Wall clock time and date at job start Wed Apr 1 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47172 * 2 1 4 4 C 1.45755 * 117.94846 * 90.00134 * 3 2 1 5 5 C 1.52917 * 110.48772 * 199.07514 * 4 3 2 6 6 C 1.53346 * 108.67446 * 309.24502 * 5 4 3 7 7 C 1.53071 * 108.42432 * 67.53219 * 6 5 4 8 8 H 1.08999 * 109.39875 * 71.14132 * 7 6 5 9 9 N 1.46501 * 109.39909 * 190.96840 * 7 6 5 10 10 C 1.34781 * 119.99789 * 204.99931 * 9 7 6 11 11 O 1.21586 * 119.99821 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.39942 * 120.00415 * 175.37716 * 12 10 9 14 14 C 1.38860 * 120.07201 * 214.81075 * 13 12 10 15 15 C 1.38122 * 119.92597 * 179.76672 * 14 13 12 16 16 C 1.38277 * 120.07116 * 0.51175 * 15 14 13 17 17 C 1.50701 * 119.92987 * 179.76202 * 16 15 14 18 18 C 1.50693 * 109.47304 * 269.98035 * 17 16 15 19 19 H 1.08001 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00121 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99516 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47138 * 59.99984 * 22 20 18 24 24 H 1.48499 * 109.46992 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47103 * 300.00075 * 22 20 18 26 26 C 1.38277 * 120.13982 * 359.74441 * 16 15 14 27 27 C 1.38119 * 120.07101 * 359.97438 * 26 16 15 28 28 C 1.33353 * 117.94633 * 270.00223 * 3 2 1 29 29 O 1.21278 * 118.24741 * 357.75220 * 28 3 2 30 30 H 1.09001 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46789 * 299.99528 * 1 2 3 32 32 H 1.08998 * 109.47310 * 60.00355 * 1 2 3 33 33 H 1.09001 * 109.47160 * 239.99991 * 2 1 3 34 34 H 1.09003 * 109.47195 * 120.00101 * 2 1 3 35 35 H 1.09000 * 109.29734 * 78.76112 * 4 3 2 36 36 H 1.09000 * 109.29870 * 319.38854 * 4 3 2 37 37 H 1.08995 * 109.60462 * 69.00439 * 5 4 3 38 38 H 1.09001 * 109.60356 * 189.48962 * 5 4 3 39 39 H 1.09002 * 109.67046 * 187.26085 * 6 5 4 40 40 H 1.08995 * 109.67643 * 307.76271 * 6 5 4 41 41 H 0.96994 * 120.00074 * 25.00210 * 9 7 6 42 42 H 0.97008 * 119.99720 * 355.37631 * 12 10 9 43 43 H 1.07999 * 120.03561 * 0.02562 * 14 13 12 44 44 H 1.08002 * 119.96219 * 180.25662 * 15 14 13 45 45 H 1.08997 * 109.46876 * 29.98368 * 17 16 15 46 46 H 1.08999 * 109.46750 * 149.97890 * 17 16 15 47 47 H 0.97007 * 119.99759 * 179.97438 * 21 20 18 48 48 H 1.08004 * 119.96830 * 179.97438 * 26 16 15 49 49 H 1.08003 * 120.03500 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2461 2.0252 1.2876 5 6 2.2870 3.5453 1.1259 6 6 3.2667 3.8929 -0.0014 7 6 2.6788 3.3950 -1.3241 8 1 1.8273 4.0174 -1.5989 9 7 3.6997 3.4766 -2.3717 10 6 3.3320 3.5871 -3.6637 11 8 2.1532 3.6194 -3.9596 12 7 4.2711 3.6617 -4.6275 13 6 3.8916 3.6788 -5.9744 14 6 4.6866 3.0586 -6.9292 15 6 4.3068 3.0732 -8.2570 16 6 3.1418 3.7136 -8.6375 17 6 2.7331 3.7321 -10.0879 18 6 3.3217 4.9456 -10.7601 19 1 3.9311 5.6343 -10.1939 20 6 3.0830 5.1761 -12.0985 21 7 2.3414 4.3371 -12.7881 22 14 3.8132 6.6799 -12.9319 23 1 5.2941 6.6294 -12.8351 24 1 3.4104 6.6981 -14.3611 25 1 3.3149 7.9080 -12.2620 26 6 2.3507 4.3366 -7.6898 27 6 2.7220 4.3207 -6.3595 28 6 2.2266 1.9704 -1.1780 29 8 2.0414 1.3209 -2.1854 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1946 1.6810 1.6997 36 1 1.4411 1.7572 1.9718 37 1 1.2927 3.9130 0.8726 38 1 2.6227 4.0031 2.0564 39 1 3.4068 4.9730 -0.0456 40 1 4.2245 3.4059 0.1816 41 1 4.6401 3.4512 -2.1355 42 1 5.2101 3.7036 -4.3876 43 1 5.5987 2.5618 -6.6332 44 1 4.9225 2.5874 -8.9996 45 1 3.0989 2.8309 -10.5799 46 1 1.6461 3.7689 -10.1586 47 1 2.1732 4.4994 -13.7296 48 1 1.4415 4.8364 -7.9901 49 1 2.1039 4.8079 -5.6199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932560949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:06 Heat of formation + Delta-G solvation = -36.868036 kcal Electronic energy + Delta-G solvation = -29671.766456 eV Core-core repulsion = 25598.632437 eV Total energy + Delta-G solvation = -4073.134019 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.22394 -40.06776 -38.21947 -36.84422 -35.95502 -34.65256 -33.50522 -32.83447 -30.62521 -30.26295 -30.13636 -29.04608 -26.46884 -25.05603 -23.96827 -23.02151 -22.27986 -22.20471 -21.09863 -20.09944 -19.29800 -18.31038 -17.59112 -17.04259 -16.88516 -16.26497 -16.13239 -15.30277 -15.02929 -14.86824 -14.76513 -14.48078 -14.21241 -14.13462 -14.11211 -13.86763 -13.64274 -12.96576 -12.86562 -12.70274 -12.49424 -12.43945 -12.29490 -12.04740 -11.90881 -11.78947 -11.53128 -11.32489 -11.27110 -11.19010 -10.74650 -10.56676 -10.34515 -10.29647 -10.01474 -9.76997 -9.36080 -9.19030 -9.13473 -9.04562 -8.35018 -8.14813 -7.24448 -5.96313 -4.00093 2.06394 2.16320 2.22586 2.54638 2.83600 3.33180 3.36718 3.40488 3.43994 4.01509 4.09261 4.13954 4.16342 4.36295 4.46042 4.67960 4.71288 4.73018 4.80676 4.93223 5.00696 5.08872 5.19161 5.21420 5.35707 5.37315 5.38607 5.53566 5.56062 5.64563 5.71645 5.87501 6.05686 6.07007 6.14042 6.18339 6.26426 6.33035 6.62421 6.79459 7.07415 7.10613 7.15473 7.28891 7.34018 7.61322 7.85027 7.92527 7.97690 7.99218 7.99678 8.41145 8.62634 9.05038 9.62918 11.13192 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.001918 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.815701 B =14595.744516 C =15088.607556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.103 3.897 3 N -0.608 5.608 4 C 0.112 3.888 5 C -0.133 4.133 6 C -0.130 4.130 7 C 0.158 3.842 8 H 0.120 0.880 9 N -0.732 5.732 10 C 0.708 3.292 11 O -0.556 6.556 12 N -0.680 5.680 13 C 0.124 3.876 14 C -0.145 4.145 15 C -0.109 4.109 16 C -0.045 4.045 17 C 0.048 3.952 18 C -0.509 4.509 19 H 0.057 0.943 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.109 4.109 27 C -0.116 4.116 28 C 0.495 3.505 29 O -0.516 6.516 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.397 0.603 42 H 0.400 0.600 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.028 0.972 46 H 0.028 0.972 47 H 0.262 0.738 48 H 0.120 0.880 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 -4.126 35.366 35.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.344 5.344 4 C -0.011 4.011 5 C -0.171 4.171 6 C -0.168 4.168 7 C 0.049 3.951 8 H 0.138 0.862 9 N -0.389 5.389 10 C 0.409 3.591 11 O -0.430 6.430 12 N -0.327 5.327 13 C 0.031 3.969 14 C -0.166 4.166 15 C -0.128 4.128 16 C -0.046 4.046 17 C 0.012 3.988 18 C -0.548 4.548 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.128 4.128 27 C -0.136 4.136 28 C 0.281 3.719 29 O -0.390 6.390 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.105 0.895 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.232 0.768 42 H 0.234 0.766 43 H 0.130 0.870 44 H 0.139 0.861 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.071 0.929 48 H 0.138 0.862 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.508 -4.465 34.380 34.759 hybrid contribution 1.316 0.724 -0.122 1.507 sum 3.823 -3.742 34.258 34.673 Atomic orbital electron populations 1.22094 0.95727 1.02334 1.02331 1.21463 0.94664 0.82604 1.03223 1.47473 1.66563 1.14598 1.05733 1.21408 1.01721 0.92948 0.84999 1.21847 1.00776 0.94922 0.99534 1.21963 0.99525 1.02894 0.92414 1.20587 0.93580 0.93276 0.87668 0.86247 1.44779 1.08908 1.80628 1.04564 1.15798 0.85406 0.77616 0.80309 1.90953 1.15860 1.55435 1.80735 1.42370 1.08770 1.77423 1.04186 1.17279 0.97599 1.01100 0.80942 1.20706 1.00672 1.01862 0.93318 1.20844 0.97109 1.00470 0.94328 1.20684 0.92910 0.92772 0.98206 1.18334 0.97317 0.97752 0.85446 1.21043 1.31434 1.08005 0.94282 0.92522 1.25024 0.95328 0.96693 0.97418 1.69955 1.38320 1.36485 1.08622 0.86598 0.79539 0.83261 0.78273 1.20227 1.21306 1.20206 1.21001 1.00228 0.99835 0.91691 1.21134 0.96611 0.99504 0.96340 1.20728 0.78151 0.90028 0.83032 1.90801 1.49409 1.63329 1.35413 0.91560 0.92760 0.92001 0.89502 0.90751 0.91660 0.90528 0.90363 0.88973 0.89509 0.90453 0.76842 0.76634 0.86987 0.86110 0.95374 0.95336 0.92860 0.86199 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.23 37.16 0.38 -0.88 16 2 C 0.10 0.80 5.94 -4.04 -0.02 0.78 16 3 N -0.61 -4.84 2.81 -174.97 -0.49 -5.33 16 4 C 0.11 0.43 6.32 -4.49 -0.03 0.41 16 5 C -0.13 -0.39 6.02 -26.59 -0.16 -0.55 16 6 C -0.13 -0.55 5.50 -26.52 -0.15 -0.69 16 7 C 0.16 1.45 2.70 -69.30 -0.19 1.26 16 8 H 0.12 1.30 7.58 -51.93 -0.39 0.90 16 9 N -0.73 -7.38 4.97 -60.03 -0.30 -7.68 16 10 C 0.71 10.64 7.83 -86.92 -0.68 9.96 16 11 O -0.56 -10.89 12.98 3.51 0.05 -10.84 16 12 N -0.68 -9.56 5.34 -14.23 -0.08 -9.64 16 13 C 0.12 2.23 6.30 -83.69 -0.53 1.70 16 14 C -0.15 -2.57 9.97 -39.39 -0.39 -2.97 16 15 C -0.11 -2.24 9.69 -39.61 -0.38 -2.62 16 16 C -0.05 -1.05 5.07 -104.59 -0.53 -1.58 16 17 C 0.05 1.30 5.10 -29.04 -0.15 1.15 16 18 C -0.51 -14.68 9.09 -34.44 -0.31 -14.99 16 19 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 22 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 C -0.11 -2.39 9.69 -39.61 -0.38 -2.77 16 27 C -0.12 -2.33 8.70 -39.39 -0.34 -2.68 16 28 C 0.50 5.71 7.19 -11.87 -0.09 5.63 16 29 O -0.52 -8.75 14.92 3.78 0.06 -8.70 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.90 7.13 -51.93 -0.37 0.53 16 34 H 0.07 0.38 8.01 -51.93 -0.42 -0.04 16 35 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 36 H 0.08 0.20 8.10 -51.93 -0.42 -0.22 16 37 H 0.08 0.28 8.12 -51.93 -0.42 -0.14 16 38 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 39 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.08 0.25 8.10 -51.93 -0.42 -0.17 16 41 H 0.40 2.58 8.60 -40.82 -0.35 2.23 16 42 H 0.40 3.96 8.84 -40.82 -0.36 3.60 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 46 H 0.03 0.81 8.08 -51.93 -0.42 0.39 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 48 H 0.12 2.57 8.06 -52.48 -0.42 2.14 16 49 H 0.13 2.60 6.22 -52.48 -0.33 2.27 16 LS Contribution 401.92 15.07 6.06 6.06 Total: -1.00 -38.47 401.92 -10.71 -49.18 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -7.67 Total: 3.63 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -4.05 Total: -7.30 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.13 Total: -49.02 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: 0.10 Total: -19.54 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -38.47 -10.71 -49.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.312 kcal (2) G-P(sol) polarization free energy of solvation -38.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds