00 -68.00 383.49 4.48 -63.52 By element: Atomic # 1 Polarization: 43.42 SS G_CDS: 0.20 Total: 43.62 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: 6.61 Total: 8.76 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -4.29 Total: -117.59 kcal Atomic # 8 Polarization: -38.77 SS G_CDS: -0.08 Total: -38.85 kcal Atomic # 14 Polarization: 38.51 SS G_CDS: 2.03 Total: 40.54 kcal Total: -68.00 4.48 -63.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890331721.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.926 kcal (2) G-P(sol) polarization free energy of solvation -67.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds