Wall clock time and date at job start Wed Apr 1 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46899 * 109.47109 * 2 1 4 4 C 1.48192 * 111.07565 * 269.29520 * 3 2 1 5 5 C 1.53939 * 86.22203 * 222.53687 * 4 3 2 6 6 C 1.47955 * 111.00302 * 170.00097 * 3 2 1 7 7 H 1.09009 * 113.75831 * 23.15608 * 6 3 2 8 8 C 1.52995 * 113.76231 * 251.90190 * 6 3 2 9 9 N 1.46505 * 109.46885 * 56.97752 * 8 6 3 10 10 C 1.34777 * 119.99884 * 179.97438 * 9 8 6 11 11 O 1.21355 * 119.99880 * 0.02562 * 10 9 8 12 12 C 1.49451 * 120.00077 * 180.02562 * 10 9 8 13 13 O 1.21348 * 119.99864 * 0.02562 * 12 10 9 14 14 N 1.34778 * 119.99970 * 180.02562 * 12 10 9 15 15 C 1.46505 * 119.99777 * 179.97438 * 14 12 10 16 16 C 1.50694 * 109.46996 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.75351 * 269.73213 * 16 15 14 18 18 C 1.37615 * 120.25050 * 179.72508 * 17 16 15 19 19 C 1.40714 * 119.74470 * 0.52164 * 18 17 16 20 20 C 1.41393 * 120.24640 * 179.73085 * 19 18 17 21 21 H 1.07994 * 119.99976 * 204.40800 * 20 19 18 22 22 C 1.39945 * 119.99801 * 24.39906 * 20 19 18 23 23 N 1.30822 * 120.00313 * 17.85713 * 22 20 19 24 24 Si 1.86801 * 119.99755 * 197.84902 * 22 20 19 25 25 H 1.48500 * 109.46897 * 90.00490 * 24 22 20 26 26 H 1.48500 * 109.47052 * 210.00166 * 24 22 20 27 27 H 1.48500 * 109.47405 * 330.00287 * 24 22 20 28 28 C 1.40717 * 119.51107 * 359.74668 * 19 18 17 29 29 C 1.37615 * 119.74467 * 0.02562 * 28 19 18 30 30 H 1.08997 * 109.46982 * 59.99994 * 1 2 3 31 31 H 1.09000 * 109.46603 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47038 * 299.99687 * 1 2 3 33 33 H 1.09002 * 109.46762 * 240.00499 * 2 1 3 34 34 H 1.08998 * 109.47491 * 120.00105 * 2 1 3 35 35 H 1.09001 * 113.82391 * 108.19253 * 4 3 2 36 36 H 1.08998 * 113.75305 * 336.86763 * 4 3 2 37 37 H 1.09000 * 113.72891 * 269.27019 * 5 4 3 38 38 H 1.08993 * 113.82844 * 137.99884 * 5 4 3 39 39 H 1.08998 * 109.47509 * 176.97382 * 8 6 3 40 40 H 1.09004 * 109.47471 * 296.98041 * 8 6 3 41 41 H 0.96996 * 120.00000 * 0.02562 * 9 8 6 42 42 H 0.96996 * 120.00223 * 359.97438 * 14 12 10 43 43 H 1.08998 * 109.46745 * 299.99627 * 15 14 12 44 44 H 1.09004 * 109.46830 * 59.99426 * 15 14 12 45 45 H 1.08001 * 119.86861 * 359.97438 * 17 16 15 46 46 H 1.07998 * 120.12474 * 180.27047 * 18 17 16 47 47 H 0.96993 * 120.00320 * 180.02562 * 23 22 20 48 48 H 1.07998 * 120.12836 * 179.97438 * 28 19 18 49 49 H 1.08003 * 119.87782 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 2.2134 1.8817 -1.3827 5 6 3.5264 2.4990 -0.8683 6 6 3.4790 1.4315 0.2398 7 1 3.9961 0.5073 -0.0183 8 6 3.8597 1.9620 1.6234 9 7 3.2174 1.1427 2.6542 10 6 3.4113 1.4255 3.9576 11 8 4.1177 2.3591 4.2774 12 6 2.7566 0.5894 5.0092 13 8 2.0507 -0.3444 4.6895 14 7 2.9502 0.8726 6.3126 15 6 2.3078 0.0533 7.3434 16 6 2.6834 0.5754 8.7063 17 6 3.8085 0.0797 9.3469 18 6 4.1640 0.5532 10.5891 19 6 3.3745 1.5363 11.2137 20 6 3.7268 2.0263 12.4924 21 1 2.9705 2.4536 13.1341 22 6 5.0554 1.9572 12.9265 23 7 6.0183 1.7762 12.0596 24 14 5.4540 2.1238 14.7439 25 1 5.4375 0.7817 15.3792 26 1 6.8006 2.7296 14.9018 27 1 4.4410 2.9924 15.3953 28 6 2.2315 2.0281 10.5565 29 6 1.8977 1.5434 9.3126 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 1.4734 2.6194 -1.6932 36 1 2.3587 1.0898 -2.1174 37 1 3.4169 3.5189 -0.4998 38 1 4.3658 2.3828 -1.5538 39 1 4.9419 1.9161 1.7451 40 1 3.5265 2.9953 1.7208 41 1 2.6531 0.3963 2.3987 42 1 3.5147 1.6188 6.5682 43 1 1.2256 0.0992 7.2219 44 1 2.6409 -0.9801 7.2460 45 1 4.4105 -0.6780 8.8674 46 1 5.0434 0.1688 11.0844 47 1 6.9391 1.7280 12.3605 48 1 1.6182 2.7823 11.0269 49 1 1.0207 1.9190 8.8064 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000898099365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:21 Heat of formation + Delta-G solvation = -44.921971 kcal Electronic energy + Delta-G solvation = -28850.051089 eV Core-core repulsion = 24776.567825 eV Total energy + Delta-G solvation = -4073.483264 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.80666 -40.97169 -39.79268 -39.23090 -36.63631 -35.82788 -35.01552 -33.72463 -32.15552 -31.19280 -30.03755 -28.82644 -28.12162 -26.32335 -24.90426 -23.58947 -22.92010 -22.82155 -21.87309 -21.50832 -20.68505 -19.62703 -19.25205 -17.99378 -17.39849 -17.23424 -16.94262 -16.78091 -16.68865 -16.13751 -15.90146 -15.75530 -15.56101 -15.22590 -15.08460 -14.71372 -14.57346 -14.22734 -14.04501 -13.84140 -13.60179 -13.45108 -13.29824 -13.18682 -12.93556 -12.87871 -12.82268 -12.73255 -12.49132 -12.21695 -12.11281 -12.02488 -11.63977 -11.53754 -11.51337 -11.30430 -11.07933 -10.74973 -10.34198 -10.21382 -9.78230 -9.41358 -9.30494 -8.68047 -6.38498 0.32750 0.76862 1.12715 1.34294 1.38919 1.51481 1.56863 2.12592 2.19305 2.52753 2.75310 2.95876 3.43833 3.55488 3.71462 3.73197 3.99417 4.02804 4.11181 4.22322 4.28224 4.31277 4.41881 4.49631 4.52873 4.61398 4.63339 4.71438 4.76991 4.80852 4.87393 4.98527 5.03236 5.05441 5.12585 5.13227 5.18857 5.22233 5.32574 5.33983 5.41822 5.46343 5.67109 5.84610 5.96119 6.07383 6.09308 6.17293 6.34156 6.35581 6.66215 6.69902 6.90287 6.92206 6.99092 8.28434 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024629 B = 0.001728 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.619043 B =16202.636292 C =16832.174125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.013 3.987 3 N -0.496 5.496 4 C 0.005 3.995 5 C -0.126 4.126 6 C 0.015 3.985 7 H 0.101 0.899 8 C 0.135 3.865 9 N -0.682 5.682 10 C 0.507 3.493 11 O -0.545 6.545 12 C 0.502 3.498 13 O -0.548 6.548 14 N -0.684 5.684 15 C 0.190 3.810 16 C -0.234 4.234 17 C -0.081 4.081 18 C -0.193 4.193 19 C 0.086 3.914 20 C -0.495 4.495 21 H 0.077 0.923 22 C 0.035 3.965 23 N -0.819 5.819 24 Si 0.983 3.017 25 H -0.262 1.262 26 H -0.268 1.268 27 H -0.258 1.258 28 C -0.244 4.244 29 C -0.067 4.067 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.045 0.955 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.414 0.586 42 H 0.412 0.588 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.107 0.893 46 H 0.102 0.898 47 H 0.290 0.710 48 H 0.099 0.901 49 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.501 -2.340 -25.587 25.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 N -0.220 5.220 4 C -0.123 4.123 5 C -0.164 4.164 6 C -0.094 4.094 7 H 0.118 0.882 8 C 0.012 3.988 9 N -0.335 5.335 10 C 0.287 3.713 11 O -0.423 6.423 12 C 0.282 3.718 13 O -0.427 6.427 14 N -0.335 5.335 15 C 0.069 3.931 16 C -0.235 4.235 17 C -0.100 4.100 18 C -0.213 4.213 19 C 0.083 3.917 20 C -0.524 4.524 21 H 0.095 0.905 22 C -0.181 4.181 23 N -0.444 5.444 24 Si 0.804 3.196 25 H -0.186 1.186 26 H -0.193 1.193 27 H -0.182 1.182 28 C -0.264 4.264 29 C -0.086 4.086 30 H 0.076 0.924 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.252 0.748 42 H 0.248 0.752 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.100 0.900 48 H 0.117 0.883 49 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.716 -2.038 -25.177 25.532 hybrid contribution 0.751 -0.388 0.636 1.058 sum -2.965 -2.426 -24.541 24.839 Atomic orbital electron populations 1.21630 0.94516 1.01854 1.01844 1.22713 0.97260 0.90243 1.01361 1.68605 1.13553 1.19837 1.19966 1.24002 0.97802 1.00161 0.90353 1.23318 0.98383 0.98598 0.96100 1.23779 0.90837 1.00741 0.94081 0.88155 1.21592 0.97730 0.94825 0.84665 1.45692 1.49663 1.34047 1.04100 1.20142 0.81878 0.84609 0.84675 1.90775 1.38848 1.30392 1.82310 1.20266 0.82203 0.84941 0.84343 1.90709 1.39234 1.30529 1.82211 1.46321 1.48966 1.33633 1.04604 1.20009 0.96999 0.93463 0.82645 1.19185 1.00605 1.06375 0.97369 1.20785 0.95727 0.98650 0.94819 1.21275 1.02451 1.00375 0.97181 1.18036 0.91292 0.89525 0.92845 1.19911 0.94708 1.36753 1.01016 0.90455 1.26790 0.95456 0.91529 1.04308 1.69866 1.01755 1.34964 1.37822 0.85186 0.78418 0.79630 0.76399 1.18634 1.19257 1.18174 1.21168 1.02293 1.05482 0.97449 1.20718 0.98047 0.95369 0.94442 0.92364 0.91577 0.93577 0.92185 0.91832 0.89121 0.89686 0.88986 0.88552 0.89949 0.91103 0.74821 0.75150 0.90617 0.90985 0.87508 0.88027 0.89971 0.88318 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.22 71.98 0.74 -1.17 16 2 C 0.01 0.16 5.32 86.30 0.46 0.62 16 3 N -0.50 -6.68 5.80 -880.58 -5.10 -11.78 16 4 C 0.01 0.04 7.97 86.36 0.69 0.73 16 5 C -0.13 -1.02 7.84 31.24 0.25 -0.77 16 6 C 0.02 0.18 3.41 45.02 0.15 0.33 16 7 H 0.10 0.92 7.92 -2.38 -0.02 0.90 16 8 C 0.13 2.33 5.83 86.38 0.50 2.83 16 9 N -0.68 -15.18 5.48 -464.40 -2.54 -17.72 16 10 C 0.51 14.75 7.89 87.27 0.69 15.44 16 11 O -0.55 -18.56 16.48 -3.26 -0.05 -18.62 16 12 C 0.50 15.84 7.89 87.27 0.69 16.53 16 13 O -0.55 -18.43 16.48 -3.24 -0.05 -18.49 16 14 N -0.68 -22.48 5.54 -468.13 -2.59 -25.07 16 15 C 0.19 6.43 5.79 85.63 0.50 6.93 16 16 C -0.23 -9.45 5.27 -19.68 -0.10 -9.55 16 17 C -0.08 -3.62 9.67 22.22 0.21 -3.40 16 18 C -0.19 -9.99 8.70 22.73 0.20 -9.79 16 19 C 0.09 4.56 5.57 -21.29 -0.12 4.44 16 20 C -0.49 -26.41 9.05 23.46 0.21 -26.20 16 21 H 0.08 3.98 7.91 -2.91 -0.02 3.96 16 22 C 0.03 1.74 5.14 85.26 0.44 2.18 16 23 N -0.82 -42.40 10.95 21.83 0.24 -42.16 16 24 Si 0.98 37.75 29.60 68.60 2.03 39.78 16 25 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 26 H -0.27 -9.79 7.11 99.48 0.71 -9.09 16 27 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 28 C -0.24 -11.76 9.80 22.73 0.22 -11.53 16 29 C -0.07 -2.82 9.67 22.22 0.21 -2.61 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 0.57 7.38 -2.39 -0.02 0.56 16 34 H 0.06 0.90 6.42 -2.39 -0.02 0.89 16 35 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.52 7.48 -2.39 -0.02 0.50 16 37 H 0.09 0.85 7.92 -2.39 -0.02 0.83 16 38 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 1.37 7.88 -2.38 -0.02 1.36 16 41 H 0.41 8.65 5.94 -92.71 -0.55 8.09 16 42 H 0.41 14.11 7.94 -92.71 -0.74 13.37 16 43 H 0.08 2.43 8.08 -2.39 -0.02 2.41 16 44 H 0.07 2.37 8.08 -2.38 -0.02 2.35 16 45 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 46 H 0.10 5.52 6.16 -2.91 -0.02 5.50 16 47 H 0.29 13.54 8.30 -92.71 -0.77 12.77 16 48 H 0.10 4.51 8.06 -2.91 -0.02 4.49 16 49 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 Total: -1.00 -62.44 407.09 -2.45 -64.89 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: -0.31 Total: 44.15 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 5.94 Total: -14.98 kcal Atomic # 7 Polarization: -86.74 SS G_CDS: -10.00 Total: -96.74 kcal Atomic # 8 Polarization: -37.00 SS G_CDS: -0.11 Total: -37.10 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -62.44 -2.45 -64.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000898099365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.972 kcal (2) G-P(sol) polarization free energy of solvation -62.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds