Wall clock time and date at job start Wed Apr 1 2020 05:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21248 * 120.00204 * 2 1 4 4 C 1.47175 * 119.99785 * 179.97438 * 2 1 3 5 5 C 1.39873 * 120.17072 * 359.97438 * 4 2 1 6 6 C 1.37859 * 119.82531 * 180.02562 * 5 4 2 7 7 C 1.38429 * 120.17224 * 359.74612 * 6 5 4 8 8 C 1.38383 * 120.34532 * 0.50754 * 7 6 5 9 9 C 1.50702 * 119.91149 * 179.76894 * 8 7 6 10 10 N 1.46505 * 109.47123 * 269.72213 * 9 8 7 11 11 C 1.34773 * 120.00225 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99684 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00300 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00360 * 180.02562 * 13 11 10 15 15 C 1.53071 * 109.44009 * 84.79625 * 14 13 11 16 16 C 1.53201 * 109.29371 * 181.23934 * 15 14 13 17 17 N 1.46928 * 108.89275 * 305.57634 * 16 15 14 18 18 C 1.36934 * 120.63265 * 233.51651 * 17 16 15 19 19 H 1.07997 * 119.99862 * 151.82898 * 18 17 16 20 20 C 1.38806 * 120.00015 * 331.83027 * 18 17 16 21 21 N 1.31624 * 120.00191 * 343.08772 * 20 18 17 22 22 Si 1.86800 * 120.00146 * 163.08448 * 20 18 17 23 23 H 1.48503 * 109.47142 * 60.00161 * 22 20 18 24 24 H 1.48498 * 109.47084 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47267 * 300.00095 * 22 20 18 26 26 C 1.46932 * 118.73342 * 53.53882 * 17 16 15 27 27 C 1.53045 * 109.46092 * 205.00269 * 14 13 11 28 28 C 1.37902 * 120.17454 * 359.49036 * 8 7 6 29 29 H 1.08997 * 109.47033 * 270.00295 * 1 2 3 30 30 H 1.08997 * 109.46597 * 30.00001 * 1 2 3 31 31 H 1.08993 * 109.47009 * 149.99943 * 1 2 3 32 32 H 1.08001 * 120.08341 * 359.97438 * 5 4 2 33 33 H 1.08002 * 119.91648 * 180.02562 * 6 5 4 34 34 H 1.08002 * 119.82910 * 180.27876 * 7 6 5 35 35 H 1.09000 * 109.47181 * 149.72915 * 9 8 7 36 36 H 1.08997 * 109.47315 * 29.72194 * 9 8 7 37 37 H 0.97005 * 119.99867 * 0.02562 * 10 9 8 38 38 H 0.97005 * 119.99791 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.45866 * 324.97703 * 14 13 11 40 40 H 1.09002 * 109.39343 * 61.36176 * 15 14 13 41 41 H 1.09003 * 109.62467 * 301.25403 * 15 14 13 42 42 H 1.09000 * 109.58250 * 185.72113 * 16 15 14 43 43 H 1.08995 * 109.58477 * 65.43833 * 16 15 14 44 44 H 0.96995 * 120.00379 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.59017 * 66.18099 * 26 17 16 46 46 H 1.09009 * 109.58200 * 186.46074 * 26 17 16 47 47 H 1.09002 * 109.49555 * 58.67538 * 27 14 13 48 48 H 1.08992 * 109.52043 * 298.59539 * 27 14 13 49 49 H 1.08004 * 120.09136 * 180.22747 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0500 0.0000 4 6 2.2428 -1.2746 0.0006 5 6 1.5471 -2.4880 0.0017 6 6 2.2435 -3.6777 0.0027 7 6 3.6278 -3.6736 -0.0026 8 6 4.3233 -2.4773 0.0016 9 6 5.8303 -2.4843 0.0010 10 7 6.3192 -2.4849 1.3821 11 6 7.6443 -2.4913 1.6279 12 8 8.4341 -2.4960 0.7034 13 7 8.0941 -2.4924 2.8984 14 6 9.5345 -2.4987 3.1656 15 6 10.0657 -1.0637 3.1288 16 6 11.5773 -1.0769 3.3779 17 7 11.8463 -1.7908 4.6336 18 6 12.5890 -1.2053 5.6238 19 1 12.4246 -1.4788 6.6556 20 6 13.5532 -0.2601 5.3015 21 7 13.9912 -0.1624 4.0641 22 14 14.2290 0.8731 6.6237 23 1 14.8650 0.0622 7.6930 24 1 15.2381 1.7842 6.0264 25 1 13.1209 1.6742 7.2029 26 6 11.3035 -3.1453 4.8063 27 6 9.7945 -3.1088 4.5449 28 6 3.6412 -1.2788 0.0005 29 1 -0.3633 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5138 32 1 0.4670 -2.4927 0.0025 33 1 1.7077 -4.6155 0.0031 34 1 4.1677 -4.6089 -0.0063 35 1 6.1976 -1.5965 -0.5139 36 1 6.1894 -3.3765 -0.5119 37 1 5.6891 -2.4815 2.1196 38 1 7.4640 -2.4890 3.6359 39 1 10.0423 -3.0914 2.4047 40 1 9.5744 -0.4758 3.9041 41 1 9.8617 -0.6227 2.1530 42 1 11.9441 -0.0533 3.4537 43 1 12.0789 -1.5847 2.5541 44 1 14.6652 0.4978 3.8389 45 1 11.7807 -3.8232 4.0988 46 1 11.4920 -3.4873 5.8241 47 1 9.3954 -4.1227 4.5753 48 1 9.3073 -2.5030 5.3088 49 1 4.1854 -0.3460 0.0000 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000917312892.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:22 Heat of formation + Delta-G solvation = -46.982939 kcal Electronic energy + Delta-G solvation = -29069.941532 eV Core-core repulsion = 24996.368897 eV Total energy + Delta-G solvation = -4073.572635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.38316 -40.93814 -39.50118 -38.98878 -36.24952 -35.80384 -33.99071 -33.06961 -32.21584 -31.68901 -31.12189 -30.33216 -27.43008 -26.42651 -24.72787 -23.91968 -23.71844 -22.75525 -21.86794 -21.07014 -20.56863 -19.38361 -18.70821 -18.05752 -17.43876 -16.98643 -16.79861 -16.62112 -16.28862 -16.05854 -15.88639 -15.63634 -15.36159 -15.29812 -15.27150 -14.80460 -14.74304 -14.43763 -14.11405 -14.02430 -13.64572 -13.52266 -13.19005 -13.05345 -12.99946 -12.94934 -12.67687 -12.63484 -12.56502 -12.13182 -12.08487 -12.04332 -11.86441 -11.54176 -11.47797 -11.24595 -10.81271 -10.57793 -10.35233 -9.99969 -9.94220 -9.76170 -8.71141 -7.87138 -5.33720 -0.36823 0.22681 1.35812 1.46880 1.50095 1.56637 1.78027 2.15779 2.51609 2.77489 3.04626 3.27374 3.37783 3.54891 3.67519 3.87326 3.88622 4.04176 4.08748 4.10248 4.24981 4.30465 4.35009 4.45096 4.47792 4.61184 4.67148 4.67522 4.70996 4.80348 4.87667 4.89931 4.97159 5.05029 5.08791 5.13130 5.13860 5.30404 5.32341 5.39463 5.41713 5.46336 5.49920 5.60123 5.63912 5.69302 5.87177 6.01542 6.38665 6.51638 7.10805 7.13390 7.59526 7.84471 8.37531 9.19807 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017968 B = 0.001830 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.947469 B =15298.637594 C =16124.155507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.390 3.610 3 O -0.512 6.512 4 C -0.192 4.192 5 C -0.051 4.051 6 C -0.128 4.128 7 C -0.064 4.064 8 C -0.122 4.122 9 C 0.182 3.818 10 N -0.729 5.729 11 C 0.699 3.301 12 O -0.637 6.637 13 N -0.725 5.725 14 C 0.181 3.819 15 C -0.131 4.131 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.262 4.262 19 H 0.075 0.925 20 C -0.056 4.056 21 N -0.939 5.939 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.298 1.298 25 H -0.277 1.277 26 C 0.141 3.859 27 C -0.120 4.120 28 C -0.061 4.061 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.172 0.828 33 H 0.166 0.834 34 H 0.146 0.854 35 H 0.054 0.946 36 H 0.077 0.923 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.053 0.947 43 H -0.011 1.011 44 H 0.249 0.751 45 H 0.012 0.988 46 H 0.069 0.931 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.682 -10.195 -6.331 36.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C 0.272 3.728 3 O -0.391 6.391 4 C -0.193 4.193 5 C -0.069 4.069 6 C -0.146 4.146 7 C -0.083 4.083 8 C -0.123 4.123 9 C 0.059 3.941 10 N -0.385 5.385 11 C 0.399 3.601 12 O -0.518 6.518 13 N -0.379 5.379 14 C 0.076 3.924 15 C -0.172 4.172 16 C 0.056 3.944 17 N -0.332 5.332 18 C -0.392 4.392 19 H 0.092 0.908 20 C -0.251 4.251 21 N -0.585 5.585 22 Si 0.798 3.202 23 H -0.197 1.197 24 H -0.225 1.225 25 H -0.203 1.203 26 C 0.015 3.985 27 C -0.159 4.159 28 C -0.080 4.080 29 H 0.135 0.865 30 H 0.104 0.896 31 H 0.136 0.864 32 H 0.189 0.811 33 H 0.183 0.817 34 H 0.163 0.837 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.246 0.754 38 H 0.247 0.753 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.007 0.993 44 H 0.058 0.942 45 H 0.030 0.970 46 H 0.088 0.912 47 H 0.111 0.889 48 H 0.093 0.907 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -33.531 -9.574 -7.223 35.611 hybrid contribution 0.834 1.147 0.737 1.598 sum -32.697 -8.427 -6.486 34.382 Atomic orbital electron populations 1.22288 0.90072 1.06401 1.06358 1.23277 0.93727 0.86915 0.68894 1.90563 1.73489 1.36076 1.39017 1.20684 0.93851 0.96081 1.08708 1.21937 1.02026 0.90135 0.92823 1.21575 0.93541 0.99658 0.99803 1.21661 0.95362 0.97461 0.93787 1.19669 0.93952 0.93800 1.04862 1.19955 0.89462 1.02433 0.82288 1.44985 1.04304 1.80059 1.09185 1.16172 0.82900 0.77536 0.83533 1.90917 1.56331 1.59766 1.44834 1.45102 1.08003 1.79002 1.05818 1.20513 0.78970 0.95395 0.97548 1.22336 0.97841 0.97383 0.99606 1.20452 0.90596 0.96963 0.86374 1.44333 1.59935 1.12911 1.16050 1.19539 1.11715 1.19512 0.88398 0.90768 1.25902 0.97402 1.03428 0.98384 1.70206 1.31570 1.36787 1.19929 0.85300 0.77498 0.78722 0.78680 1.19676 1.22456 1.20337 1.21060 0.92056 0.85865 0.99514 1.22126 0.97625 1.01534 0.94616 1.21335 0.94187 0.97795 0.94686 0.86527 0.89589 0.86409 0.81085 0.81693 0.83656 0.92767 0.90493 0.75397 0.75321 0.92562 0.92280 0.94022 0.92827 0.99274 0.94211 0.96960 0.91223 0.88857 0.90692 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 9.75 71.24 0.69 -0.28 16 2 C 0.39 5.93 7.23 28.04 0.20 6.13 16 3 O -0.51 -13.08 17.09 -2.93 -0.05 -13.13 16 4 C -0.19 -2.57 5.87 -20.15 -0.12 -2.69 16 5 C -0.05 -0.29 9.36 22.58 0.21 -0.08 16 6 C -0.13 -0.66 10.03 22.23 0.22 -0.44 16 7 C -0.06 -0.60 9.69 22.35 0.22 -0.38 16 8 C -0.12 -1.83 5.24 -19.91 -0.10 -1.94 16 9 C 0.18 3.69 5.79 85.63 0.50 4.18 16 10 N -0.73 -15.41 5.55 -482.30 -2.68 -18.09 16 11 C 0.70 21.25 8.53 179.06 1.53 22.78 16 12 O -0.64 -26.16 16.01 -3.99 -0.06 -26.22 16 13 N -0.72 -19.76 5.08 -457.64 -2.33 -22.09 16 14 C 0.18 6.36 2.41 45.03 0.11 6.47 16 15 C -0.13 -5.54 5.66 30.69 0.17 -5.37 16 16 C 0.18 9.55 5.30 86.37 0.46 10.00 16 17 N -0.61 -31.21 3.00 -699.07 -2.09 -33.31 16 18 C -0.26 -14.50 9.58 84.03 0.81 -13.70 16 19 H 0.07 3.90 7.88 -2.91 -0.02 3.88 16 20 C -0.06 -3.21 4.92 84.86 0.42 -2.79 16 21 N -0.94 -57.87 11.20 21.65 0.24 -57.63 16 22 Si 0.97 45.71 29.59 68.60 2.03 47.74 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 C 0.14 5.72 6.52 86.36 0.56 6.29 16 27 C -0.12 -3.71 5.55 30.67 0.17 -3.54 16 28 C -0.06 -1.08 9.25 22.58 0.21 -0.87 16 29 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.12 -0.17 6.47 -2.39 -0.02 -0.18 16 32 H 0.17 -0.33 6.36 -2.91 -0.02 -0.35 16 33 H 0.17 -0.16 8.06 -2.91 -0.02 -0.19 16 34 H 0.15 0.95 8.06 -2.91 -0.02 0.92 16 35 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 36 H 0.08 1.56 8.08 -2.39 -0.02 1.54 16 37 H 0.41 6.17 8.48 -92.70 -0.79 5.38 16 38 H 0.41 8.00 8.62 -92.70 -0.80 7.20 16 39 H 0.06 2.30 7.58 -2.39 -0.02 2.29 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.05 3.15 6.06 -2.39 -0.01 3.13 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.07 2.65 7.93 -2.38 -0.02 2.63 16 47 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.11 2.45 7.65 -2.91 -0.02 2.43 16 Total: -1.00 -83.25 402.27 0.71 -82.54 By element: Atomic # 1 Polarization: 17.01 SS G_CDS: -0.61 Total: 16.41 kcal Atomic # 6 Polarization: 17.52 SS G_CDS: 6.25 Total: 23.77 kcal Atomic # 7 Polarization: -124.26 SS G_CDS: -6.85 Total: -131.11 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.11 Total: -39.35 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -83.25 0.71 -82.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000917312892.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.559 kcal (2) G-P(sol) polarization free energy of solvation -83.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds