Wall clock time and date at job start Wed Apr 1 2020 02:59:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47355 * 2 1 4 4 C 1.46765 * 124.34746 * 269.95088 * 3 2 1 5 5 C 1.54479 * 105.47344 * 197.03807 * 4 3 2 6 6 H 1.08999 * 111.00055 * 216.45660 * 5 4 3 7 7 C 1.53000 * 110.97014 * 92.70000 * 5 4 3 8 8 N 1.46503 * 109.46739 * 181.16712 * 7 5 4 9 9 C 1.34775 * 119.99755 * 180.02562 * 8 7 5 10 10 O 1.21595 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.39942 * 119.99711 * 175.38074 * 11 9 8 13 13 C 1.38870 * 120.06874 * 214.81310 * 12 11 9 14 14 C 1.38119 * 119.93137 * 179.76891 * 13 12 11 15 15 C 1.38280 * 120.06873 * 0.51053 * 14 13 12 16 16 C 1.50694 * 119.92927 * 179.76674 * 15 14 13 17 17 C 1.50709 * 109.47056 * 269.97616 * 16 15 14 18 18 H 1.08003 * 119.99564 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99800 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46911 * 90.00374 * 21 19 17 23 23 H 1.48497 * 109.46996 * 210.00191 * 21 19 17 24 24 H 1.48506 * 109.46961 * 330.00085 * 21 19 17 25 25 C 1.38281 * 120.13710 * 359.74229 * 15 14 13 26 26 C 1.38115 * 120.07530 * 0.02562 * 25 15 14 27 27 C 1.54628 * 101.76262 * 334.58261 * 5 4 3 28 28 C 1.34420 * 124.34965 * 89.97352 * 3 2 1 29 29 O 1.21274 * 124.94363 * 359.53641 * 28 3 2 30 30 H 1.08996 * 109.46697 * 300.00522 * 1 2 3 31 31 H 1.09002 * 109.46668 * 60.00009 * 1 2 3 32 32 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47209 * 239.99605 * 2 1 3 34 34 H 1.09002 * 109.46668 * 119.99991 * 2 1 3 35 35 H 1.08995 * 110.24567 * 78.03443 * 4 3 2 36 36 H 1.09003 * 110.24379 * 316.03444 * 4 3 2 37 37 H 1.08996 * 109.47460 * 301.16931 * 7 5 4 38 38 H 1.08994 * 109.46627 * 61.17232 * 7 5 4 39 39 H 0.96994 * 120.00500 * 0.02562 * 8 7 5 40 40 H 0.96996 * 119.99625 * 355.38201 * 11 9 8 41 41 H 1.08002 * 120.03061 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.96265 * 180.25091 * 14 13 12 43 43 H 1.09004 * 109.47160 * 29.97498 * 16 15 14 44 44 H 1.08998 * 109.47480 * 149.97757 * 16 15 14 45 45 H 0.96997 * 119.99338 * 179.97438 * 20 19 17 46 46 H 1.08001 * 119.95973 * 180.02562 * 25 15 14 47 47 H 1.07990 * 120.03604 * 180.02562 * 26 25 15 48 48 H 1.09002 * 110.48890 * 143.47778 * 27 5 4 49 49 H 1.09001 * 110.49112 * 266.11708 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1615 -1.2117 5 6 3.1757 3.3435 -0.7485 6 1 2.9331 4.2512 -1.3010 7 6 4.6617 3.0049 -0.8823 8 7 5.4646 4.1353 -0.4090 9 6 6.8102 4.0631 -0.4334 10 8 7.3578 3.0596 -0.8477 11 7 7.5489 5.1028 0.0025 12 6 8.9424 4.9922 0.0681 13 6 9.6435 5.6263 1.0853 14 6 11.0184 5.5114 1.1501 15 6 11.6977 4.7745 0.1974 16 6 13.1983 4.6555 0.2681 17 6 13.8287 5.7781 -0.5153 18 1 13.2050 6.5048 -1.0147 19 6 15.2016 5.8775 -0.5943 20 7 15.9610 4.9923 0.0135 21 14 15.9830 7.2686 -1.5658 22 1 16.1985 8.4356 -0.6731 23 1 17.2871 6.8176 -2.1145 24 1 15.0844 7.6584 -2.6821 25 6 11.0029 4.1462 -0.8198 26 6 9.6275 4.2533 -0.8874 27 6 2.7698 3.4753 0.7377 28 6 2.2708 2.0964 1.1098 29 8 2.1198 1.6950 2.2442 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3652 2.5305 -1.6436 36 1 2.8338 1.5523 -1.9378 37 1 4.8886 2.1224 -0.2842 38 1 4.8961 2.8053 -1.9279 39 1 5.0278 4.9356 -0.0782 40 1 7.1145 5.9275 0.2707 41 1 9.1139 6.2054 1.8273 42 1 11.5638 6.0010 1.9433 43 1 13.5188 4.7136 1.3083 44 1 13.5073 3.6995 -0.1545 45 1 16.9268 5.0621 -0.0425 46 1 11.5363 3.5710 -1.5621 47 1 9.0855 3.7620 -1.6818 48 1 3.6327 3.7457 1.3463 49 1 1.9750 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932564264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:36 Heat of formation + Delta-G solvation = -42.122024 kcal Electronic energy + Delta-G solvation = -28725.857898 eV Core-core repulsion = 24652.496048 eV Total energy + Delta-G solvation = -4073.361849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.17360 -40.39018 -38.40193 -37.21283 -35.71677 -34.79726 -33.76303 -32.92539 -30.70012 -30.25043 -29.96062 -28.60052 -26.91140 -25.78232 -23.81740 -23.21065 -22.31634 -21.47538 -21.23500 -20.16660 -19.80773 -18.51181 -17.61765 -17.30413 -16.47092 -16.27299 -16.10349 -15.73595 -15.48120 -14.91343 -14.68086 -14.62676 -14.38777 -14.19523 -14.04609 -13.88894 -13.63472 -13.43783 -13.05465 -12.92964 -12.77470 -12.58281 -12.47305 -12.25280 -12.05495 -11.92013 -11.67931 -11.50261 -11.36334 -11.24809 -10.82075 -10.61555 -10.38007 -10.20709 -10.14506 -9.85393 -9.44214 -9.38990 -9.24574 -9.20840 -8.39508 -8.23593 -7.33533 -6.00750 -4.04753 1.97910 2.11773 2.15669 2.42153 2.54543 3.14694 3.32047 3.38296 3.42519 3.73841 3.76858 3.97914 4.10672 4.31866 4.41389 4.52751 4.60701 4.65252 4.74570 4.85389 4.91946 4.95005 5.08115 5.13801 5.20839 5.32421 5.33236 5.38040 5.46078 5.50908 5.63136 5.64794 5.97136 6.04472 6.06112 6.09663 6.19741 6.24949 6.55462 6.62299 6.71198 6.97627 7.05252 7.21547 7.26445 7.55713 7.73225 7.76576 7.84427 7.91415 7.95113 8.35942 8.47562 9.00640 9.58815 11.08809 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001576 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.730118 B =17758.991367 C =17772.632038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.120 3.880 3 N -0.621 5.621 4 C 0.111 3.889 5 C -0.114 4.114 6 H 0.108 0.892 7 C 0.147 3.853 8 N -0.747 5.747 9 C 0.702 3.298 10 O -0.570 6.570 11 N -0.680 5.680 12 C 0.119 3.881 13 C -0.144 4.144 14 C -0.109 4.109 15 C -0.043 4.043 16 C 0.047 3.953 17 C -0.511 4.511 18 H 0.057 0.943 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.155 4.155 28 C 0.518 3.482 29 O -0.529 6.529 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.396 0.604 40 H 0.401 0.599 41 H 0.113 0.887 42 H 0.122 0.878 43 H 0.028 0.972 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.120 0.880 47 H 0.129 0.871 48 H 0.106 0.894 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.652 -3.048 -2.887 33.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.001 4.001 3 N -0.356 5.356 4 C -0.012 4.012 5 C -0.133 4.133 6 H 0.126 0.874 7 C 0.022 3.978 8 N -0.404 5.404 9 C 0.402 3.598 10 O -0.446 6.446 11 N -0.327 5.327 12 C 0.026 3.974 13 C -0.165 4.165 14 C -0.127 4.127 15 C -0.044 4.044 16 C 0.011 3.989 17 C -0.549 4.549 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.533 5.533 21 Si 0.723 3.277 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.198 1.198 25 C -0.128 4.128 26 C -0.136 4.136 27 C -0.195 4.195 28 C 0.305 3.695 29 O -0.405 6.405 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.230 0.770 40 H 0.235 0.765 41 H 0.131 0.869 42 H 0.140 0.860 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.139 0.861 47 H 0.147 0.853 48 H 0.124 0.876 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -33.117 -4.367 -2.644 33.508 hybrid contribution -0.003 1.592 -0.284 1.617 sum -33.121 -2.775 -2.928 33.366 Atomic orbital electron populations 1.22157 0.95693 1.02504 1.02376 1.21376 0.94381 0.80900 1.03462 1.48339 1.66141 1.13950 1.07166 1.22049 0.99194 0.92355 0.87629 1.22443 0.94698 0.99813 0.96347 0.87390 1.21157 0.87129 0.88822 1.00645 1.45022 1.04537 1.20111 1.70757 1.15900 0.81202 0.83530 0.79141 1.90961 1.70655 1.31271 1.51732 1.42418 1.05514 1.15576 1.69213 1.17292 0.80182 1.03095 0.96809 1.20722 0.94840 1.03599 0.97329 1.20862 0.92556 0.99545 0.99768 1.20709 0.98777 0.92579 0.92347 1.18351 0.84566 0.97903 0.98115 1.21080 0.91132 1.10994 1.31698 0.92454 1.25014 0.97321 0.96257 0.95763 1.69962 1.04685 1.35231 1.43444 0.86544 0.78674 0.82225 0.80295 1.20634 1.21196 1.19834 1.21015 0.92812 1.00232 0.98722 1.21141 0.94141 1.00081 0.98261 1.22485 1.03870 0.96296 0.96840 1.20868 0.76623 0.87562 0.84398 1.90746 1.53367 1.75256 1.21152 0.92269 0.92427 0.91300 0.90116 0.89900 0.90302 0.89588 0.91269 0.90599 0.77011 0.76470 0.86898 0.86046 0.95334 0.95298 0.92882 0.86150 0.85277 0.87605 0.87353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.80 10.24 37.16 0.38 -0.42 16 2 C 0.12 0.67 6.65 -4.04 -0.03 0.65 16 3 N -0.62 -3.91 2.93 -172.41 -0.51 -4.41 16 4 C 0.11 0.36 6.90 -3.12 -0.02 0.34 16 5 C -0.11 -0.37 3.22 -88.99 -0.29 -0.66 16 6 H 0.11 0.12 8.14 -51.93 -0.42 -0.31 16 7 C 0.15 0.97 5.02 -4.04 -0.02 0.95 16 8 N -0.75 -5.68 5.11 -65.22 -0.33 -6.02 16 9 C 0.70 8.95 8.41 -86.92 -0.73 8.22 16 10 O -0.57 -9.87 13.78 5.28 0.07 -9.80 16 11 N -0.68 -8.30 5.34 -14.22 -0.08 -8.37 16 12 C 0.12 1.96 6.30 -83.69 -0.53 1.44 16 13 C -0.14 -2.37 9.97 -39.39 -0.39 -2.76 16 14 C -0.11 -2.12 9.69 -39.61 -0.38 -2.50 16 15 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 16 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 17 C -0.51 -14.40 9.09 -34.44 -0.31 -14.72 16 18 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 21 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 22 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C -0.11 -2.27 9.69 -39.61 -0.38 -2.65 16 26 C -0.12 -2.18 8.70 -39.39 -0.34 -2.53 16 27 C -0.15 -0.77 6.24 -26.74 -0.17 -0.94 16 28 C 0.52 4.60 8.02 -10.86 -0.09 4.52 16 29 O -0.53 -7.16 17.60 5.56 0.10 -7.07 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 0.60 7.93 -51.93 -0.41 0.18 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 36 H 0.09 0.22 7.91 -51.93 -0.41 -0.20 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.40 1.70 8.21 -40.82 -0.34 1.37 16 40 H 0.40 3.30 8.84 -40.82 -0.36 2.94 16 41 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 42 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 43 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 44 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 47 H 0.13 2.43 6.22 -52.49 -0.33 2.10 16 48 H 0.11 0.61 7.40 -51.93 -0.38 0.22 16 49 H 0.11 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 408.84 15.07 6.16 6.16 Total: -1.00 -37.30 408.84 -10.63 -47.93 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -7.68 Total: 0.78 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -4.08 Total: -9.92 kcal Atomic # 7 Polarization: -44.49 SS G_CDS: -0.18 Total: -44.67 kcal Atomic # 8 Polarization: -17.03 SS G_CDS: 0.17 Total: -16.86 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.30 -10.63 -47.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.810 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds