Wall clock time and date at job start Wed Apr 1 2020 02:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47109 * 2 1 4 4 C 1.48192 * 111.07565 * 269.29520 * 3 2 1 5 5 C 1.53939 * 86.22203 * 222.53687 * 4 3 2 6 6 C 1.47955 * 111.00302 * 170.00097 * 3 2 1 7 7 H 1.09009 * 113.75831 * 23.15608 * 6 3 2 8 8 C 1.52995 * 113.76231 * 251.90190 * 6 3 2 9 9 N 1.46505 * 109.46885 * 56.97752 * 8 6 3 10 10 C 1.34777 * 119.99884 * 179.97438 * 9 8 6 11 11 O 1.21355 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.49451 * 120.00077 * 180.02562 * 10 9 8 13 13 O 1.21348 * 119.99864 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99970 * 180.02562 * 12 10 9 15 15 C 1.46505 * 119.99777 * 179.97438 * 14 12 10 16 16 C 1.50694 * 109.46996 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.75351 * 269.73213 * 16 15 14 18 18 C 1.37615 * 120.25050 * 179.72508 * 17 16 15 19 19 C 1.40714 * 119.74470 * 0.52164 * 18 17 16 20 20 C 1.41393 * 120.24640 * 179.73085 * 19 18 17 21 21 H 1.07994 * 119.99976 * 204.40800 * 20 19 18 22 22 C 1.39945 * 119.99801 * 24.39906 * 20 19 18 23 23 N 1.30822 * 120.00313 * 17.85713 * 22 20 19 24 24 Si 1.86801 * 119.99755 * 197.84902 * 22 20 19 25 25 H 1.48500 * 109.46897 * 90.00490 * 24 22 20 26 26 H 1.48500 * 109.47052 * 210.00166 * 24 22 20 27 27 H 1.48500 * 109.47405 * 330.00287 * 24 22 20 28 28 C 1.40717 * 119.51107 * 359.74668 * 19 18 17 29 29 C 1.37615 * 119.74467 * 0.02562 * 28 19 18 30 30 H 1.08997 * 109.46982 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.46603 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47038 * 299.99687 * 1 2 3 33 33 H 1.09002 * 109.46762 * 240.00499 * 2 1 3 34 34 H 1.08998 * 109.47491 * 120.00105 * 2 1 3 35 35 H 1.09001 * 113.82391 * 108.19253 * 4 3 2 36 36 H 1.08998 * 113.75305 * 336.86763 * 4 3 2 37 37 H 1.09000 * 113.72891 * 269.27019 * 5 4 3 38 38 H 1.08993 * 113.82844 * 137.99884 * 5 4 3 39 39 H 1.08998 * 109.47509 * 176.97382 * 8 6 3 40 40 H 1.09004 * 109.47471 * 296.98041 * 8 6 3 41 41 H 0.96996 * 120.00000 * 0.02562 * 9 8 6 42 42 H 0.96996 * 120.00223 * 359.97438 * 14 12 10 43 43 H 1.08998 * 109.46745 * 299.99627 * 15 14 12 44 44 H 1.09004 * 109.46830 * 59.99426 * 15 14 12 45 45 H 1.08001 * 119.86861 * 359.97438 * 17 16 15 46 46 H 1.07998 * 120.12474 * 180.27047 * 18 17 16 47 47 H 0.96993 * 120.00320 * 180.02562 * 23 22 20 48 48 H 1.07998 * 120.12836 * 179.97438 * 28 19 18 49 49 H 1.08003 * 119.87782 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2134 1.8817 -1.3827 5 6 3.5264 2.4990 -0.8683 6 6 3.4790 1.4315 0.2398 7 1 3.9961 0.5073 -0.0183 8 6 3.8597 1.9620 1.6234 9 7 3.2174 1.1427 2.6542 10 6 3.4113 1.4255 3.9576 11 8 4.1177 2.3591 4.2774 12 6 2.7566 0.5894 5.0092 13 8 2.0507 -0.3444 4.6895 14 7 2.9502 0.8726 6.3126 15 6 2.3078 0.0533 7.3434 16 6 2.6834 0.5754 8.7063 17 6 3.8085 0.0797 9.3469 18 6 4.1640 0.5532 10.5891 19 6 3.3745 1.5363 11.2137 20 6 3.7268 2.0263 12.4924 21 1 2.9705 2.4536 13.1341 22 6 5.0554 1.9572 12.9265 23 7 6.0183 1.7762 12.0596 24 14 5.4540 2.1238 14.7439 25 1 5.4375 0.7817 15.3792 26 1 6.8006 2.7296 14.9018 27 1 4.4410 2.9924 15.3953 28 6 2.2315 2.0281 10.5565 29 6 1.8977 1.5434 9.3126 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.4734 2.6194 -1.6932 36 1 2.3587 1.0898 -2.1174 37 1 3.4169 3.5189 -0.4998 38 1 4.3658 2.3828 -1.5538 39 1 4.9419 1.9161 1.7451 40 1 3.5265 2.9953 1.7208 41 1 2.6531 0.3963 2.3987 42 1 3.5147 1.6188 6.5682 43 1 1.2256 0.0992 7.2219 44 1 2.6409 -0.9801 7.2460 45 1 4.4105 -0.6780 8.8674 46 1 5.0434 0.1688 11.0844 47 1 6.9391 1.7280 12.3605 48 1 1.6182 2.7823 11.0269 49 1 1.0207 1.9190 8.8064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000898099365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:23 Heat of formation + Delta-G solvation = -25.536059 kcal Electronic energy + Delta-G solvation = -28849.210453 eV Core-core repulsion = 24776.567825 eV Total energy + Delta-G solvation = -4072.642628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.83582 -40.11479 -38.38359 -37.60433 -35.28365 -34.50393 -33.42062 -33.14813 -30.42882 -29.37477 -29.17975 -27.61600 -27.22454 -24.98813 -23.72085 -22.60235 -22.18321 -21.08796 -20.46803 -20.16894 -19.91401 -18.45395 -17.39426 -16.78788 -16.74147 -15.94779 -15.82134 -15.63914 -15.41111 -15.07562 -14.71421 -14.50263 -14.13562 -14.00776 -13.81979 -13.58942 -13.33494 -13.21972 -12.78107 -12.56829 -12.53933 -12.34098 -12.05044 -11.99836 -11.72713 -11.71472 -11.56478 -11.45040 -11.17766 -11.09793 -11.04941 -11.00534 -10.72504 -10.46775 -9.76807 -9.52085 -9.46574 -9.33631 -9.25679 -9.20846 -8.81997 -7.57675 -7.46063 -6.86960 -4.46835 1.59390 2.33642 2.71724 2.98896 3.02593 3.05842 3.09906 3.34151 3.40146 3.85344 3.87718 4.04059 4.26048 4.48507 4.55017 4.59638 4.71054 4.78020 4.80460 4.91876 5.13015 5.19210 5.21945 5.37025 5.42960 5.50361 5.59101 5.61384 5.66645 5.73363 5.83107 5.88183 5.95118 6.16070 6.17872 6.24477 6.32668 6.58997 6.59811 6.86794 6.97550 7.06482 7.17501 7.25917 7.50949 7.56930 7.75638 7.92265 7.95629 8.00106 8.18654 8.23189 8.53646 8.78487 8.86255 10.06923 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.001728 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.619043 B =16202.636292 C =16832.174125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 N -0.473 5.473 4 C 0.002 3.998 5 C -0.134 4.134 6 C 0.013 3.987 7 H 0.087 0.913 8 C 0.139 3.861 9 N -0.699 5.699 10 C 0.505 3.495 11 O -0.519 6.519 12 C 0.498 3.502 13 O -0.537 6.537 14 N -0.682 5.682 15 C 0.182 3.818 16 C -0.250 4.250 17 C -0.079 4.079 18 C -0.170 4.170 19 C 0.117 3.883 20 C -0.457 4.457 21 H 0.080 0.920 22 C 0.075 3.925 23 N -0.785 5.785 24 Si 0.910 3.090 25 H -0.267 1.267 26 H -0.277 1.277 27 H -0.261 1.261 28 C -0.229 4.229 29 C -0.067 4.067 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.410 0.590 42 H 0.414 0.586 43 H 0.064 0.936 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.119 0.881 47 H 0.283 0.717 48 H 0.094 0.906 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.320 -1.941 -23.605 23.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 N -0.196 5.196 4 C -0.126 4.126 5 C -0.172 4.172 6 C -0.097 4.097 7 H 0.105 0.895 8 C 0.015 3.985 9 N -0.353 5.353 10 C 0.286 3.714 11 O -0.394 6.394 12 C 0.278 3.722 13 O -0.416 6.416 14 N -0.334 5.334 15 C 0.061 3.939 16 C -0.252 4.252 17 C -0.098 4.098 18 C -0.189 4.189 19 C 0.114 3.886 20 C -0.486 4.486 21 H 0.098 0.902 22 C -0.144 4.144 23 N -0.410 5.410 24 Si 0.735 3.265 25 H -0.192 1.192 26 H -0.202 1.202 27 H -0.185 1.185 28 C -0.249 4.249 29 C -0.086 4.086 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.246 0.754 42 H 0.250 0.750 43 H 0.082 0.918 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.137 0.863 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -3.513 -1.626 -23.142 23.464 hybrid contribution 0.790 -0.471 0.235 0.949 sum -2.723 -2.097 -22.908 23.164 Atomic orbital electron populations 1.21654 0.94159 1.01634 1.02610 1.22709 0.97562 0.90196 1.01093 1.68617 1.13129 1.19549 1.18317 1.23952 0.97736 0.99852 0.91096 1.23347 0.97791 0.99429 0.96680 1.23764 0.90961 0.99597 0.95402 0.89512 1.21374 0.97604 0.95486 0.84045 1.45647 1.50643 1.34257 1.04759 1.20411 0.81986 0.85036 0.83985 1.90779 1.37421 1.29285 1.81885 1.20078 0.82589 0.85105 0.84400 1.90713 1.38769 1.30036 1.82071 1.46487 1.48832 1.33707 1.04331 1.20122 0.96293 0.93248 0.84191 1.18923 1.02034 1.07871 0.96378 1.20556 0.95095 0.98516 0.95645 1.21308 1.02361 0.99396 0.95821 1.17688 0.90110 0.88720 0.92047 1.19681 0.93735 1.34830 1.00305 0.90190 1.25967 0.96141 0.92382 0.99909 1.69818 1.01214 1.34126 1.35823 0.86273 0.78456 0.79553 0.82263 1.19164 1.20224 1.18517 1.20971 1.02499 1.04975 0.96427 1.20412 0.97238 0.95744 0.95225 0.92849 0.92257 0.91634 0.93701 0.90943 0.89109 0.91111 0.88511 0.90454 0.90488 0.90274 0.75351 0.74971 0.91769 0.91745 0.89334 0.86317 0.90635 0.88811 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 10.22 37.16 0.38 -0.67 16 2 C 0.01 0.09 5.32 -3.82 -0.02 0.07 16 3 N -0.47 -3.62 5.80 -229.68 -1.33 -4.95 16 4 C 0.00 0.01 7.97 -2.64 -0.02 -0.01 16 5 C -0.13 -0.71 7.84 -25.79 -0.20 -0.91 16 6 C 0.01 0.09 3.41 -66.66 -0.23 -0.14 16 7 H 0.09 0.52 7.92 -51.92 -0.41 0.11 16 8 C 0.14 1.30 5.83 -4.04 -0.02 1.27 16 9 N -0.70 -8.22 5.48 -60.73 -0.33 -8.55 16 10 C 0.51 7.61 7.89 -11.58 -0.09 7.52 16 11 O -0.52 -8.98 16.48 5.49 0.09 -8.89 16 12 C 0.50 8.21 7.89 -11.58 -0.09 8.12 16 13 O -0.54 -9.50 16.48 5.50 0.09 -9.41 16 14 N -0.68 -11.70 5.54 -61.91 -0.34 -12.04 16 15 C 0.18 3.27 5.79 -5.19 -0.03 3.24 16 16 C -0.25 -5.20 5.27 -104.33 -0.55 -5.75 16 17 C -0.08 -1.77 9.67 -39.66 -0.38 -2.15 16 18 C -0.17 -4.26 8.70 -38.87 -0.34 -4.60 16 19 C 0.12 3.03 5.57 -106.83 -0.60 2.43 16 20 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 21 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 22 C 0.07 1.83 5.14 -17.34 -0.09 1.74 16 23 N -0.79 -19.76 10.95 55.55 0.61 -19.15 16 24 Si 0.91 18.16 29.60 -169.99 -5.03 13.13 16 25 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 26 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 27 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 28 C -0.23 -5.45 9.80 -38.87 -0.38 -5.83 16 29 C -0.07 -1.45 9.67 -39.66 -0.38 -1.83 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.04 0.27 7.38 -51.93 -0.38 -0.11 16 34 H 0.07 0.57 6.42 -51.93 -0.33 0.24 16 35 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.33 7.48 -51.93 -0.39 -0.06 16 37 H 0.10 0.54 7.92 -51.93 -0.41 0.13 16 38 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.80 7.88 -51.93 -0.41 0.40 16 41 H 0.41 4.57 5.94 -40.82 -0.24 4.32 16 42 H 0.41 7.28 7.94 -40.82 -0.32 6.95 16 43 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 44 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 45 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 46 H 0.12 3.09 6.16 -52.49 -0.32 2.76 16 47 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 48 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 49 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 407.09 15.07 6.13 6.13 Total: -1.00 -28.57 407.09 -10.92 -39.49 By element: Atomic # 1 Polarization: 21.27 SS G_CDS: -7.42 Total: 13.85 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.39 Total: -9.61 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -1.40 Total: -44.70 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: 0.18 Total: -18.30 kcal Atomic # 14 Polarization: 18.16 SS G_CDS: -5.03 Total: 13.13 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.57 -10.92 -39.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898099365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.957 kcal (2) G-P(sol) polarization free energy of solvation -28.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds