Wall clock time and date at job start Wed Apr 1 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99565 * 2 1 4 4 N 1.34781 * 119.99829 * 179.71874 * 2 1 3 5 5 C 1.46925 * 120.63088 * 0.02562 * 4 2 1 6 6 C 1.53626 * 108.54431 * 126.36601 * 5 4 2 7 7 C 1.53041 * 109.23999 * 54.85145 * 6 5 4 8 8 N 1.46504 * 109.44639 * 178.49619 * 7 6 5 9 9 C 1.34776 * 120.00367 * 275.06411 * 8 7 6 10 10 O 1.21584 * 119.99629 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00221 * 180.02562 * 9 8 7 12 12 C 1.39940 * 120.00260 * 174.68690 * 11 9 8 13 13 C 1.38870 * 120.06921 * 326.56854 * 12 11 9 14 14 C 1.38111 * 119.92826 * 179.77065 * 13 12 11 15 15 C 1.38280 * 120.06871 * 0.49892 * 14 13 12 16 16 C 1.50706 * 119.92800 * 179.72599 * 15 14 13 17 17 C 1.50698 * 109.47256 * 270.02484 * 16 15 14 18 18 H 1.08003 * 119.99831 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00299 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00468 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99783 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46901 * 90.00026 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99816 * 21 19 17 24 24 H 1.48496 * 109.47194 * 330.00075 * 21 19 17 25 25 C 1.38272 * 120.14427 * 359.75268 * 15 14 13 26 26 C 1.38118 * 120.06935 * 359.97438 * 25 15 14 27 27 C 1.53036 * 109.53896 * 298.51161 * 7 6 5 28 28 C 1.46928 * 120.62548 * 180.27604 * 4 2 1 29 29 H 1.08999 * 109.47396 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47135 * 120.00227 * 1 2 3 31 31 H 1.08997 * 109.47478 * 240.00017 * 1 2 3 32 32 H 1.08997 * 109.58415 * 246.19802 * 5 4 2 33 33 H 1.09004 * 109.58467 * 6.62310 * 5 4 2 34 34 H 1.09003 * 109.63340 * 294.86722 * 6 5 4 35 35 H 1.08997 * 109.43077 * 174.72117 * 6 5 4 36 36 H 1.08997 * 109.45965 * 58.53407 * 7 6 5 37 37 H 0.97000 * 119.99447 * 95.06350 * 8 7 6 38 38 H 0.97001 * 119.99873 * 354.68454 * 11 9 8 39 39 H 1.08004 * 120.03452 * 359.97438 * 13 12 11 40 40 H 1.08005 * 119.96629 * 180.25365 * 14 13 12 41 41 H 1.09002 * 109.47221 * 30.02537 * 16 15 14 42 42 H 1.09001 * 109.47242 * 150.02302 * 16 15 14 43 43 H 0.97001 * 120.00274 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.96735 * 180.02562 * 25 15 14 45 45 H 1.07996 * 120.03717 * 179.97438 * 26 25 15 46 46 H 1.08996 * 109.50157 * 301.41589 * 27 7 6 47 47 H 1.09004 * 109.52576 * 181.33009 * 27 7 6 48 48 H 1.09000 * 109.58648 * 353.37539 * 28 4 2 49 49 H 1.08998 * 109.58013 * 113.66196 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4602 -2.4476 0.0114 6 6 1.9737 -3.3025 -1.1572 7 6 3.4946 -3.4371 -1.0535 8 7 3.9852 -4.2814 -2.1457 9 6 3.9854 -5.6226 -2.0128 10 8 3.5790 -6.1318 -0.9862 11 7 4.4372 -6.3992 -3.0173 12 6 4.5419 -7.7832 -2.8389 13 6 4.8690 -8.3014 -1.5927 14 6 4.9669 -9.6680 -1.4188 15 6 4.7499 -10.5196 -2.4865 16 6 4.8637 -12.0101 -2.2946 17 6 6.2821 -12.4440 -2.5608 18 1 7.0268 -11.7135 -2.8404 19 6 6.6294 -13.7733 -2.4462 20 7 7.8674 -14.1520 -2.6780 21 14 5.3418 -15.0365 -1.9604 22 1 4.6861 -15.5697 -3.1815 23 1 5.9931 -16.1486 -1.2226 24 1 4.3228 -14.3955 -1.0911 25 6 4.4292 -10.0066 -3.7298 26 6 4.3242 -8.6411 -3.9090 27 6 4.1388 -2.0523 -1.1507 28 6 3.6500 -1.1833 0.0119 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 1.6419 -2.9649 0.9535 33 1 0.3921 -2.2663 -0.1083 34 1 1.7144 -2.8247 -2.1020 35 1 1.5170 -4.2911 -1.1114 36 1 3.7545 -3.8922 -0.0978 37 1 4.3098 -3.8750 -2.9645 38 1 4.6897 -5.9988 -3.8640 39 1 5.0433 -7.6366 -0.7596 40 1 5.2172 -10.0719 -0.4489 41 1 4.5914 -12.2665 -1.2708 42 1 4.1924 -12.5179 -2.9871 43 1 8.1116 -15.0873 -2.5978 44 1 4.2599 -10.6744 -4.5617 45 1 4.0741 -8.2410 -4.8804 46 1 3.8591 -1.5864 -2.0955 47 1 5.2232 -2.1506 -1.1005 48 1 4.0271 -0.1676 -0.1075 49 1 4.0068 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932583890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:00 Heat of formation + Delta-G solvation = -41.644197 kcal Electronic energy + Delta-G solvation = -29051.982796 eV Core-core repulsion = 24978.641666 eV Total energy + Delta-G solvation = -4073.341129 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.95210 -40.31167 -38.68629 -37.68315 -35.19572 -34.77584 -33.01933 -32.38573 -31.55665 -30.56579 -30.33816 -29.68507 -27.05770 -25.19373 -23.87635 -23.05025 -22.39343 -21.60079 -21.02902 -20.15146 -19.62030 -18.45734 -17.80867 -17.21363 -16.75702 -16.35918 -16.03573 -15.91020 -15.43433 -14.93024 -14.83218 -14.61588 -14.37774 -14.10088 -14.04650 -13.77669 -13.67442 -13.25551 -13.09547 -12.88667 -12.67496 -12.61967 -12.45494 -12.39855 -12.36935 -11.82751 -11.65700 -11.63698 -11.45035 -11.11636 -10.86494 -10.50870 -10.32159 -10.28550 -10.17444 -9.94254 -9.58636 -9.40824 -9.29056 -9.19778 -8.57521 -8.33277 -7.39023 -6.06637 -4.05528 1.88195 2.01857 2.14598 2.43349 2.51287 3.09022 3.29321 3.37330 3.40804 3.93027 4.04838 4.19358 4.29917 4.42481 4.45220 4.48335 4.58962 4.71839 4.73493 4.85457 4.89160 4.94634 5.18274 5.25146 5.29385 5.29759 5.31081 5.38187 5.44902 5.51165 5.56552 5.71162 5.86812 5.96767 5.98365 6.00913 6.12834 6.17910 6.50038 6.58082 6.83615 6.87914 6.96728 6.98509 7.06068 7.09551 7.60136 7.62308 7.68641 7.72922 7.80217 8.42753 8.50805 8.98825 9.53918 11.06286 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.001646 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.953430 B =17001.972336 C =17180.780872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.616 5.616 5 C 0.109 3.891 6 C -0.147 4.147 7 C 0.165 3.835 8 N -0.743 5.743 9 C 0.702 3.298 10 O -0.571 6.571 11 N -0.682 5.682 12 C 0.128 3.872 13 C -0.116 4.116 14 C -0.104 4.104 15 C -0.041 4.041 16 C 0.014 3.986 17 C -0.512 4.512 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.901 5.901 21 Si 0.878 3.122 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.264 1.264 25 C -0.104 4.104 26 C -0.145 4.145 27 C -0.141 4.141 28 C 0.114 3.886 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.093 0.907 37 H 0.396 0.604 38 H 0.401 0.599 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.098 0.902 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.994 27.825 1.529 31.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.303 3.697 3 O -0.426 6.426 4 N -0.350 5.350 5 C -0.014 4.014 6 C -0.187 4.187 7 C 0.060 3.940 8 N -0.398 5.398 9 C 0.403 3.597 10 O -0.447 6.447 11 N -0.328 5.328 12 C 0.034 3.966 13 C -0.136 4.136 14 C -0.123 4.123 15 C -0.042 4.042 16 C -0.023 4.023 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.539 5.539 21 Si 0.705 3.295 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.189 1.189 25 C -0.123 4.123 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.009 4.009 29 H 0.110 0.890 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.229 0.771 38 H 0.236 0.764 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.132 0.868 46 H 0.091 0.909 47 H 0.103 0.897 48 H 0.116 0.884 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -13.921 27.811 2.504 31.201 hybrid contribution -0.211 -0.526 -0.764 0.951 sum -14.132 27.285 1.740 30.776 Atomic orbital electron populations 1.21955 0.91695 1.05523 1.04277 1.20848 0.90730 0.82928 0.75238 1.90718 1.70810 1.31066 1.50053 1.48235 1.06957 1.06241 1.73586 1.21876 0.96959 0.83344 0.99223 1.22445 0.96407 1.01123 0.98697 1.20765 0.92684 0.89412 0.91184 1.45190 1.69961 1.04413 1.20279 1.15926 0.78614 0.81201 0.83955 1.90958 1.52378 1.72781 1.28561 1.42495 1.68433 1.05854 1.16065 1.17292 1.03376 0.80478 0.95410 1.20991 1.00752 0.95565 0.96311 1.20960 0.99870 0.92085 0.99348 1.20287 0.93760 0.97755 0.92352 1.18802 0.98342 0.87748 0.97371 1.20950 0.93012 0.93956 1.47091 0.90816 1.24999 0.95217 0.98340 0.94720 1.69901 1.17516 1.16870 1.49635 0.86807 0.82178 0.81314 0.79238 1.20204 1.21283 1.18879 1.20833 1.00381 0.93662 0.97433 1.20696 1.04921 0.93422 0.97554 1.22203 1.01439 0.94479 0.99879 1.21530 0.79452 1.01836 0.98050 0.88969 0.89287 0.89239 0.90483 0.89089 0.91252 0.89573 0.88883 0.77083 0.76413 0.85649 0.86040 0.95396 0.95863 0.92638 0.85947 0.86755 0.90868 0.89667 0.88409 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.72 8.67 36.00 0.31 -0.41 16 2 C 0.51 4.07 7.81 -10.98 -0.09 3.98 16 3 O -0.55 -6.67 16.50 5.56 0.09 -6.58 16 4 N -0.62 -3.93 2.97 -172.52 -0.51 -4.44 16 5 C 0.11 0.52 6.37 -3.49 -0.02 0.50 16 6 C -0.15 -0.90 5.67 -26.38 -0.15 -1.05 16 7 C 0.16 1.14 2.41 -67.89 -0.16 0.97 16 8 N -0.74 -5.68 5.08 -58.64 -0.30 -5.98 16 9 C 0.70 8.46 8.27 -86.93 -0.72 7.74 16 10 O -0.57 -9.15 13.70 5.29 0.07 -9.08 16 11 N -0.68 -7.96 5.35 -14.23 -0.08 -8.04 16 12 C 0.13 2.01 6.28 -83.69 -0.53 1.48 16 13 C -0.12 -2.08 8.65 -39.39 -0.34 -2.42 16 14 C -0.10 -2.06 9.69 -39.61 -0.38 -2.44 16 15 C -0.04 -0.86 5.07 -104.59 -0.53 -1.39 16 16 C 0.01 0.35 4.17 -29.03 -0.12 0.23 16 17 C -0.51 -14.48 9.65 -34.44 -0.33 -14.81 16 18 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 19 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 20 N -0.90 -27.50 13.96 55.43 0.77 -26.73 16 21 Si 0.88 21.34 27.47 -169.99 -4.67 16.68 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 24 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 25 C -0.10 -1.93 9.69 -39.61 -0.38 -2.32 16 26 C -0.15 -2.27 9.96 -39.39 -0.39 -2.66 16 27 C -0.14 -0.74 5.55 -26.63 -0.15 -0.89 16 28 C 0.11 0.71 6.43 -3.73 -0.02 0.69 16 29 H 0.09 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.09 0.23 7.70 -51.93 -0.40 -0.17 16 31 H 0.09 0.23 7.93 -51.93 -0.41 -0.19 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.26 5.94 -51.93 -0.31 -0.04 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 0.83 7.58 -51.93 -0.39 0.44 16 37 H 0.40 1.95 8.62 -40.82 -0.35 1.59 16 38 H 0.40 3.23 8.83 -40.82 -0.36 2.87 16 39 H 0.13 2.24 6.42 -52.48 -0.34 1.90 16 40 H 0.12 2.33 8.06 -52.48 -0.42 1.91 16 41 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 42 H 0.02 0.54 7.51 -51.93 -0.39 0.15 16 43 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 44 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 46 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.10 0.73 7.01 -51.93 -0.36 0.37 16 49 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 397.69 15.07 5.99 5.99 Total: -1.00 -36.42 397.69 -10.23 -46.65 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -7.50 Total: 2.45 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -4.11 Total: -10.92 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.11 Total: -45.19 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.16 Total: -15.66 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.68 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.42 -10.23 -46.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932583890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.010 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds