Wall clock time and date at job start Wed Apr 1 2020 03:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46499 * 109.46993 * 2 1 4 4 C 1.34784 * 119.99971 * 269.99943 * 3 2 1 5 5 O 1.21286 * 120.00012 * 184.86057 * 4 3 2 6 6 C 1.50703 * 120.00044 * 4.86561 * 4 3 2 7 7 N 1.46495 * 109.47349 * 179.97438 * 6 4 3 8 8 C 1.34772 * 120.00240 * 179.97438 * 7 6 4 9 9 O 1.21596 * 119.99999 * 5.02342 * 8 7 6 10 10 N 1.34775 * 120.00349 * 185.02013 * 8 7 6 11 11 C 1.46505 * 120.00064 * 174.98472 * 10 8 7 12 12 C 1.53001 * 109.46893 * 185.19103 * 11 10 8 13 13 C 1.50700 * 115.54967 * 65.45531 * 12 11 10 14 14 H 1.08009 * 120.00157 * 271.59268 * 13 12 11 15 15 C 1.37879 * 120.00306 * 91.58926 * 13 12 11 16 16 N 1.31511 * 119.99841 * 182.24960 * 15 13 12 17 17 Si 1.86797 * 119.99697 * 2.25597 * 15 13 12 18 18 H 1.48502 * 109.47213 * 93.37357 * 17 15 13 19 19 H 1.48495 * 109.46931 * 213.36870 * 17 15 13 20 20 H 1.48496 * 109.47380 * 333.37314 * 17 15 13 21 21 C 1.52999 * 117.50030 * 279.78605 * 12 11 10 22 22 C 1.52993 * 117.49767 * 211.12092 * 12 11 10 23 23 C 1.39922 * 120.00375 * 90.00076 * 3 2 1 24 24 C 1.38867 * 120.07362 * 237.93435 * 23 3 2 25 25 C 1.38110 * 119.92866 * 179.69969 * 24 23 3 26 26 C 1.38281 * 120.06841 * 0.57172 * 25 24 23 27 27 C 1.38275 * 120.14429 * 359.72577 * 26 25 24 28 28 C 1.38108 * 120.07068 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.46774 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47294 * 59.99665 * 1 2 3 31 31 H 1.09003 * 109.46655 * 300.00129 * 1 2 3 32 32 H 1.08993 * 109.47294 * 120.00335 * 2 1 3 33 33 H 1.09001 * 109.46973 * 240.00303 * 2 1 3 34 34 H 1.08999 * 109.46854 * 300.00248 * 6 4 3 35 35 H 1.09007 * 109.47127 * 59.99423 * 6 4 3 36 36 H 0.96999 * 119.99742 * 0.02562 * 7 6 4 37 37 H 0.97000 * 119.99691 * 354.98536 * 10 8 7 38 38 H 1.08999 * 109.47124 * 305.18945 * 11 10 8 39 39 H 1.08998 * 109.47001 * 65.19722 * 11 10 8 40 40 H 0.97008 * 119.99322 * 180.02562 * 16 15 13 41 41 H 1.08996 * 117.50044 * 359.97438 * 21 12 11 42 42 H 1.08995 * 117.50182 * 145.02174 * 21 12 11 43 43 H 1.09008 * 117.50157 * 214.97550 * 22 12 11 44 44 H 1.09000 * 117.50106 * 359.97438 * 22 12 11 45 45 H 1.07998 * 120.03404 * 359.97403 * 24 23 3 46 46 H 1.07997 * 119.96723 * 180.29663 * 25 24 23 47 47 H 1.08010 * 119.92729 * 179.70063 * 26 25 24 48 48 H 1.08004 * 119.96946 * 179.97438 * 27 26 25 49 49 H 1.08002 * 120.04159 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2430 2.0166 -1.1673 5 8 2.7301 3.1273 -1.1692 6 6 1.8888 1.3469 -2.4700 7 7 2.2267 2.2363 -3.5840 8 6 1.9965 1.8445 -4.8528 9 8 1.4254 0.7933 -5.0704 10 7 2.3992 2.6179 -5.8805 11 6 2.2483 2.1426 -7.2581 12 6 2.8954 3.1440 -8.2169 13 6 4.3905 3.2881 -8.0944 14 1 4.8092 4.0020 -7.4005 15 6 5.2239 2.5086 -8.8682 16 7 6.5283 2.6028 -8.7297 17 14 4.5003 1.3190 -10.1134 18 1 4.4158 1.9814 -11.4398 19 1 5.3689 0.1188 -10.2140 20 1 3.1410 0.9111 -9.6763 21 6 2.0925 4.3948 -8.5797 22 6 2.2844 3.2816 -9.6127 23 6 2.2516 2.0409 1.2117 24 6 1.5916 3.2293 1.4953 25 6 1.8194 3.8747 2.6949 26 6 2.7125 3.3449 3.6081 27 6 3.3759 2.1649 3.3261 28 6 3.1479 1.5114 2.1309 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 2.4491 0.4167 -2.5644 35 1 0.8205 1.1310 -2.4890 36 1 2.6168 3.1068 -3.4084 37 1 2.7889 3.4893 -5.7081 38 1 2.7345 1.1727 -7.3631 39 1 1.1888 2.0455 -7.4949 40 1 7.1147 2.0546 -9.2745 41 1 1.1031 4.5041 -8.1357 42 1 2.6456 5.3218 -8.7302 43 1 2.9638 3.4769 -10.4426 44 1 1.4217 2.6584 -9.8482 45 1 0.8976 3.6461 0.7805 46 1 1.3028 4.7965 2.9182 47 1 2.8925 3.8541 4.5434 48 1 4.0732 1.7538 4.0411 49 1 3.6667 0.5900 1.9110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922307509.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:29 Heat of formation + Delta-G solvation = -23.519853 kcal Electronic energy + Delta-G solvation = -29604.148885 eV Core-core repulsion = 25531.593686 eV Total energy + Delta-G solvation = -4072.555199 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.94748 -40.91136 -39.54336 -38.79702 -37.17080 -35.53178 -35.00315 -34.19261 -32.40625 -31.89326 -30.67096 -29.15457 -27.95297 -26.64120 -24.73500 -23.73547 -23.40391 -23.13304 -21.84926 -21.07580 -20.72819 -19.55138 -18.62069 -18.42460 -17.61785 -17.45096 -17.19982 -16.93256 -16.74812 -16.37267 -15.82546 -15.68468 -15.49589 -15.12252 -14.93267 -14.82671 -14.68784 -14.45194 -14.38064 -14.29356 -13.96555 -13.70596 -13.65436 -13.46210 -13.07063 -12.94149 -12.74616 -12.41710 -12.15266 -12.15116 -12.10129 -11.95980 -11.56908 -11.40899 -11.21651 -10.98820 -10.63232 -10.61102 -10.41825 -10.32783 -9.90646 -9.70294 -9.31490 -8.28813 -6.35690 0.24859 0.43132 1.29525 1.34733 1.39110 1.41672 1.53349 1.94626 2.17095 2.38160 2.77815 3.06276 3.10640 3.26162 3.48744 3.90148 3.97896 4.02922 4.04456 4.13903 4.22697 4.26297 4.29029 4.37476 4.42731 4.44505 4.51815 4.52596 4.56817 4.62398 4.80799 4.86807 4.88503 4.92433 5.06529 5.10766 5.23281 5.31805 5.32556 5.38549 5.42476 5.49933 5.57037 5.57428 5.60811 5.71027 5.98584 6.02172 6.09449 6.29063 6.72699 6.84478 7.07043 7.34512 7.55277 8.86109 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.017625 B = 0.002118 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.282614 B =13215.240411 C =13507.882434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.092 3.908 3 N -0.560 5.560 4 C 0.515 3.485 5 O -0.555 6.555 6 C 0.126 3.874 7 N -0.735 5.735 8 C 0.706 3.294 9 O -0.631 6.631 10 N -0.719 5.719 11 C 0.187 3.813 12 C -0.041 4.041 13 C -0.479 4.479 14 H 0.040 0.960 15 C 0.020 3.980 16 N -0.947 5.947 17 Si 0.937 3.063 18 H -0.269 1.269 19 H -0.305 1.305 20 H -0.234 1.234 21 C -0.155 4.155 22 C -0.189 4.189 23 C 0.124 3.876 24 C -0.130 4.130 25 C -0.115 4.115 26 C -0.126 4.126 27 C -0.109 4.109 28 C -0.134 4.134 29 H 0.092 0.908 30 H 0.052 0.948 31 H 0.055 0.945 32 H 0.106 0.894 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.409 0.591 37 H 0.405 0.595 38 H 0.036 0.964 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.104 0.896 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.103 0.897 45 H 0.108 0.892 46 H 0.141 0.859 47 H 0.149 0.851 48 H 0.152 0.848 49 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.601 -4.051 25.173 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.028 4.028 3 N -0.288 5.288 4 C 0.304 3.696 5 O -0.433 6.433 6 C -0.001 4.001 7 N -0.395 5.395 8 C 0.406 3.594 9 O -0.513 6.513 10 N -0.371 5.371 11 C 0.062 3.938 12 C -0.042 4.042 13 C -0.517 4.517 14 H 0.059 0.941 15 C -0.178 4.178 16 N -0.587 5.587 17 Si 0.762 3.238 18 H -0.194 1.194 19 H -0.233 1.233 20 H -0.156 1.156 21 C -0.192 4.192 22 C -0.227 4.227 23 C 0.034 3.966 24 C -0.150 4.150 25 C -0.133 4.133 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.154 4.154 29 H 0.111 0.889 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.124 0.876 33 H 0.118 0.882 34 H 0.125 0.875 35 H 0.131 0.869 36 H 0.246 0.754 37 H 0.240 0.760 38 H 0.055 0.945 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.122 0.878 45 H 0.127 0.873 46 H 0.159 0.841 47 H 0.167 0.833 48 H 0.170 0.830 49 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.681 -4.522 24.866 28.739 hybrid contribution 0.797 0.385 -0.739 1.153 sum -12.884 -4.137 24.127 27.663 Atomic orbital electron populations 1.22190 0.94441 1.03969 1.02129 1.22115 0.95700 0.79245 1.05752 1.45554 1.64590 1.15661 1.02986 1.20808 0.77215 0.85663 0.85927 1.90724 1.44044 1.21231 1.87270 1.21017 1.03686 0.93406 0.81983 1.44701 1.69260 1.22167 1.03324 1.15898 0.79390 0.83339 0.80811 1.90843 1.49674 1.25929 1.84893 1.44904 1.65717 1.21405 1.05117 1.20723 0.97888 0.96037 0.79107 1.19478 0.93008 0.97291 0.94435 1.20368 0.88486 1.20717 1.22116 0.94134 1.25822 0.94723 0.98222 0.99035 1.70041 1.04324 1.42250 1.42093 0.85933 0.79947 0.78094 0.79796 1.19442 1.23313 1.15650 1.22917 1.00634 0.92914 1.02727 1.23014 1.02695 1.04064 0.92908 1.17827 0.97534 0.94588 0.86652 1.21228 1.00010 0.95914 0.97800 1.21310 0.98690 1.00246 0.93055 1.21548 0.96289 0.96227 1.00360 1.21383 0.99555 0.95294 0.96507 1.21361 0.96974 1.02109 0.94927 0.88901 0.92917 0.92608 0.87619 0.88228 0.87546 0.86944 0.75353 0.76031 0.94541 0.92220 0.92723 0.87753 0.89803 0.90370 0.87847 0.87348 0.84137 0.83296 0.83041 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 71.98 0.74 -1.02 16 2 C 0.09 1.05 5.82 86.38 0.50 1.55 16 3 N -0.56 -10.45 2.57 -631.24 -1.62 -12.07 16 4 C 0.51 12.55 7.54 87.66 0.66 13.21 16 5 O -0.56 -17.63 15.07 -3.05 -0.05 -17.68 16 6 C 0.13 3.01 4.83 85.63 0.41 3.42 16 7 N -0.74 -22.17 5.53 -482.29 -2.67 -24.84 16 8 C 0.71 26.00 8.55 179.06 1.53 27.53 16 9 O -0.63 -26.42 16.36 -4.02 -0.07 -26.49 16 10 N -0.72 -27.19 5.47 -478.52 -2.62 -29.80 16 11 C 0.19 7.70 5.32 86.38 0.46 8.16 16 12 C -0.04 -1.76 0.84 -52.93 -0.04 -1.81 16 13 C -0.48 -25.97 9.36 25.60 0.24 -25.73 16 14 H 0.04 2.44 8.06 -2.91 -0.02 2.41 16 15 C 0.02 1.11 5.47 84.66 0.46 1.58 16 16 N -0.95 -58.75 13.96 21.45 0.30 -58.45 16 17 Si 0.94 44.38 24.83 68.60 1.70 46.09 16 18 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 19 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 20 H -0.23 -10.16 6.12 99.48 0.61 -9.55 16 21 C -0.15 -5.57 9.96 30.62 0.30 -5.26 16 22 C -0.19 -7.25 7.11 30.62 0.22 -7.04 16 23 C 0.12 2.46 5.12 38.15 0.20 2.66 16 24 C -0.13 -2.66 9.00 22.39 0.20 -2.46 16 25 C -0.11 -1.84 10.04 22.25 0.22 -1.62 16 26 C -0.13 -1.65 10.04 22.29 0.22 -1.42 16 27 C -0.11 -1.41 10.04 22.25 0.22 -1.19 16 28 C -0.13 -2.13 9.34 22.39 0.21 -1.92 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.66 6.95 -2.39 -0.02 0.65 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.82 7.45 -2.39 -0.02 0.80 16 33 H 0.10 0.97 6.47 -2.39 -0.02 0.95 16 34 H 0.11 2.34 7.25 -2.39 -0.02 2.32 16 35 H 0.11 2.38 6.95 -2.38 -0.02 2.36 16 36 H 0.41 12.20 7.46 -92.71 -0.69 11.51 16 37 H 0.40 14.56 8.48 -92.71 -0.79 13.77 16 38 H 0.04 1.68 7.87 -2.39 -0.02 1.66 16 39 H 0.06 2.25 8.09 -2.39 -0.02 2.23 16 40 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 41 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.09 8.14 -2.39 -0.02 3.08 16 43 H 0.08 3.19 6.54 -2.38 -0.02 3.18 16 44 H 0.10 3.43 8.14 -2.39 -0.02 3.41 16 45 H 0.11 2.41 8.06 -2.91 -0.02 2.39 16 46 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 47 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 48 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 49 H 0.14 1.72 7.90 -2.91 -0.02 1.69 16 Total: -1.00 -75.48 403.45 1.15 -74.33 By element: Atomic # 1 Polarization: 40.87 SS G_CDS: -0.60 Total: 40.27 kcal Atomic # 6 Polarization: 1.88 SS G_CDS: 6.76 Total: 8.64 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -6.61 Total: -125.17 kcal Atomic # 8 Polarization: -44.06 SS G_CDS: -0.11 Total: -44.17 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.70 Total: 46.09 kcal Total: -75.48 1.15 -74.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922307509.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.810 kcal (2) G-P(sol) polarization free energy of solvation -75.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds