Wall clock time and date at job start Wed Apr 1 2020 05:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46496 * 109.47334 * 2 1 4 4 C 1.34775 * 119.99954 * 82.30571 * 3 2 1 5 5 O 1.21362 * 119.99870 * 178.68827 * 4 3 2 6 6 C 1.49351 * 120.00185 * 358.96011 * 4 3 2 7 7 O 1.21375 * 119.99920 * 352.30827 * 6 4 3 8 8 N 1.34778 * 120.00399 * 172.29509 * 6 4 3 9 9 C 1.39726 * 120.00233 * 185.89119 * 8 6 4 10 10 C 1.38929 * 120.07474 * 208.92706 * 9 8 6 11 11 C 1.38097 * 119.91792 * 179.77200 * 10 9 8 12 12 C 1.38286 * 120.07990 * 0.50635 * 11 10 9 13 13 C 1.50702 * 119.92672 * 179.72596 * 12 11 10 14 14 C 1.50705 * 109.47104 * 270.01884 * 13 12 11 15 15 H 1.07996 * 119.99627 * 359.97438 * 14 13 12 16 16 C 1.37873 * 119.99809 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00515 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99690 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47110 * 90.00013 * 18 16 14 20 20 H 1.48497 * 109.46933 * 210.00207 * 18 16 14 21 21 H 1.48500 * 109.47022 * 330.00183 * 18 16 14 22 22 C 1.38302 * 120.15335 * 359.74342 * 12 11 10 23 23 C 1.38098 * 120.06967 * 0.02562 * 22 12 11 24 24 C 1.46503 * 120.00226 * 262.30824 * 3 2 1 25 25 H 1.08998 * 110.27496 * 353.25397 * 24 3 2 26 26 C 1.54601 * 110.31011 * 115.44558 * 24 3 2 27 27 C 1.54930 * 102.92289 * 96.95887 * 26 24 3 28 28 N 1.48541 * 103.22740 * 37.41485 * 27 26 24 29 29 C 1.47907 * 105.81800 * 320.79264 * 28 27 26 30 30 H 1.09006 * 109.47070 * 299.99875 * 1 2 3 31 31 H 1.09003 * 109.47477 * 59.99794 * 1 2 3 32 32 H 1.08998 * 109.47121 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47070 * 240.00125 * 2 1 3 34 34 H 1.09003 * 109.47477 * 120.00206 * 2 1 3 35 35 H 0.97001 * 119.99809 * 5.90266 * 8 6 4 36 36 H 1.07996 * 120.04280 * 0.02562 * 10 9 8 37 37 H 1.08000 * 119.96028 * 180.22914 * 11 10 9 38 38 H 1.08999 * 109.47121 * 30.01809 * 13 12 11 39 39 H 1.09001 * 109.46961 * 150.02178 * 13 12 11 40 40 H 0.96998 * 120.00236 * 180.02562 * 17 16 14 41 41 H 1.07998 * 119.96291 * 179.97438 * 22 12 11 42 42 H 1.07997 * 120.03211 * 180.02562 * 23 22 12 43 43 H 1.08997 * 110.72451 * 215.32096 * 26 24 3 44 44 H 1.08996 * 110.72135 * 338.60055 * 26 24 3 45 45 H 1.08998 * 110.67007 * 278.98224 * 27 26 24 46 46 H 1.08996 * 110.81327 * 155.91727 * 27 26 24 47 47 H 1.00896 * 110.99919 * 81.30918 * 28 27 26 48 48 H 1.08995 * 109.91491 * 265.97396 * 29 28 27 49 49 H 1.09000 * 110.07667 * 144.77526 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0956 2.0686 1.1567 5 8 2.5226 3.2046 1.1600 6 6 1.6616 1.4302 2.4352 7 8 1.1109 0.3487 2.4172 8 7 1.8816 2.0549 3.6091 9 6 1.5885 1.4061 4.8114 10 6 1.2290 2.1451 5.9316 11 6 0.9354 1.5003 7.1170 12 6 1.0092 0.1215 7.1927 13 6 0.6941 -0.5782 8.4897 14 6 1.9542 -0.7169 9.3047 15 1 2.8896 -0.3369 8.9214 16 6 1.9127 -1.3290 10.5394 17 7 0.7736 -1.7923 11.0058 18 14 3.4745 -1.5004 11.5498 19 1 3.6329 -0.3090 12.4221 20 1 3.3887 -2.7215 12.3904 21 1 4.6434 -1.6067 10.6401 22 6 1.3718 -0.6169 6.0809 23 6 1.6621 0.0211 4.8911 24 6 2.4226 2.0152 -1.2573 25 1 2.4100 1.2873 -2.0685 26 6 1.4880 3.2025 -1.5844 27 6 2.2804 4.4236 -1.0539 28 7 3.6887 4.0833 -1.3815 29 6 3.8255 2.6345 -1.1167 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.2433 2.9549 3.6192 36 1 1.1751 3.2222 5.8743 37 1 0.6522 2.0739 7.9871 38 1 -0.0377 0.0050 9.0487 39 1 0.2867 -1.5671 8.2794 40 1 0.7444 -2.2226 11.8746 41 1 1.4289 -1.6935 6.1436 42 1 1.9448 -0.5561 4.0232 43 1 1.3291 3.2834 -2.6597 44 1 0.5381 3.1015 -1.0595 45 1 2.1505 4.5280 0.0233 46 1 1.9757 5.3356 -1.5670 47 1 3.8972 4.2960 -2.3455 48 1 4.2019 2.4757 -0.1062 49 1 4.5045 2.1843 -1.8407 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927807780.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:19 Heat of formation + Delta-G solvation = -34.051834 kcal Electronic energy + Delta-G solvation = -30303.290584 eV Core-core repulsion = 26230.278684 eV Total energy + Delta-G solvation = -4073.011900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.45511 -41.02075 -39.57479 -38.35687 -37.18036 -36.01137 -34.94891 -32.28884 -31.83577 -31.75613 -30.34486 -29.40319 -28.61597 -26.31728 -24.95075 -24.02375 -23.79543 -22.91680 -22.39261 -21.59741 -20.46031 -18.95306 -18.52559 -18.46301 -17.88727 -17.33889 -17.06205 -16.91233 -16.65495 -16.11651 -15.98327 -15.70744 -15.28095 -14.97188 -14.80577 -14.53442 -14.51576 -14.31677 -14.24781 -13.99462 -13.72024 -13.53657 -13.29496 -13.21168 -13.04479 -12.69140 -12.62574 -12.56168 -12.47300 -12.43144 -12.17174 -12.04805 -11.85632 -11.69848 -11.61138 -11.48656 -11.02225 -10.59679 -10.37467 -9.84369 -9.78747 -9.41689 -8.91194 -8.18018 -6.32223 0.02295 0.54560 0.70964 1.19198 1.40660 1.41394 1.52908 2.05546 2.32319 2.40532 2.97344 3.11618 3.16938 3.34856 3.68817 3.87398 3.99458 4.01817 4.11120 4.12515 4.35261 4.36767 4.39444 4.41702 4.53460 4.56495 4.56951 4.63293 4.65604 4.73524 4.90833 5.00253 5.01486 5.04966 5.10667 5.22620 5.27123 5.33012 5.36716 5.39170 5.44123 5.54655 5.57103 5.75840 5.81022 5.92520 6.06772 6.08774 6.18992 6.23686 6.60260 6.69058 6.80537 6.92685 7.36218 8.90081 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.022541 B = 0.002098 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.873984 B =13341.006187 C =13715.898648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.100 3.900 3 N -0.568 5.568 4 C 0.506 3.494 5 O -0.510 6.510 6 C 0.495 3.505 7 O -0.505 6.505 8 N -0.630 5.630 9 C 0.115 3.885 10 C -0.128 4.128 11 C -0.112 4.112 12 C -0.072 4.072 13 C 0.057 3.943 14 C -0.526 4.526 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.965 3.035 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.267 1.267 22 C -0.116 4.116 23 C -0.120 4.120 24 C 0.114 3.886 25 H 0.130 0.870 26 C -0.160 4.160 27 C 0.033 3.967 28 N -0.676 5.676 29 C 0.042 3.958 30 H 0.039 0.961 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.085 0.915 35 H 0.428 0.572 36 H 0.154 0.846 37 H 0.126 0.874 38 H 0.006 0.994 39 H 0.002 0.998 40 H 0.265 0.735 41 H 0.116 0.884 42 H 0.136 0.864 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.073 0.927 47 H 0.343 0.657 48 H 0.057 0.943 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.880 9.419 -31.096 32.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.021 4.021 3 N -0.301 5.301 4 C 0.288 3.712 5 O -0.387 6.387 6 C 0.278 3.722 7 O -0.381 6.381 8 N -0.277 5.277 9 C 0.022 3.978 10 C -0.148 4.148 11 C -0.130 4.130 12 C -0.072 4.072 13 C 0.020 3.980 14 C -0.564 4.564 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.789 3.211 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.135 4.135 23 C -0.140 4.140 24 C 0.010 3.990 25 H 0.148 0.852 26 C -0.200 4.200 27 C -0.096 4.096 28 N -0.303 5.303 29 C -0.089 4.089 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.103 0.897 35 H 0.267 0.733 36 H 0.172 0.828 37 H 0.144 0.856 38 H 0.025 0.975 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.134 0.866 42 H 0.154 0.846 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.091 0.909 47 H 0.159 0.841 48 H 0.075 0.925 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.004 9.423 -30.436 32.002 hybrid contribution -0.084 -0.486 0.507 0.707 sum 2.920 8.937 -29.929 31.371 Atomic orbital electron populations 1.22057 0.95348 1.02773 1.01145 1.22057 0.95185 0.80129 1.04729 1.48010 1.61682 1.14901 1.05547 1.19805 0.80330 0.86160 0.84868 1.90716 1.44540 1.17407 1.86022 1.20589 0.80090 0.85949 0.85570 1.90749 1.39570 1.20911 1.86829 1.43009 1.61912 1.19817 1.02930 1.17590 1.02644 0.91848 0.85746 1.21000 1.01507 1.00757 0.91499 1.20959 1.00628 0.93566 0.97886 1.20446 0.96545 0.94717 0.95507 1.18099 0.96064 0.94148 0.89707 1.21376 0.94722 1.37918 1.02401 0.92674 1.25925 0.99649 0.94971 0.98921 1.70078 1.27231 1.40025 1.19679 0.85450 0.79309 0.77875 0.78452 1.19605 1.20578 1.19099 1.20949 1.00375 0.99959 0.92174 1.21083 1.01617 0.93345 0.97916 1.22819 0.94960 0.96382 0.84821 0.85215 1.23459 0.98762 0.95331 1.02434 1.23468 0.86371 0.96691 1.03054 1.62474 1.24288 1.15556 1.28028 1.22997 0.95470 0.88190 1.02231 0.94199 0.92166 0.90905 0.87546 0.89677 0.73315 0.82793 0.85581 0.97536 0.97953 0.92595 0.86619 0.84585 0.88487 0.91706 0.89193 0.90854 0.84089 0.92483 0.89165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.60 71.98 0.69 -1.69 16 2 C 0.10 1.40 5.74 86.38 0.50 1.89 16 3 N -0.57 -8.82 2.45 -794.63 -1.94 -10.76 16 4 C 0.51 10.58 6.81 87.24 0.59 11.17 16 5 O -0.51 -11.80 10.78 -3.28 -0.04 -11.83 16 6 C 0.50 12.08 7.34 87.24 0.64 12.72 16 7 O -0.51 -13.77 8.80 -3.32 -0.03 -13.79 16 8 N -0.63 -15.51 5.34 -304.84 -1.63 -17.14 16 9 C 0.12 3.54 6.35 38.21 0.24 3.78 16 10 C -0.13 -3.90 9.95 22.40 0.22 -3.68 16 11 C -0.11 -4.24 9.69 22.25 0.22 -4.02 16 12 C -0.07 -3.18 5.07 -19.84 -0.10 -3.28 16 13 C 0.06 3.05 5.10 29.10 0.15 3.20 16 14 C -0.53 -30.11 9.09 25.60 0.23 -29.88 16 15 H 0.05 3.10 7.74 -2.91 -0.02 3.08 16 16 C 0.00 0.20 5.46 84.65 0.46 0.66 16 17 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 18 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 21 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 22 C -0.12 -4.69 9.69 22.25 0.22 -4.47 16 23 C -0.12 -4.15 8.68 22.40 0.19 -3.96 16 24 C 0.11 1.28 3.58 45.87 0.16 1.45 16 25 H 0.13 0.70 7.72 -2.39 -0.02 0.68 16 26 C -0.16 -1.85 6.41 31.80 0.20 -1.64 16 27 C 0.03 0.51 6.88 86.65 0.60 1.11 16 28 N -0.68 -10.19 7.50 -502.20 -3.77 -13.95 16 29 C 0.04 0.58 6.55 86.44 0.57 1.14 16 30 H 0.04 0.85 6.35 -2.38 -0.02 0.83 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 0.82 7.75 -2.38 -0.02 0.80 16 34 H 0.09 1.55 5.88 -2.39 -0.01 1.54 16 35 H 0.43 8.76 8.29 -92.71 -0.77 8.00 16 36 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 37 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 38 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 39 H 0.00 0.12 8.08 -2.39 -0.02 0.10 16 40 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 41 H 0.12 4.69 8.06 -2.91 -0.02 4.66 16 42 H 0.14 4.46 6.12 -2.91 -0.02 4.44 16 43 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.06 0.93 8.05 -2.39 -0.02 0.92 16 45 H 0.09 1.97 4.99 -5.01 -0.03 1.94 16 46 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 47 H 0.34 3.50 8.92 -89.70 -0.80 2.70 16 48 H 0.06 1.15 6.43 -2.39 -0.02 1.13 16 49 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -69.23 388.60 0.10 -69.12 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.59 Total: 23.35 kcal Atomic # 6 Polarization: -21.29 SS G_CDS: 5.79 Total: -15.50 kcal Atomic # 7 Polarization: -90.76 SS G_CDS: -7.05 Total: -97.81 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.06 Total: -25.63 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.23 0.10 -69.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927807780.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.073 kcal (2) G-P(sol) polarization free energy of solvation -69.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds