Wall clock time and date at job start Wed Apr 1 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47172 * 2 1 4 4 C 1.45755 * 117.94846 * 90.00134 * 3 2 1 5 5 C 1.52917 * 110.48772 * 199.07514 * 4 3 2 6 6 C 1.53346 * 108.67446 * 309.24502 * 5 4 3 7 7 C 1.53071 * 108.42432 * 67.53219 * 6 5 4 8 8 H 1.08999 * 109.39875 * 71.14132 * 7 6 5 9 9 N 1.46501 * 109.39909 * 190.96840 * 7 6 5 10 10 C 1.34781 * 119.99789 * 204.99931 * 9 7 6 11 11 O 1.21586 * 119.99821 * 0.02562 * 10 9 7 12 12 N 1.34774 * 120.00020 * 180.02562 * 10 9 7 13 13 C 1.39942 * 120.00415 * 175.37716 * 12 10 9 14 14 C 1.38860 * 120.07201 * 214.81075 * 13 12 10 15 15 C 1.38122 * 119.92597 * 179.76672 * 14 13 12 16 16 C 1.38277 * 120.07116 * 0.51175 * 15 14 13 17 17 C 1.50701 * 119.92987 * 179.76202 * 16 15 14 18 18 C 1.50693 * 109.47304 * 269.98035 * 17 16 15 19 19 H 1.08001 * 120.00121 * 0.02562 * 18 17 16 20 20 C 1.37884 * 120.00121 * 179.97438 * 18 17 16 21 21 N 1.31508 * 119.99516 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00054 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47138 * 59.99984 * 22 20 18 24 24 H 1.48499 * 109.46992 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.47103 * 300.00075 * 22 20 18 26 26 C 1.38277 * 120.13982 * 359.74441 * 16 15 14 27 27 C 1.38119 * 120.07101 * 359.97438 * 26 16 15 28 28 C 1.33353 * 117.94633 * 270.00223 * 3 2 1 29 29 O 1.21278 * 118.24741 * 357.75220 * 28 3 2 30 30 H 1.09001 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.46789 * 299.99528 * 1 2 3 32 32 H 1.08998 * 109.47310 * 60.00355 * 1 2 3 33 33 H 1.09001 * 109.47160 * 239.99991 * 2 1 3 34 34 H 1.09003 * 109.47195 * 120.00101 * 2 1 3 35 35 H 1.09000 * 109.29734 * 78.76112 * 4 3 2 36 36 H 1.09000 * 109.29870 * 319.38854 * 4 3 2 37 37 H 1.08995 * 109.60462 * 69.00439 * 5 4 3 38 38 H 1.09001 * 109.60356 * 189.48962 * 5 4 3 39 39 H 1.09002 * 109.67046 * 187.26085 * 6 5 4 40 40 H 1.08995 * 109.67643 * 307.76271 * 6 5 4 41 41 H 0.96994 * 120.00074 * 25.00210 * 9 7 6 42 42 H 0.97008 * 119.99720 * 355.37631 * 12 10 9 43 43 H 1.07999 * 120.03561 * 0.02562 * 14 13 12 44 44 H 1.08002 * 119.96219 * 180.25662 * 15 14 13 45 45 H 1.08997 * 109.46876 * 29.98368 * 17 16 15 46 46 H 1.08999 * 109.46750 * 149.97890 * 17 16 15 47 47 H 0.97007 * 119.99759 * 179.97438 * 21 20 18 48 48 H 1.08004 * 119.96830 * 179.97438 * 26 16 15 49 49 H 1.08003 * 120.03500 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2461 2.0252 1.2876 5 6 2.2870 3.5453 1.1259 6 6 3.2667 3.8929 -0.0014 7 6 2.6788 3.3950 -1.3241 8 1 1.8273 4.0174 -1.5989 9 7 3.6997 3.4766 -2.3717 10 6 3.3320 3.5871 -3.6637 11 8 2.1532 3.6194 -3.9596 12 7 4.2711 3.6617 -4.6275 13 6 3.8916 3.6788 -5.9744 14 6 4.6866 3.0586 -6.9292 15 6 4.3068 3.0732 -8.2570 16 6 3.1418 3.7136 -8.6375 17 6 2.7331 3.7321 -10.0879 18 6 3.3217 4.9456 -10.7601 19 1 3.9311 5.6343 -10.1939 20 6 3.0830 5.1761 -12.0985 21 7 2.3414 4.3371 -12.7881 22 14 3.8132 6.6799 -12.9319 23 1 5.2941 6.6294 -12.8351 24 1 3.4104 6.6981 -14.3611 25 1 3.3149 7.9080 -12.2620 26 6 2.3507 4.3366 -7.6898 27 6 2.7220 4.3207 -6.3595 28 6 2.2266 1.9704 -1.1780 29 8 2.0414 1.3209 -2.1854 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.1946 1.6810 1.6997 36 1 1.4411 1.7572 1.9718 37 1 1.2927 3.9130 0.8726 38 1 2.6227 4.0031 2.0564 39 1 3.4068 4.9730 -0.0456 40 1 4.2245 3.4059 0.1816 41 1 4.6401 3.4512 -2.1355 42 1 5.2101 3.7036 -4.3876 43 1 5.5987 2.5618 -6.6332 44 1 4.9225 2.5874 -8.9996 45 1 3.0989 2.8309 -10.5799 46 1 1.6461 3.7689 -10.1586 47 1 2.1732 4.4994 -13.7296 48 1 1.4415 4.8364 -7.9901 49 1 2.1039 4.8079 -5.6199 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932560949.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:04 Heat of formation + Delta-G solvation = -63.802968 kcal Electronic energy + Delta-G solvation = -29672.934442 eV Core-core repulsion = 25598.632437 eV Total energy + Delta-G solvation = -4074.302006 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.10567 -41.20949 -39.68070 -37.57219 -36.86724 -36.10938 -35.01885 -34.13398 -32.17692 -31.75650 -31.00810 -29.88772 -28.23177 -25.74025 -25.19454 -24.34048 -23.78239 -22.82348 -22.42002 -21.60651 -20.07893 -19.34370 -18.64828 -18.48587 -17.84791 -17.62761 -17.17574 -16.75607 -16.40834 -15.96163 -15.92686 -15.61416 -15.29654 -15.13669 -14.88636 -14.70581 -14.57640 -14.48159 -14.31162 -14.25660 -13.66435 -13.44266 -13.29192 -13.16048 -13.09712 -12.84871 -12.59793 -12.51245 -12.45868 -12.23955 -12.07003 -11.96957 -11.81558 -11.69212 -11.55010 -11.29391 -11.15504 -10.87545 -10.59091 -10.08095 -9.75447 -9.70376 -8.84242 -8.16945 -6.32104 0.49771 0.58516 1.23519 1.39891 1.43762 1.51868 1.75053 1.95584 2.21855 2.41374 3.02160 3.11655 3.13574 3.51864 3.62717 3.82963 3.99945 4.05989 4.12637 4.17083 4.21484 4.32970 4.39086 4.45133 4.54773 4.60440 4.64151 4.66778 4.73379 4.79924 4.83458 4.98826 5.05797 5.07962 5.12055 5.20136 5.24133 5.29566 5.33397 5.35932 5.42634 5.51042 5.53637 5.62869 5.76359 5.91012 6.08793 6.13895 6.27147 6.44955 6.80092 6.95709 7.18086 7.35924 7.49832 8.90934 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.024261 B = 0.001918 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.815701 B =14595.744516 C =15088.607556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.099 3.901 3 N -0.599 5.599 4 C 0.102 3.898 5 C -0.129 4.129 6 C -0.118 4.118 7 C 0.155 3.845 8 H 0.096 0.904 9 N -0.711 5.711 10 C 0.702 3.298 11 O -0.606 6.606 12 N -0.667 5.667 13 C 0.137 3.863 14 C -0.129 4.129 15 C -0.113 4.113 16 C -0.077 4.077 17 C 0.058 3.942 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.281 1.281 25 H -0.269 1.269 26 C -0.122 4.122 27 C -0.124 4.124 28 C 0.487 3.513 29 O -0.585 6.585 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.021 0.979 33 H 0.053 0.947 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.067 0.933 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.097 0.903 41 H 0.418 0.582 42 H 0.424 0.576 43 H 0.158 0.842 44 H 0.128 0.872 45 H 0.006 0.994 46 H -0.003 1.003 47 H 0.265 0.735 48 H 0.108 0.892 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -3.271 39.515 40.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.023 4.023 3 N -0.332 5.332 4 C -0.019 4.019 5 C -0.167 4.167 6 C -0.156 4.156 7 C 0.046 3.954 8 H 0.114 0.886 9 N -0.368 5.368 10 C 0.403 3.597 11 O -0.484 6.484 12 N -0.316 5.316 13 C 0.043 3.957 14 C -0.150 4.150 15 C -0.132 4.132 16 C -0.077 4.077 17 C 0.021 3.979 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.197 4.197 21 N -0.572 5.572 22 Si 0.793 3.207 23 H -0.189 1.189 24 H -0.206 1.206 25 H -0.194 1.194 26 C -0.140 4.140 27 C -0.144 4.144 28 C 0.274 3.726 29 O -0.464 6.464 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.130 0.870 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.086 0.914 38 H 0.145 0.855 39 H 0.121 0.879 40 H 0.116 0.884 41 H 0.256 0.744 42 H 0.262 0.738 43 H 0.176 0.824 44 H 0.146 0.854 45 H 0.025 0.975 46 H 0.015 0.985 47 H 0.074 0.926 48 H 0.127 0.873 49 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.535 -3.605 38.660 39.220 hybrid contribution 0.346 0.368 -1.200 1.302 sum 5.881 -3.237 37.460 38.056 Atomic orbital electron populations 1.22044 0.95727 1.02826 1.01305 1.21542 0.94671 0.82736 1.03379 1.47613 1.64595 1.14617 1.06382 1.21820 1.03751 0.93443 0.82900 1.21911 1.00072 0.94329 1.00403 1.21999 1.00317 1.03862 0.89423 1.20796 0.93201 0.91726 0.89674 0.88592 1.44589 1.10425 1.78820 1.02942 1.16076 0.84701 0.77219 0.81710 1.90930 1.18174 1.57525 1.81783 1.42158 1.10053 1.76912 1.02476 1.17362 0.96364 0.99070 0.82927 1.21004 1.01736 1.00595 0.91637 1.20961 0.96124 1.00005 0.96075 1.20404 0.95168 0.95990 0.96188 1.18078 0.95149 0.96456 0.88209 1.21353 1.31617 1.08607 0.94915 0.92522 1.26000 0.95585 1.00061 0.98100 1.70093 1.39510 1.38524 1.09053 0.85436 0.79150 0.78971 0.77110 1.18872 1.20580 1.19424 1.20922 1.00076 1.00462 0.92572 1.21132 0.97806 1.00273 0.95209 1.21183 0.77605 0.90653 0.83197 1.90773 1.52716 1.65033 1.37873 0.90437 0.90663 0.95928 0.92821 0.86964 0.89197 0.88609 0.91385 0.85483 0.87912 0.88410 0.74356 0.73769 0.82416 0.85427 0.97542 0.98459 0.92594 0.87337 0.85673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.39 10.23 71.98 0.74 -1.66 16 2 C 0.10 1.46 5.94 86.38 0.51 1.97 16 3 N -0.60 -8.61 2.81 -826.65 -2.32 -10.93 16 4 C 0.10 0.38 6.32 86.49 0.55 0.93 16 5 C -0.13 -0.25 6.02 30.68 0.18 -0.06 16 6 C -0.12 -0.57 5.50 30.73 0.17 -0.40 16 7 C 0.16 2.69 2.70 44.10 0.12 2.81 16 8 H 0.10 2.15 7.58 -2.39 -0.02 2.13 16 9 N -0.71 -13.24 4.97 -462.09 -2.30 -15.54 16 10 C 0.70 20.75 7.83 179.05 1.40 22.15 16 11 O -0.61 -24.60 12.98 -2.28 -0.03 -24.63 16 12 N -0.67 -17.50 5.34 -317.19 -1.69 -19.20 16 13 C 0.14 4.82 6.30 38.15 0.24 5.06 16 14 C -0.13 -4.34 9.97 22.39 0.22 -4.12 16 15 C -0.11 -4.67 9.69 22.25 0.22 -4.45 16 16 C -0.08 -3.74 5.07 -19.85 -0.10 -3.84 16 17 C 0.06 3.33 5.10 29.10 0.15 3.48 16 18 C -0.53 -31.48 9.09 25.60 0.23 -31.25 16 19 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 20 C 0.00 0.02 5.46 84.66 0.46 0.48 16 21 N -0.93 -58.33 13.29 21.45 0.28 -58.04 16 22 Si 0.97 45.68 29.54 68.60 2.03 47.71 16 23 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 26 C -0.12 -5.64 9.69 22.25 0.22 -5.42 16 27 C -0.12 -5.14 8.70 22.39 0.19 -4.95 16 28 C 0.49 11.22 7.19 87.71 0.63 11.85 16 29 O -0.58 -20.95 14.92 -1.32 -0.02 -20.97 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.02 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.05 1.17 7.13 -2.39 -0.02 1.15 16 34 H 0.11 0.79 8.01 -2.39 -0.02 0.77 16 35 H 0.09 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.10 0.07 8.10 -2.39 -0.02 0.05 16 37 H 0.07 0.31 8.12 -2.39 -0.02 0.29 16 38 H 0.13 -0.51 8.14 -2.39 -0.02 -0.53 16 39 H 0.10 0.25 8.14 -2.39 -0.02 0.23 16 40 H 0.10 0.14 8.10 -2.39 -0.02 0.12 16 41 H 0.42 4.13 8.60 -92.71 -0.80 3.33 16 42 H 0.42 6.93 8.84 -92.70 -0.82 6.11 16 43 H 0.16 3.86 8.06 -2.91 -0.02 3.84 16 44 H 0.13 5.01 8.06 -2.91 -0.02 4.99 16 45 H 0.01 0.38 8.08 -2.39 -0.02 0.36 16 46 H 0.00 -0.18 8.08 -2.39 -0.02 -0.20 16 47 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 48 H 0.11 5.09 8.06 -2.91 -0.02 5.06 16 49 H 0.13 5.28 6.22 -2.91 -0.02 5.26 16 Total: -1.00 -92.08 401.92 1.43 -90.64 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.64 Total: 18.37 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 6.13 Total: -7.40 kcal Atomic # 7 Polarization: -97.68 SS G_CDS: -6.03 Total: -103.71 kcal Atomic # 8 Polarization: -45.55 SS G_CDS: -0.05 Total: -45.60 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -92.08 1.43 -90.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932560949.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.840 kcal (2) G-P(sol) polarization free energy of solvation -92.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds