Wall clock time and date at job start Wed Apr 1 2020 02:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46500 * 109.47355 * 2 1 4 4 C 1.46765 * 124.34746 * 269.95088 * 3 2 1 5 5 C 1.54479 * 105.47344 * 197.03807 * 4 3 2 6 6 H 1.08999 * 111.00055 * 216.45660 * 5 4 3 7 7 C 1.53000 * 110.97014 * 92.70000 * 5 4 3 8 8 N 1.46503 * 109.46739 * 181.16712 * 7 5 4 9 9 C 1.34775 * 119.99755 * 180.02562 * 8 7 5 10 10 O 1.21595 * 119.99936 * 359.97438 * 9 8 7 11 11 N 1.34781 * 120.00091 * 180.02562 * 9 8 7 12 12 C 1.39942 * 119.99711 * 175.38074 * 11 9 8 13 13 C 1.38870 * 120.06874 * 214.81310 * 12 11 9 14 14 C 1.38119 * 119.93137 * 179.76891 * 13 12 11 15 15 C 1.38280 * 120.06873 * 0.51053 * 14 13 12 16 16 C 1.50694 * 119.92927 * 179.76674 * 15 14 13 17 17 C 1.50709 * 109.47056 * 269.97616 * 16 15 14 18 18 H 1.08003 * 119.99564 * 359.97438 * 17 16 15 19 19 C 1.37874 * 119.99800 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00101 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 119.99748 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46911 * 90.00374 * 21 19 17 23 23 H 1.48497 * 109.46996 * 210.00191 * 21 19 17 24 24 H 1.48506 * 109.46961 * 330.00085 * 21 19 17 25 25 C 1.38281 * 120.13710 * 359.74229 * 15 14 13 26 26 C 1.38115 * 120.07530 * 0.02562 * 25 15 14 27 27 C 1.54628 * 101.76262 * 334.58261 * 5 4 3 28 28 C 1.34420 * 124.34965 * 89.97352 * 3 2 1 29 29 O 1.21274 * 124.94363 * 359.53641 * 28 3 2 30 30 H 1.08996 * 109.46697 * 300.00522 * 1 2 3 31 31 H 1.09002 * 109.46668 * 60.00009 * 1 2 3 32 32 H 1.09002 * 109.47009 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.47209 * 239.99605 * 2 1 3 34 34 H 1.09002 * 109.46668 * 119.99991 * 2 1 3 35 35 H 1.08995 * 110.24567 * 78.03443 * 4 3 2 36 36 H 1.09003 * 110.24379 * 316.03444 * 4 3 2 37 37 H 1.08996 * 109.47460 * 301.16931 * 7 5 4 38 38 H 1.08994 * 109.46627 * 61.17232 * 7 5 4 39 39 H 0.96994 * 120.00500 * 0.02562 * 8 7 5 40 40 H 0.96996 * 119.99625 * 355.38201 * 11 9 8 41 41 H 1.08002 * 120.03061 * 0.02562 * 13 12 11 42 42 H 1.08000 * 119.96265 * 180.25091 * 14 13 12 43 43 H 1.09004 * 109.47160 * 29.97498 * 16 15 14 44 44 H 1.08998 * 109.47480 * 149.97757 * 16 15 14 45 45 H 0.96997 * 119.99338 * 179.97438 * 20 19 17 46 46 H 1.08001 * 119.95973 * 180.02562 * 25 15 14 47 47 H 1.07990 * 120.03604 * 180.02562 * 26 25 15 48 48 H 1.09002 * 110.48890 * 143.47778 * 27 5 4 49 49 H 1.09001 * 110.49112 * 266.11708 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2955 2.1615 -1.2117 5 6 3.1757 3.3435 -0.7485 6 1 2.9331 4.2512 -1.3010 7 6 4.6617 3.0049 -0.8823 8 7 5.4646 4.1353 -0.4090 9 6 6.8102 4.0631 -0.4334 10 8 7.3578 3.0596 -0.8477 11 7 7.5489 5.1028 0.0025 12 6 8.9424 4.9922 0.0681 13 6 9.6435 5.6263 1.0853 14 6 11.0184 5.5114 1.1501 15 6 11.6977 4.7745 0.1974 16 6 13.1983 4.6555 0.2681 17 6 13.8287 5.7781 -0.5153 18 1 13.2050 6.5048 -1.0147 19 6 15.2016 5.8775 -0.5943 20 7 15.9610 4.9923 0.0135 21 14 15.9830 7.2686 -1.5658 22 1 16.1985 8.4356 -0.6731 23 1 17.2871 6.8176 -2.1145 24 1 15.0844 7.6584 -2.6821 25 6 11.0029 4.1462 -0.8198 26 6 9.6275 4.2533 -0.8874 27 6 2.7698 3.4753 0.7377 28 6 2.2708 2.0964 1.1098 29 8 2.1198 1.6950 2.2442 30 1 -0.3632 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.3652 2.5305 -1.6436 36 1 2.8338 1.5523 -1.9378 37 1 4.8886 2.1224 -0.2842 38 1 4.8961 2.8053 -1.9279 39 1 5.0278 4.9356 -0.0782 40 1 7.1145 5.9275 0.2707 41 1 9.1139 6.2054 1.8273 42 1 11.5638 6.0010 1.9433 43 1 13.5188 4.7136 1.3083 44 1 13.5073 3.6995 -0.1545 45 1 16.9268 5.0621 -0.0425 46 1 11.5363 3.5710 -1.5621 47 1 9.0855 3.7620 -1.6818 48 1 3.6327 3.7457 1.3463 49 1 1.9750 4.2124 0.8523 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932564264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:34 Heat of formation + Delta-G solvation = -67.611253 kcal Electronic energy + Delta-G solvation = -28726.963194 eV Core-core repulsion = 24652.496048 eV Total energy + Delta-G solvation = -4074.467145 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.83110 -41.35869 -39.74520 -37.93541 -36.50599 -36.05813 -34.99560 -34.28911 -32.17710 -31.72728 -30.71546 -29.11257 -28.38626 -26.66330 -25.00602 -24.24716 -23.77563 -22.47374 -21.92892 -21.53017 -20.40099 -19.46058 -18.63083 -18.47116 -17.88948 -17.13766 -16.91283 -16.71883 -16.46685 -16.27798 -15.90985 -15.79843 -15.34216 -14.98856 -14.89065 -14.59238 -14.52136 -14.48001 -14.25607 -14.10202 -13.94919 -13.64691 -13.42941 -13.26715 -13.12514 -12.92062 -12.63628 -12.59604 -12.45718 -12.40092 -12.10707 -12.03678 -11.89968 -11.67744 -11.53081 -11.23050 -10.86575 -10.85235 -10.58591 -10.15660 -9.74019 -9.72624 -8.80977 -8.16307 -6.31532 0.51986 0.61287 1.41048 1.42656 1.50158 1.54098 1.60436 2.07311 2.09297 2.41902 3.04316 3.12632 3.15154 3.36319 3.50820 3.64823 3.94054 4.09074 4.11940 4.20219 4.26031 4.39691 4.41892 4.47158 4.58733 4.64150 4.66096 4.69586 4.70746 4.74267 4.79097 4.84091 4.88816 4.97132 5.13450 5.16552 5.25041 5.33206 5.35235 5.41179 5.45413 5.53374 5.60763 5.65788 5.77862 5.99334 6.11872 6.12985 6.15616 6.29428 6.81296 7.02858 7.13688 7.37010 7.51571 8.91465 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.030436 B = 0.001576 C = 0.001575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.730118 B =17758.991367 C =17772.632038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 N -0.620 5.620 4 C 0.107 3.893 5 C -0.094 4.094 6 H 0.149 0.851 7 C 0.145 3.855 8 N -0.722 5.722 9 C 0.697 3.303 10 O -0.619 6.619 11 N -0.667 5.667 12 C 0.137 3.863 13 C -0.129 4.129 14 C -0.114 4.114 15 C -0.078 4.078 16 C 0.057 3.943 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.003 3.997 20 N -0.932 5.932 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.266 1.266 25 C -0.122 4.122 26 C -0.123 4.123 27 C -0.148 4.148 28 C 0.499 3.501 29 O -0.592 6.592 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.109 0.891 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.078 0.922 39 H 0.417 0.583 40 H 0.425 0.575 41 H 0.159 0.841 42 H 0.125 0.875 43 H 0.006 0.994 44 H -0.002 1.002 45 H 0.265 0.735 46 H 0.108 0.892 47 H 0.128 0.872 48 H 0.098 0.902 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.731 -0.316 -4.365 36.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.009 4.009 3 N -0.353 5.353 4 C -0.016 4.016 5 C -0.113 4.113 6 H 0.166 0.834 7 C 0.021 3.979 8 N -0.379 5.379 9 C 0.397 3.603 10 O -0.499 6.499 11 N -0.316 5.316 12 C 0.042 3.958 13 C -0.149 4.149 14 C -0.133 4.133 15 C -0.078 4.078 16 C 0.020 3.980 17 C -0.566 4.566 18 H 0.075 0.925 19 C -0.195 4.195 20 N -0.572 5.572 21 Si 0.792 3.208 22 H -0.194 1.194 23 H -0.207 1.207 24 H -0.190 1.190 25 C -0.141 4.141 26 C -0.143 4.143 27 C -0.187 4.187 28 C 0.288 3.712 29 O -0.473 6.473 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.255 0.745 40 H 0.264 0.736 41 H 0.177 0.823 42 H 0.143 0.857 43 H 0.024 0.976 44 H 0.016 0.984 45 H 0.074 0.926 46 H 0.126 0.874 47 H 0.146 0.854 48 H 0.117 0.883 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -36.281 -1.587 -4.152 36.552 hybrid contribution 0.804 0.640 0.169 1.041 sum -35.478 -0.947 -3.983 35.713 Atomic orbital electron populations 1.22080 0.94799 1.03108 1.01888 1.21477 0.95130 0.80949 1.03309 1.48553 1.64783 1.14133 1.07824 1.22353 1.00679 0.92123 0.86399 1.22420 0.91866 1.01453 0.95514 0.83367 1.21258 0.89163 0.87500 1.00009 1.44817 1.02649 1.21163 1.69279 1.16141 0.82611 0.82814 0.78728 1.90945 1.71974 1.33150 1.53788 1.42201 1.03724 1.16730 1.68930 1.17339 0.82237 1.00856 0.95355 1.21016 0.93456 1.02810 0.97601 1.20958 0.94177 0.99053 0.99071 1.20401 0.96570 0.95937 0.94920 1.18090 0.87868 0.95977 0.96085 1.21408 0.91747 1.11485 1.31947 0.92518 1.25959 0.97869 0.98955 0.96722 1.70095 1.05077 1.37180 1.44811 0.85408 0.77621 0.78891 0.78899 1.19426 1.20652 1.19015 1.20928 0.93942 1.00687 0.98515 1.21146 0.93147 1.00841 0.99213 1.22509 1.04271 0.94297 0.97658 1.21670 0.76170 0.89288 0.84035 1.90702 1.56217 1.76798 1.23587 0.94612 0.90832 0.90267 0.87792 0.92541 0.87348 0.88522 0.94237 0.90423 0.74512 0.73628 0.82318 0.85665 0.97593 0.98388 0.92628 0.87398 0.85396 0.88326 0.84712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.24 71.98 0.74 -0.63 16 2 C 0.11 1.21 6.65 86.38 0.57 1.78 16 3 N -0.62 -6.95 2.93 -817.99 -2.40 -9.35 16 4 C 0.11 0.30 6.90 86.83 0.60 0.89 16 5 C -0.09 -0.23 3.22 -9.74 -0.03 -0.26 16 6 H 0.15 -0.66 8.14 -2.39 -0.02 -0.68 16 7 C 0.14 1.53 5.02 86.38 0.43 1.96 16 8 N -0.72 -8.57 5.11 -478.53 -2.45 -11.01 16 9 C 0.70 16.09 8.41 179.05 1.51 17.59 16 10 O -0.62 -20.93 13.78 -4.02 -0.06 -20.99 16 11 N -0.67 -14.01 5.34 -317.16 -1.69 -15.71 16 12 C 0.14 4.21 6.30 38.15 0.24 4.45 16 13 C -0.13 -3.86 9.97 22.39 0.22 -3.64 16 14 C -0.11 -4.39 9.69 22.25 0.22 -4.18 16 15 C -0.08 -3.58 5.07 -19.85 -0.10 -3.68 16 16 C 0.06 3.15 5.10 29.10 0.15 3.30 16 17 C -0.53 -30.77 9.09 25.60 0.23 -30.53 16 18 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 19 C 0.00 0.17 5.46 84.65 0.46 0.63 16 20 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 21 Si 0.97 44.70 29.54 68.60 2.03 46.73 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.12 -5.28 9.69 22.25 0.22 -5.06 16 26 C -0.12 -4.62 8.70 22.39 0.19 -4.42 16 27 C -0.15 -1.06 6.24 30.59 0.19 -0.87 16 28 C 0.50 8.63 8.02 87.90 0.71 9.33 16 29 O -0.59 -16.87 17.60 -3.01 -0.05 -16.92 16 30 H 0.03 0.47 8.14 -2.39 -0.02 0.46 16 31 H 0.07 0.39 8.14 -2.39 -0.02 0.38 16 32 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.06 0.90 7.93 -2.39 -0.02 0.88 16 35 H 0.11 -0.21 8.14 -2.39 -0.02 -0.23 16 36 H 0.10 0.13 7.91 -2.39 -0.02 0.12 16 37 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.42 1.61 8.21 -92.71 -0.76 0.85 16 40 H 0.42 4.93 8.84 -92.71 -0.82 4.11 16 41 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 42 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 43 H 0.01 0.34 8.08 -2.38 -0.02 0.32 16 44 H 0.00 -0.13 8.08 -2.39 -0.02 -0.15 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 47 H 0.13 4.84 6.22 -2.92 -0.02 4.82 16 48 H 0.10 0.89 7.40 -2.39 -0.02 0.87 16 49 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 Total: -1.00 -88.43 408.84 1.60 -86.83 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -0.61 Total: 10.62 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: 6.55 Total: -13.33 kcal Atomic # 7 Polarization: -86.68 SS G_CDS: -6.26 Total: -92.94 kcal Atomic # 8 Polarization: -37.80 SS G_CDS: -0.11 Total: -37.91 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -88.43 1.60 -86.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932564264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.223 kcal (2) G-P(sol) polarization free energy of solvation -88.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds