Wall clock time and date at job start Wed Apr 1 2020 05:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21248 * 120.00204 * 2 1 4 4 C 1.47175 * 119.99785 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.17072 * 359.97438 * 4 2 1 6 6 C 1.37859 * 119.82531 * 180.02562 * 5 4 2 7 7 C 1.38429 * 120.17224 * 359.74612 * 6 5 4 8 8 C 1.38383 * 120.34532 * 0.50754 * 7 6 5 9 9 C 1.50702 * 119.91149 * 179.76894 * 8 7 6 10 10 N 1.46505 * 109.47123 * 269.72213 * 9 8 7 11 11 C 1.34773 * 120.00225 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00300 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.44009 * 84.79625 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 205.00269 * 14 13 11 28 28 C 1.37902 * 120.17454 * 359.49036 * 8 7 6 29 29 H 1.08997 * 109.47033 * 270.00295 * 1 2 3 30 30 H 1.08997 * 109.46597 * 30.00001 * 1 2 3 31 31 H 1.08993 * 109.47009 * 149.99943 * 1 2 3 32 32 H 1.08001 * 120.08341 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.91648 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.82910 * 180.27876 * 7 6 5 35 35 H 1.09000 * 109.47181 * 149.72915 * 9 8 7 36 36 H 1.08997 * 109.47315 * 29.72194 * 9 8 7 37 37 H 0.97005 * 119.99867 * 0.02562 * 10 9 8 38 38 H 0.97005 * 119.99791 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.45866 * 324.97703 * 14 13 11 40 40 H 1.09002 * 109.39343 * 61.36176 * 15 14 13 41 41 H 1.09003 * 109.62467 * 301.25403 * 15 14 13 42 42 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 43 43 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 44 44 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 46 46 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 47 47 H 1.09002 * 109.49555 * 58.67538 * 27 14 13 48 48 H 1.08992 * 109.52043 * 298.59539 * 27 14 13 49 49 H 1.08004 * 120.09136 * 180.22747 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5471 -2.4880 0.0017 6 6 2.2435 -3.6777 0.0027 7 6 3.6278 -3.6736 -0.0026 8 6 4.3233 -2.4773 0.0016 9 6 5.8303 -2.4843 0.0010 10 7 6.3192 -2.4849 1.3821 11 6 7.6443 -2.4913 1.6279 12 8 8.4341 -2.4960 0.7034 13 7 8.0941 -2.4924 2.8984 14 6 9.5345 -2.4987 3.1656 15 6 10.0657 -1.0637 3.1288 16 6 11.5773 -1.0769 3.3779 17 7 11.8463 -1.7908 4.6336 18 6 12.5890 -1.2053 5.6238 19 1 12.4246 -1.4788 6.6556 20 6 13.5532 -0.2601 5.3015 21 7 13.9912 -0.1624 4.0641 22 14 14.2290 0.8731 6.6237 23 1 14.8650 0.0622 7.6930 24 1 15.2381 1.7842 6.0264 25 1 13.1209 1.6742 7.2029 26 6 11.3035 -3.1453 4.8063 27 6 9.7945 -3.1088 4.5449 28 6 3.6412 -1.2788 0.0005 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 0.4670 -2.4927 0.0025 33 1 1.7077 -4.6155 0.0031 34 1 4.1677 -4.6089 -0.0063 35 1 6.1976 -1.5965 -0.5139 36 1 6.1894 -3.3765 -0.5119 37 1 5.6891 -2.4815 2.1196 38 1 7.4640 -2.4890 3.6359 39 1 10.0423 -3.0914 2.4047 40 1 9.5744 -0.4758 3.9041 41 1 9.8617 -0.6227 2.1530 42 1 11.9441 -0.0533 3.4537 43 1 12.0789 -1.5847 2.5541 44 1 14.6652 0.4978 3.8389 45 1 11.7807 -3.8232 4.0988 46 1 11.4920 -3.4873 5.8241 47 1 9.3954 -4.1227 4.5753 48 1 9.3073 -2.5030 5.3088 49 1 4.1854 -0.3460 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000917312892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:24 Heat of formation + Delta-G solvation = -22.980267 kcal Electronic energy + Delta-G solvation = -29068.900698 eV Core-core repulsion = 24996.368897 eV Total energy + Delta-G solvation = -4072.531801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -40.61661 -39.87799 -38.76059 -37.44232 -35.12868 -34.28738 -32.62310 -32.01695 -31.50334 -30.15053 -29.87582 -29.26722 -26.36879 -24.76478 -24.19807 -22.40629 -22.18451 -21.86576 -20.58791 -19.95464 -19.39693 -18.19922 -17.49496 -16.76269 -16.35484 -16.21922 -16.06899 -15.45726 -15.26379 -14.90142 -14.72338 -14.48595 -14.40063 -14.15318 -13.77824 -13.49710 -13.43261 -13.09913 -13.01261 -12.94875 -12.68741 -12.53899 -12.41381 -12.30735 -12.12149 -11.54730 -11.44318 -11.07750 -10.89656 -10.68948 -10.34736 -10.23365 -10.22012 -10.11183 -9.97953 -9.71498 -9.56866 -9.49760 -9.36454 -9.16746 -8.57863 -8.35051 -6.64488 -5.74800 -3.18043 0.14908 0.75165 1.90297 2.82711 3.34046 3.40928 3.40987 3.46906 3.47738 3.53033 4.13631 4.33362 4.42163 4.46201 4.52472 4.54918 4.71370 4.83202 4.84361 4.90404 5.16568 5.28656 5.34858 5.43664 5.44389 5.47506 5.50170 5.55513 5.69706 5.76536 5.83264 5.88257 6.04803 6.13491 6.28008 6.31784 6.39745 6.40984 6.50096 6.63789 6.69538 6.80968 6.94598 6.99076 7.05288 7.14276 7.43852 7.73389 7.82807 8.17074 8.48975 8.79125 9.24673 9.88046 10.45007 11.33661 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.001830 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.947469 B =15298.637594 C =16124.155507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.393 3.607 3 O -0.454 6.454 4 C -0.176 4.176 5 C -0.068 4.068 6 C -0.135 4.135 7 C -0.067 4.067 8 C -0.116 4.116 9 C 0.181 3.819 10 N -0.750 5.750 11 C 0.702 3.298 12 O -0.588 6.588 13 N -0.739 5.739 14 C 0.169 3.831 15 C -0.147 4.147 16 C 0.173 3.827 17 N -0.592 5.592 18 C -0.255 4.255 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.149 3.851 27 C -0.138 4.138 28 C -0.041 4.041 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.134 0.866 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.394 0.606 38 H 0.390 0.610 39 H 0.081 0.919 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.088 0.912 43 H 0.021 0.979 44 H 0.255 0.745 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.054 0.946 48 H 0.062 0.938 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.527 -7.842 -7.947 32.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.271 3.729 3 O -0.329 6.329 4 C -0.177 4.177 5 C -0.087 4.087 6 C -0.153 4.153 7 C -0.086 4.086 8 C -0.117 4.117 9 C 0.057 3.943 10 N -0.407 5.407 11 C 0.402 3.598 12 O -0.465 6.465 13 N -0.392 5.392 14 C 0.065 3.935 15 C -0.187 4.187 16 C 0.047 3.953 17 N -0.315 5.315 18 C -0.384 4.384 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.211 1.211 26 C 0.021 3.979 27 C -0.178 4.178 28 C -0.060 4.060 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -29.272 -7.175 -8.886 31.421 hybrid contribution -0.387 0.509 1.296 1.445 sum -29.659 -6.665 -7.589 31.331 Atomic orbital electron populations 1.22239 0.93622 1.04995 1.04884 1.22533 0.91742 0.87584 0.71076 1.90578 1.72088 1.34295 1.35986 1.20550 0.94447 0.94971 1.07688 1.21528 1.00216 0.91474 0.95435 1.21168 0.94195 0.98323 1.01574 1.21440 0.94363 0.97945 0.94814 1.19948 0.95623 0.93144 1.02944 1.19970 0.87655 1.03477 0.83233 1.45161 1.05703 1.81777 1.08016 1.15990 0.81972 0.77866 0.84000 1.90941 1.54654 1.57622 1.43309 1.45525 1.09152 1.79279 1.05276 1.20914 0.77290 0.98025 0.97268 1.22585 1.00881 0.94991 1.00281 1.20756 0.88128 0.99370 0.87034 1.44090 1.59733 1.10978 1.16687 1.19119 1.12181 1.19694 0.87456 0.91733 1.25067 0.96538 1.01644 0.96382 1.70026 1.30659 1.36039 1.17775 0.86370 0.78333 0.80851 0.81193 1.20896 1.21650 1.21075 1.20837 0.89607 0.88387 0.99029 1.22336 1.00707 0.99154 0.95607 1.21435 0.93086 0.98500 0.92932 0.88341 0.89287 0.89506 0.84834 0.85049 0.85097 0.90568 0.90539 0.77263 0.77750 0.90090 0.92855 0.92782 0.89348 0.96113 0.93527 0.96192 0.92367 0.92694 0.91941 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.77 9.75 36.01 0.35 -0.42 16 2 C 0.39 3.09 7.23 -30.68 -0.22 2.87 16 3 O -0.45 -5.45 17.09 5.58 0.10 -5.35 16 4 C -0.18 -1.29 5.87 -105.06 -0.62 -1.90 16 5 C -0.07 -0.33 9.36 -39.11 -0.37 -0.70 16 6 C -0.13 -0.65 10.03 -39.65 -0.40 -1.05 16 7 C -0.07 -0.41 9.69 -39.46 -0.38 -0.79 16 8 C -0.12 -0.91 5.24 -104.69 -0.55 -1.46 16 9 C 0.18 1.79 5.79 -5.19 -0.03 1.76 16 10 N -0.75 -8.16 5.55 -66.41 -0.37 -8.53 16 11 C 0.70 10.76 8.53 -86.92 -0.74 10.02 16 12 O -0.59 -11.71 16.01 5.29 0.08 -11.62 16 13 N -0.74 -10.63 5.08 -58.62 -0.30 -10.93 16 14 C 0.17 3.01 2.41 -67.87 -0.16 2.85 16 15 C -0.15 -3.03 5.66 -26.59 -0.15 -3.18 16 16 C 0.17 4.32 5.30 -3.71 -0.02 4.30 16 17 N -0.59 -14.98 3.00 -172.31 -0.52 -15.50 16 18 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 19 H 0.06 1.73 7.88 -52.49 -0.41 1.32 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.67 11.20 55.49 0.62 -26.05 16 22 Si 0.90 21.92 29.59 -169.99 -5.03 16.89 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.09 6.52 -3.71 -0.02 3.07 16 27 C -0.14 -2.32 5.55 -26.61 -0.15 -2.46 16 28 C -0.04 -0.35 9.25 -39.11 -0.36 -0.71 16 29 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 30 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.14 6.47 -51.93 -0.34 -0.20 16 32 H 0.13 0.27 6.36 -52.49 -0.33 -0.06 16 33 H 0.13 0.34 8.06 -52.49 -0.42 -0.09 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.22 16 35 H 0.08 0.85 8.08 -51.93 -0.42 0.43 16 36 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.39 3.31 8.48 -40.82 -0.35 2.96 16 38 H 0.39 4.39 8.62 -40.82 -0.35 4.04 16 39 H 0.08 1.64 7.58 -51.93 -0.39 1.24 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 46 H 0.06 1.16 7.93 -51.92 -0.41 0.75 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.14 1.33 7.65 -52.48 -0.40 0.93 16 LS Contribution 402.27 15.07 6.06 6.06 Total: -1.00 -35.35 402.27 -10.90 -46.26 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.51 Total: 3.77 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -4.05 Total: 5.00 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.56 Total: -61.01 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: 0.18 Total: -16.97 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.03 Total: 16.89 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.35 -10.90 -46.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917312892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.279 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds