Wall clock time and date at job start Wed Apr 1 2020 05:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47334 * 2 1 4 4 C 1.34775 * 119.99954 * 82.30571 * 3 2 1 5 5 O 1.21362 * 119.99870 * 178.68827 * 4 3 2 6 6 C 1.49351 * 120.00185 * 358.96011 * 4 3 2 7 7 O 1.21375 * 119.99920 * 352.30827 * 6 4 3 8 8 N 1.34778 * 120.00399 * 172.29509 * 6 4 3 9 9 C 1.39726 * 120.00233 * 185.89119 * 8 6 4 10 10 C 1.38929 * 120.07474 * 208.92706 * 9 8 6 11 11 C 1.38097 * 119.91792 * 179.77200 * 10 9 8 12 12 C 1.38286 * 120.07990 * 0.50635 * 11 10 9 13 13 C 1.50702 * 119.92672 * 179.72596 * 12 11 10 14 14 C 1.50705 * 109.47104 * 270.01884 * 13 12 11 15 15 H 1.07996 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00515 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99690 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47110 * 90.00013 * 18 16 14 20 20 H 1.48497 * 109.46933 * 210.00207 * 18 16 14 21 21 H 1.48500 * 109.47022 * 330.00183 * 18 16 14 22 22 C 1.38302 * 120.15335 * 359.74342 * 12 11 10 23 23 C 1.38098 * 120.06967 * 0.02562 * 22 12 11 24 24 C 1.46503 * 120.00226 * 262.30824 * 3 2 1 25 25 H 1.08998 * 110.27496 * 353.25397 * 24 3 2 26 26 C 1.54601 * 110.31011 * 115.44558 * 24 3 2 27 27 C 1.54930 * 102.92289 * 96.95887 * 26 24 3 28 28 N 1.48541 * 103.22740 * 37.41485 * 27 26 24 29 29 C 1.47907 * 105.81800 * 320.79264 * 28 27 26 30 30 H 1.09006 * 109.47070 * 299.99875 * 1 2 3 31 31 H 1.09003 * 109.47477 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47070 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47477 * 120.00206 * 2 1 3 35 35 H 0.97001 * 119.99809 * 5.90266 * 8 6 4 36 36 H 1.07996 * 120.04280 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.96028 * 180.22914 * 11 10 9 38 38 H 1.08999 * 109.47121 * 30.01809 * 13 12 11 39 39 H 1.09001 * 109.46961 * 150.02178 * 13 12 11 40 40 H 0.96998 * 120.00236 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.96291 * 179.97438 * 22 12 11 42 42 H 1.07997 * 120.03211 * 180.02562 * 23 22 12 43 43 H 1.08997 * 110.72451 * 215.32096 * 26 24 3 44 44 H 1.08996 * 110.72135 * 338.60055 * 26 24 3 45 45 H 1.08998 * 110.67007 * 278.98224 * 27 26 24 46 46 H 1.08996 * 110.81327 * 155.91727 * 27 26 24 47 47 H 1.00896 * 110.99919 * 81.30918 * 28 27 26 48 48 H 1.08995 * 109.91491 * 265.97396 * 29 28 27 49 49 H 1.09000 * 110.07667 * 144.77526 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0956 2.0686 1.1567 5 8 2.5226 3.2046 1.1600 6 6 1.6616 1.4302 2.4352 7 8 1.1109 0.3487 2.4172 8 7 1.8816 2.0549 3.6091 9 6 1.5885 1.4061 4.8114 10 6 1.2290 2.1451 5.9316 11 6 0.9354 1.5003 7.1170 12 6 1.0092 0.1215 7.1927 13 6 0.6941 -0.5782 8.4897 14 6 1.9542 -0.7169 9.3047 15 1 2.8896 -0.3369 8.9214 16 6 1.9127 -1.3290 10.5394 17 7 0.7736 -1.7923 11.0058 18 14 3.4745 -1.5004 11.5498 19 1 3.6329 -0.3090 12.4221 20 1 3.3887 -2.7215 12.3904 21 1 4.6434 -1.6067 10.6401 22 6 1.3718 -0.6169 6.0809 23 6 1.6621 0.0211 4.8911 24 6 2.4226 2.0152 -1.2573 25 1 2.4100 1.2873 -2.0685 26 6 1.4880 3.2025 -1.5844 27 6 2.2804 4.4236 -1.0539 28 7 3.6887 4.0833 -1.3815 29 6 3.8255 2.6345 -1.1167 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2433 2.9549 3.6192 36 1 1.1751 3.2222 5.8743 37 1 0.6522 2.0739 7.9871 38 1 -0.0377 0.0050 9.0487 39 1 0.2867 -1.5671 8.2794 40 1 0.7444 -2.2226 11.8746 41 1 1.4289 -1.6935 6.1436 42 1 1.9448 -0.5561 4.0232 43 1 1.3291 3.2834 -2.6597 44 1 0.5381 3.1015 -1.0595 45 1 2.1505 4.5280 0.0233 46 1 1.9757 5.3356 -1.5670 47 1 3.8972 4.2960 -2.3455 48 1 4.2019 2.4757 -0.1062 49 1 4.5045 2.1843 -1.8407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927807780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:20 Heat of formation + Delta-G solvation = -14.008849 kcal Electronic energy + Delta-G solvation = -30302.421455 eV Core-core repulsion = 26230.278684 eV Total energy + Delta-G solvation = -4072.142771 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.55468 -39.99120 -38.33113 -37.54330 -36.29085 -34.79069 -33.03004 -31.11948 -30.60340 -30.37221 -29.71904 -28.64877 -27.01658 -25.12768 -23.63963 -22.81858 -22.50114 -22.25486 -21.37499 -20.23200 -19.54885 -18.04912 -17.41333 -17.19063 -16.48322 -16.31606 -16.18018 -15.89858 -15.22887 -14.98904 -14.76140 -14.37292 -14.26974 -14.00765 -13.91685 -13.58231 -13.29642 -13.09429 -12.92995 -12.87610 -12.64698 -12.38197 -12.12102 -12.07152 -11.87550 -11.78528 -11.57309 -11.31589 -11.27321 -11.17777 -11.04019 -10.80631 -10.60154 -10.38719 -10.04878 -9.65239 -9.36656 -9.30632 -9.12134 -8.78350 -8.43590 -8.35284 -7.44501 -6.04799 -4.08996 1.08180 1.96224 1.99703 2.13063 3.03579 3.20608 3.30076 3.36467 3.40651 3.89728 4.12282 4.26077 4.35988 4.43944 4.52878 4.58352 4.69967 4.92822 4.96465 5.06018 5.13198 5.23669 5.29094 5.36861 5.37322 5.45722 5.48285 5.60454 5.64080 5.69488 5.83503 5.90890 5.99229 6.01819 6.09585 6.13886 6.21695 6.42686 6.57808 6.59282 6.74534 6.79125 7.10293 7.10971 7.14543 7.25219 7.47913 7.57979 7.67047 7.82997 7.90402 7.90851 8.30662 8.96341 9.54942 11.04757 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.002098 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.873984 B =13341.006187 C =13715.898648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.101 3.899 3 N -0.577 5.577 4 C 0.505 3.495 5 O -0.500 6.500 6 C 0.497 3.503 7 O -0.494 6.494 8 N -0.633 5.633 9 C 0.099 3.901 10 C -0.138 4.138 11 C -0.107 4.107 12 C -0.039 4.039 13 C 0.047 3.953 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.107 4.107 23 C -0.118 4.118 24 C 0.116 3.884 25 H 0.098 0.902 26 C -0.168 4.168 27 C 0.034 3.966 28 N -0.661 5.661 29 C 0.041 3.959 30 H 0.068 0.932 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.104 0.896 35 H 0.417 0.583 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.262 0.738 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.119 0.881 46 H 0.063 0.937 47 H 0.329 0.671 48 H 0.086 0.914 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.507 8.406 -28.153 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.021 4.021 3 N -0.311 5.311 4 C 0.288 3.712 5 O -0.375 6.375 6 C 0.279 3.721 7 O -0.369 6.369 8 N -0.279 5.279 9 C 0.007 3.993 10 C -0.159 4.159 11 C -0.125 4.125 12 C -0.039 4.039 13 C 0.010 3.990 14 C -0.550 4.550 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.126 4.126 23 C -0.138 4.138 24 C 0.011 3.989 25 H 0.116 0.884 26 C -0.208 4.208 27 C -0.094 4.094 28 N -0.287 5.287 29 C -0.090 4.090 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.122 0.878 35 H 0.254 0.746 36 H 0.135 0.865 37 H 0.142 0.858 38 H 0.047 0.953 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.137 0.863 46 H 0.082 0.918 47 H 0.144 0.856 48 H 0.105 0.895 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.625 8.397 -27.445 28.746 hybrid contribution 0.367 -0.218 -0.245 0.492 sum 1.992 8.179 -27.689 28.941 Atomic orbital electron populations 1.22127 0.95067 1.02701 1.01986 1.22011 0.95529 0.80565 1.03983 1.47940 1.62774 1.14770 1.05654 1.20124 0.79927 0.86250 0.84881 1.90678 1.43795 1.17082 1.85985 1.20140 0.80746 0.86194 0.85041 1.90741 1.39364 1.20309 1.86494 1.43055 1.61720 1.19358 1.03725 1.17526 1.04889 0.92255 0.84660 1.20749 1.03242 0.98971 0.92891 1.20903 1.00521 0.94615 0.96493 1.20762 0.92977 0.93462 0.96743 1.18366 0.97370 0.95479 0.87747 1.21055 0.94083 1.38041 1.01776 0.92444 1.25015 0.96255 0.95419 0.97672 1.69954 1.24993 1.39217 1.19117 0.86538 0.83464 0.77589 0.80130 1.20586 1.21174 1.19806 1.21003 0.99734 1.00154 0.91697 1.21041 1.01678 0.92420 0.98668 1.22581 0.95592 0.95622 0.85132 0.88397 1.23505 0.99777 0.96271 1.01247 1.23593 0.85805 0.95403 1.04616 1.62582 1.24246 1.15068 1.26826 1.23054 0.94584 0.88123 1.03248 0.91307 0.93510 0.91385 0.90852 0.87831 0.74632 0.86534 0.85808 0.95258 0.95238 0.92831 0.85938 0.85440 0.90865 0.90491 0.86341 0.91828 0.85632 0.89539 0.91408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.60 37.16 0.36 -1.02 16 2 C 0.10 0.82 5.74 -4.05 -0.02 0.80 16 3 N -0.58 -5.11 2.45 -165.11 -0.40 -5.51 16 4 C 0.51 5.59 6.81 -11.63 -0.08 5.51 16 5 O -0.50 -6.01 10.78 5.49 0.06 -5.95 16 6 C 0.50 6.31 7.34 -11.63 -0.09 6.23 16 7 O -0.49 -6.89 8.80 5.47 0.05 -6.85 16 8 N -0.63 -8.25 5.34 -10.30 -0.05 -8.30 16 9 C 0.10 1.58 6.35 -83.75 -0.53 1.04 16 10 C -0.14 -2.22 9.95 -39.38 -0.39 -2.61 16 11 C -0.11 -2.01 9.69 -39.62 -0.38 -2.39 16 12 C -0.04 -0.83 5.07 -104.58 -0.53 -1.36 16 13 C 0.05 1.20 5.10 -29.03 -0.15 1.05 16 14 C -0.51 -14.15 9.09 -34.44 -0.31 -14.46 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 18 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C -0.11 -2.10 9.69 -39.61 -0.38 -2.48 16 23 C -0.12 -2.06 8.68 -39.38 -0.34 -2.40 16 24 C 0.12 0.84 3.58 -66.57 -0.24 0.60 16 25 H 0.10 0.51 7.72 -51.93 -0.40 0.11 16 26 C -0.17 -1.21 6.41 -24.87 -0.16 -1.37 16 27 C 0.03 0.30 6.88 -1.90 -0.01 0.28 16 28 N -0.66 -5.68 7.50 -110.09 -0.83 -6.50 16 29 C 0.04 0.33 6.55 -2.75 -0.02 0.31 16 30 H 0.07 0.76 6.35 -51.93 -0.33 0.43 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.43 7.75 -51.93 -0.40 0.02 16 34 H 0.10 1.02 5.88 -51.93 -0.31 0.71 16 35 H 0.42 4.65 8.29 -40.82 -0.34 4.31 16 36 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 37 H 0.12 2.24 8.06 -52.49 -0.42 1.81 16 38 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.12 2.34 8.06 -52.49 -0.42 1.91 16 42 H 0.13 2.11 6.12 -52.49 -0.32 1.78 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.64 8.05 -51.93 -0.42 0.22 16 45 H 0.12 1.34 4.99 -52.10 -0.26 1.08 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.33 2.12 8.92 -39.29 -0.35 1.77 16 48 H 0.09 0.93 6.43 -51.93 -0.33 0.60 16 49 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -30.74 388.60 -10.21 -40.95 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -7.22 Total: 6.14 kcal Atomic # 6 Polarization: -7.36 SS G_CDS: -3.38 Total: -10.74 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: -0.55 Total: -45.80 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: 0.11 Total: -12.80 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.74 -10.21 -40.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927807780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.940 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds