Wall clock time and date at job start Wed Apr 1 2020 03:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46993 * 2 1 4 4 C 1.34784 * 119.99971 * 269.99943 * 3 2 1 5 5 O 1.21286 * 120.00012 * 184.86057 * 4 3 2 6 6 C 1.50703 * 120.00044 * 4.86561 * 4 3 2 7 7 N 1.46495 * 109.47349 * 179.97438 * 6 4 3 8 8 C 1.34772 * 120.00240 * 179.97438 * 7 6 4 9 9 O 1.21596 * 119.99999 * 5.02342 * 8 7 6 10 10 N 1.34775 * 120.00349 * 185.02013 * 8 7 6 11 11 C 1.46505 * 120.00064 * 174.98472 * 10 8 7 12 12 C 1.53001 * 109.46893 * 185.19103 * 11 10 8 13 13 C 1.50700 * 115.54967 * 65.45531 * 12 11 10 14 14 H 1.08009 * 120.00157 * 271.59268 * 13 12 11 15 15 C 1.37879 * 120.00306 * 91.58926 * 13 12 11 16 16 N 1.31511 * 119.99841 * 182.24960 * 15 13 12 17 17 Si 1.86797 * 119.99697 * 2.25597 * 15 13 12 18 18 H 1.48502 * 109.47213 * 93.37357 * 17 15 13 19 19 H 1.48495 * 109.46931 * 213.36870 * 17 15 13 20 20 H 1.48496 * 109.47380 * 333.37314 * 17 15 13 21 21 C 1.52999 * 117.50030 * 279.78605 * 12 11 10 22 22 C 1.52993 * 117.49767 * 211.12092 * 12 11 10 23 23 C 1.39922 * 120.00375 * 90.00076 * 3 2 1 24 24 C 1.38867 * 120.07362 * 237.93435 * 23 3 2 25 25 C 1.38110 * 119.92866 * 179.69969 * 24 23 3 26 26 C 1.38281 * 120.06841 * 0.57172 * 25 24 23 27 27 C 1.38275 * 120.14429 * 359.72577 * 26 25 24 28 28 C 1.38108 * 120.07068 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47294 * 59.99665 * 1 2 3 31 31 H 1.09003 * 109.46655 * 300.00129 * 1 2 3 32 32 H 1.08993 * 109.47294 * 120.00335 * 2 1 3 33 33 H 1.09001 * 109.46973 * 240.00303 * 2 1 3 34 34 H 1.08999 * 109.46854 * 300.00248 * 6 4 3 35 35 H 1.09007 * 109.47127 * 59.99423 * 6 4 3 36 36 H 0.96999 * 119.99742 * 0.02562 * 7 6 4 37 37 H 0.97000 * 119.99691 * 354.98536 * 10 8 7 38 38 H 1.08999 * 109.47124 * 305.18945 * 11 10 8 39 39 H 1.08998 * 109.47001 * 65.19722 * 11 10 8 40 40 H 0.97008 * 119.99322 * 180.02562 * 16 15 13 41 41 H 1.08996 * 117.50044 * 359.97438 * 21 12 11 42 42 H 1.08995 * 117.50182 * 145.02174 * 21 12 11 43 43 H 1.09008 * 117.50157 * 214.97550 * 22 12 11 44 44 H 1.09000 * 117.50106 * 359.97438 * 22 12 11 45 45 H 1.07998 * 120.03404 * 359.97403 * 24 23 3 46 46 H 1.07997 * 119.96723 * 180.29663 * 25 24 23 47 47 H 1.08010 * 119.92729 * 179.70063 * 26 25 24 48 48 H 1.08004 * 119.96946 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.04159 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 -1.1673 5 8 2.7301 3.1273 -1.1692 6 6 1.8888 1.3469 -2.4700 7 7 2.2267 2.2363 -3.5840 8 6 1.9965 1.8445 -4.8528 9 8 1.4254 0.7933 -5.0704 10 7 2.3992 2.6179 -5.8805 11 6 2.2483 2.1426 -7.2581 12 6 2.8954 3.1440 -8.2169 13 6 4.3905 3.2881 -8.0944 14 1 4.8092 4.0020 -7.4005 15 6 5.2239 2.5086 -8.8682 16 7 6.5283 2.6028 -8.7297 17 14 4.5003 1.3190 -10.1134 18 1 4.4158 1.9814 -11.4398 19 1 5.3689 0.1188 -10.2140 20 1 3.1410 0.9111 -9.6763 21 6 2.0925 4.3948 -8.5797 22 6 2.2844 3.2816 -9.6127 23 6 2.2516 2.0409 1.2117 24 6 1.5916 3.2293 1.4953 25 6 1.8194 3.8747 2.6949 26 6 2.7125 3.3449 3.6081 27 6 3.3759 2.1649 3.3261 28 6 3.1479 1.5114 2.1309 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.4491 0.4167 -2.5644 35 1 0.8205 1.1310 -2.4890 36 1 2.6168 3.1068 -3.4084 37 1 2.7889 3.4893 -5.7081 38 1 2.7345 1.1727 -7.3631 39 1 1.1888 2.0455 -7.4949 40 1 7.1147 2.0546 -9.2745 41 1 1.1031 4.5041 -8.1357 42 1 2.6456 5.3218 -8.7302 43 1 2.9638 3.4769 -10.4426 44 1 1.4217 2.6584 -9.8482 45 1 0.8976 3.6461 0.7805 46 1 1.3028 4.7965 2.9182 47 1 2.8925 3.8541 4.5434 48 1 4.0732 1.7538 4.0411 49 1 3.6667 0.5900 1.9110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922307509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:31 Heat of formation + Delta-G solvation = -0.774464 kcal Electronic energy + Delta-G solvation = -29603.162571 eV Core-core repulsion = 25531.593686 eV Total energy + Delta-G solvation = -4071.568885 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.07533 -39.56062 -38.67564 -37.14217 -36.39284 -34.25646 -33.41406 -32.09691 -31.78644 -31.26309 -29.86610 -28.01812 -26.20124 -24.93332 -24.12946 -22.97116 -22.46833 -21.79414 -20.45364 -19.89489 -19.29062 -18.23683 -17.82103 -16.77619 -16.68143 -16.36319 -16.12674 -15.69350 -15.34685 -14.95787 -14.81399 -14.47816 -14.31125 -14.13852 -14.02501 -13.75226 -13.48758 -13.27441 -13.16641 -13.01363 -12.84061 -12.65694 -12.43311 -12.34205 -11.93496 -11.82729 -11.56879 -11.52278 -11.14735 -10.90277 -10.44345 -10.27637 -10.16109 -9.92727 -9.88059 -9.55623 -9.26306 -9.15790 -9.02478 -8.63062 -8.61294 -8.55207 -8.18287 -6.13243 -4.17616 0.92161 1.07474 2.21559 2.32490 3.12228 3.29538 3.40631 3.42674 3.46623 3.64247 4.14371 4.41871 4.43582 4.57676 4.62365 4.63102 4.73634 4.79647 4.91792 5.01125 5.07028 5.12853 5.16237 5.18751 5.21852 5.25609 5.39039 5.44266 5.67428 5.70298 5.78083 5.98731 6.04185 6.06394 6.07629 6.19004 6.23403 6.27850 6.42936 6.46032 6.50954 6.69854 6.70967 6.87046 7.00247 7.10411 7.16720 7.40441 7.70003 7.73207 8.43706 8.50903 8.87273 9.03158 9.49525 10.98151 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002118 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.282614 B =13215.240411 C =13507.882434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.099 3.901 3 N -0.569 5.569 4 C 0.513 3.487 5 O -0.514 6.514 6 C 0.127 3.873 7 N -0.744 5.744 8 C 0.706 3.294 9 O -0.605 6.605 10 N -0.716 5.716 11 C 0.178 3.822 12 C -0.015 4.015 13 C -0.489 4.489 14 H 0.078 0.922 15 C 0.078 3.922 16 N -0.895 5.895 17 Si 0.882 3.118 18 H -0.280 1.280 19 H -0.296 1.296 20 H -0.255 1.255 21 C -0.180 4.180 22 C -0.192 4.192 23 C 0.147 3.853 24 C -0.108 4.108 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.108 4.108 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.407 0.593 37 H 0.401 0.599 38 H 0.063 0.937 39 H 0.041 0.959 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.076 0.924 45 H 0.122 0.878 46 H 0.126 0.874 47 H 0.124 0.876 48 H 0.126 0.874 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.683 -3.195 24.074 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 N -0.299 5.299 4 C 0.302 3.698 5 O -0.388 6.388 6 C -0.001 4.001 7 N -0.404 5.404 8 C 0.406 3.594 9 O -0.485 6.485 10 N -0.369 5.369 11 C 0.054 3.946 12 C -0.017 4.017 13 C -0.526 4.526 14 H 0.096 0.904 15 C -0.125 4.125 16 N -0.532 5.532 17 Si 0.710 3.290 18 H -0.207 1.207 19 H -0.223 1.223 20 H -0.179 1.179 21 C -0.218 4.218 22 C -0.230 4.230 23 C 0.057 3.943 24 C -0.128 4.128 25 C -0.125 4.125 26 C -0.144 4.144 27 C -0.126 4.126 28 C -0.147 4.147 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.244 0.756 37 H 0.235 0.765 38 H 0.081 0.919 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.094 0.906 45 H 0.140 0.860 46 H 0.144 0.856 47 H 0.142 0.858 48 H 0.144 0.856 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -11.724 -3.663 23.713 26.706 hybrid contribution 0.192 0.051 -0.580 0.613 sum -11.532 -3.612 23.133 26.100 Atomic orbital electron populations 1.22230 0.94989 1.03045 1.02940 1.21831 0.95248 0.80810 1.04335 1.45528 1.65791 1.14837 1.03771 1.20850 0.77538 0.86164 0.85286 1.90747 1.41803 1.19544 1.86714 1.20829 1.02654 0.93738 0.82885 1.44744 1.70216 1.21754 1.03687 1.15845 0.79642 0.83818 0.80125 1.90868 1.48399 1.24904 1.84347 1.44958 1.65431 1.21112 1.05375 1.20971 0.97457 0.97766 0.78439 1.19652 0.95354 0.94364 0.92307 1.20189 0.85713 1.22679 1.24047 0.90378 1.25003 0.94565 0.96189 0.96774 1.69897 1.02722 1.40367 1.40235 0.86820 0.79922 0.80562 0.81704 1.20657 1.22275 1.17941 1.22897 1.00047 0.94280 1.04542 1.22926 1.02398 1.03324 0.94306 1.17590 0.96419 0.94061 0.86253 1.21160 0.99306 0.95274 0.97058 1.21049 0.98325 0.99704 0.93444 1.21190 0.97216 0.96251 0.99728 1.21009 0.99606 0.95493 0.96542 1.21134 0.97280 1.01467 0.94785 0.90737 0.91847 0.92082 0.89549 0.89114 0.88574 0.88381 0.75606 0.76497 0.91874 0.94034 0.92530 0.90852 0.89398 0.89257 0.90566 0.85966 0.85634 0.85844 0.85611 0.85703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.02 10.24 37.16 0.38 -0.64 16 2 C 0.10 0.64 5.82 -4.04 -0.02 0.61 16 3 N -0.57 -5.45 2.57 -113.45 -0.29 -5.75 16 4 C 0.51 6.24 7.54 -10.98 -0.08 6.16 16 5 O -0.51 -7.95 15.07 5.55 0.08 -7.87 16 6 C 0.13 1.55 4.83 -5.19 -0.03 1.53 16 7 N -0.74 -11.29 5.53 -66.41 -0.37 -11.66 16 8 C 0.71 13.21 8.55 -86.92 -0.74 12.46 16 9 O -0.61 -12.95 16.36 5.28 0.09 -12.86 16 10 N -0.72 -13.76 5.47 -65.22 -0.36 -14.11 16 11 C 0.18 3.79 5.32 -4.04 -0.02 3.77 16 12 C -0.02 -0.34 0.84 -155.66 -0.13 -0.47 16 13 C -0.49 -13.05 9.36 -34.44 -0.32 -13.37 16 14 H 0.08 2.25 8.06 -52.48 -0.42 1.83 16 15 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 16 N -0.90 -26.86 13.96 55.43 0.77 -26.09 16 17 Si 0.88 21.58 24.83 -169.99 -4.22 17.36 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.30 -7.37 7.11 56.52 0.40 -6.97 16 20 H -0.26 -5.96 6.12 56.52 0.35 -5.61 16 21 C -0.18 -3.49 9.96 -26.69 -0.27 -3.76 16 22 C -0.19 -3.97 7.11 -26.69 -0.19 -4.16 16 23 C 0.15 1.49 5.12 -83.69 -0.43 1.06 16 24 C -0.11 -1.09 9.00 -39.40 -0.35 -1.45 16 25 C -0.11 -0.90 10.04 -39.61 -0.40 -1.29 16 26 C -0.13 -0.94 10.04 -39.55 -0.40 -1.34 16 27 C -0.11 -0.81 10.04 -39.62 -0.40 -1.21 16 28 C -0.13 -1.10 9.34 -39.39 -0.37 -1.46 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.43 6.95 -51.93 -0.36 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.43 7.45 -51.93 -0.39 0.04 16 33 H 0.09 0.52 6.47 -51.93 -0.34 0.18 16 34 H 0.10 1.10 7.25 -51.93 -0.38 0.73 16 35 H 0.10 1.08 6.95 -51.92 -0.36 0.72 16 36 H 0.41 6.00 7.46 -40.82 -0.30 5.70 16 37 H 0.40 7.22 8.48 -40.82 -0.35 6.88 16 38 H 0.06 1.49 7.87 -51.93 -0.41 1.08 16 39 H 0.04 0.84 8.09 -51.93 -0.42 0.42 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.09 1.94 6.54 -51.92 -0.34 1.60 16 44 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 45 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 46 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 47 H 0.12 0.65 8.06 -52.48 -0.42 0.22 16 48 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 49 H 0.13 0.89 7.90 -52.49 -0.41 0.48 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -34.11 403.45 -9.55 -43.66 By element: Atomic # 1 Polarization: 20.19 SS G_CDS: -7.47 Total: 12.71 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -3.87 Total: -1.49 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.24 Total: -57.60 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: 0.17 Total: -20.73 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.22 Total: 17.36 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.11 -9.55 -43.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922307509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.890 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds