Wall clock time and date at job start Wed Apr 1 2020 05:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21280 * 119.99565 * 2 1 4 4 N 1.34781 * 119.99829 * 179.71874 * 2 1 3 5 5 C 1.46925 * 120.63088 * 0.02562 * 4 2 1 6 6 C 1.53626 * 108.54431 * 126.36601 * 5 4 2 7 7 C 1.53041 * 109.23999 * 54.85145 * 6 5 4 8 8 N 1.46504 * 109.44639 * 178.49619 * 7 6 5 9 9 C 1.34776 * 120.00367 * 275.06411 * 8 7 6 10 10 O 1.21584 * 119.99629 * 359.97438 * 9 8 7 11 11 N 1.34769 * 120.00221 * 180.02562 * 9 8 7 12 12 C 1.39940 * 120.00260 * 174.68690 * 11 9 8 13 13 C 1.38870 * 120.06921 * 326.56854 * 12 11 9 14 14 C 1.38111 * 119.92826 * 179.77065 * 13 12 11 15 15 C 1.38280 * 120.06871 * 0.49892 * 14 13 12 16 16 C 1.50706 * 119.92800 * 179.72599 * 15 14 13 17 17 C 1.50698 * 109.47256 * 270.02484 * 16 15 14 18 18 H 1.08003 * 119.99831 * 0.02562 * 17 16 15 19 19 C 1.37873 * 120.00299 * 179.97438 * 17 16 15 20 20 N 1.31516 * 120.00468 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 119.99783 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46901 * 90.00026 * 21 19 17 23 23 H 1.48500 * 109.47133 * 209.99816 * 21 19 17 24 24 H 1.48496 * 109.47194 * 330.00075 * 21 19 17 25 25 C 1.38272 * 120.14427 * 359.75268 * 15 14 13 26 26 C 1.38118 * 120.06935 * 359.97438 * 25 15 14 27 27 C 1.53036 * 109.53896 * 298.51161 * 7 6 5 28 28 C 1.46928 * 120.62548 * 180.27604 * 4 2 1 29 29 H 1.08999 * 109.47396 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.47135 * 120.00227 * 1 2 3 31 31 H 1.08997 * 109.47478 * 240.00017 * 1 2 3 32 32 H 1.08997 * 109.58415 * 246.19802 * 5 4 2 33 33 H 1.09004 * 109.58467 * 6.62310 * 5 4 2 34 34 H 1.09003 * 109.63340 * 294.86722 * 6 5 4 35 35 H 1.08997 * 109.43077 * 174.72117 * 6 5 4 36 36 H 1.08997 * 109.45965 * 58.53407 * 7 6 5 37 37 H 0.97000 * 119.99447 * 95.06350 * 8 7 6 38 38 H 0.97001 * 119.99873 * 354.68454 * 11 9 8 39 39 H 1.08004 * 120.03452 * 359.97438 * 13 12 11 40 40 H 1.08005 * 119.96629 * 180.25365 * 14 13 12 41 41 H 1.09002 * 109.47221 * 30.02537 * 16 15 14 42 42 H 1.09001 * 109.47242 * 150.02302 * 16 15 14 43 43 H 0.97001 * 120.00274 * 180.02562 * 20 19 17 44 44 H 1.08006 * 119.96735 * 180.02562 * 25 15 14 45 45 H 1.07996 * 120.03717 * 179.97438 * 26 25 15 46 46 H 1.08996 * 109.50157 * 301.41589 * 27 7 6 47 47 H 1.09004 * 109.52576 * 181.33009 * 27 7 6 48 48 H 1.09000 * 109.58648 * 353.37539 * 28 4 2 49 49 H 1.08998 * 109.58013 * 113.66196 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 0.0057 5 6 1.4602 -2.4476 0.0114 6 6 1.9737 -3.3025 -1.1572 7 6 3.4946 -3.4371 -1.0535 8 7 3.9852 -4.2814 -2.1457 9 6 3.9854 -5.6226 -2.0128 10 8 3.5790 -6.1318 -0.9862 11 7 4.4372 -6.3992 -3.0173 12 6 4.5419 -7.7832 -2.8389 13 6 4.8690 -8.3014 -1.5927 14 6 4.9669 -9.6680 -1.4188 15 6 4.7499 -10.5196 -2.4865 16 6 4.8637 -12.0101 -2.2946 17 6 6.2821 -12.4440 -2.5608 18 1 7.0268 -11.7135 -2.8404 19 6 6.6294 -13.7733 -2.4462 20 7 7.8674 -14.1520 -2.6780 21 14 5.3418 -15.0365 -1.9604 22 1 4.6861 -15.5697 -3.1815 23 1 5.9931 -16.1486 -1.2226 24 1 4.3228 -14.3955 -1.0911 25 6 4.4292 -10.0066 -3.7298 26 6 4.3242 -8.6411 -3.9090 27 6 4.1388 -2.0523 -1.1507 28 6 3.6500 -1.1833 0.0119 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3633 -0.5139 -0.8900 31 1 -0.3634 -0.5138 0.8899 32 1 1.6419 -2.9649 0.9535 33 1 0.3921 -2.2663 -0.1083 34 1 1.7144 -2.8247 -2.1020 35 1 1.5170 -4.2911 -1.1114 36 1 3.7545 -3.8922 -0.0978 37 1 4.3098 -3.8750 -2.9645 38 1 4.6897 -5.9988 -3.8640 39 1 5.0433 -7.6366 -0.7596 40 1 5.2172 -10.0719 -0.4489 41 1 4.5914 -12.2665 -1.2708 42 1 4.1924 -12.5179 -2.9871 43 1 8.1116 -15.0873 -2.5978 44 1 4.2599 -10.6744 -4.5617 45 1 4.0741 -8.2410 -4.8804 46 1 3.8591 -1.5864 -2.0955 47 1 5.2232 -2.1506 -1.1005 48 1 4.0271 -0.1676 -0.1075 49 1 4.0068 -1.5971 0.9551 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932583890.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:59 Heat of formation + Delta-G solvation = -66.627753 kcal Electronic energy + Delta-G solvation = -29053.066164 eV Core-core repulsion = 24978.641666 eV Total energy + Delta-G solvation = -4074.424498 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.79965 -41.07650 -39.85748 -38.48756 -36.30426 -35.71699 -34.90332 -33.13547 -32.51494 -31.77432 -31.72987 -30.16634 -28.64464 -25.94857 -24.63337 -24.34455 -23.80581 -22.49446 -21.92397 -21.50879 -20.23212 -19.36654 -18.94328 -18.63923 -18.04028 -16.99385 -16.85952 -16.60481 -16.46951 -16.34329 -15.93507 -15.80813 -15.30253 -15.07555 -14.98188 -14.82348 -14.40078 -14.35086 -14.26868 -14.12886 -13.89164 -13.56141 -13.45210 -13.24693 -13.08406 -13.01762 -12.92143 -12.52312 -12.27811 -12.15521 -12.12366 -11.93498 -11.73209 -11.66811 -11.61502 -11.27804 -10.93783 -10.89242 -10.76603 -10.13481 -9.76520 -9.73428 -8.76032 -8.27860 -6.32597 0.50444 0.60193 1.37681 1.40054 1.50579 1.52019 1.64157 2.00445 2.08488 2.37206 3.02072 3.06450 3.15452 3.54421 3.73484 3.82510 4.01357 4.05721 4.09158 4.17329 4.27971 4.34277 4.35848 4.44315 4.51769 4.59942 4.63519 4.66505 4.69177 4.75975 4.78623 4.82846 4.90710 5.03425 5.07382 5.10356 5.12606 5.18581 5.28575 5.41025 5.46271 5.47859 5.50892 5.58719 5.67559 5.98232 6.04422 6.19962 6.32085 6.36965 6.73615 7.00005 7.12752 7.30832 7.50355 8.88465 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.031526 B = 0.001646 C = 0.001629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 887.953430 B =17001.972336 C =17180.780872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.506 3.494 3 O -0.600 6.600 4 N -0.612 5.612 5 C 0.111 3.889 6 C -0.140 4.140 7 C 0.163 3.837 8 N -0.722 5.722 9 C 0.700 3.300 10 O -0.612 6.612 11 N -0.670 5.670 12 C 0.143 3.857 13 C -0.126 4.126 14 C -0.118 4.118 15 C -0.078 4.078 16 C 0.021 3.979 17 C -0.518 4.518 18 H 0.029 0.971 19 C 0.008 3.992 20 N -0.949 5.949 21 Si 0.950 3.050 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.248 1.248 25 C -0.111 4.111 26 C -0.133 4.133 27 C -0.127 4.127 28 C 0.110 3.890 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.072 0.928 37 H 0.413 0.587 38 H 0.423 0.577 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.026 0.974 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.131 0.869 45 H 0.158 0.842 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.520 29.018 0.404 33.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.297 3.703 3 O -0.482 6.482 4 N -0.345 5.345 5 C -0.012 4.012 6 C -0.180 4.180 7 C 0.058 3.942 8 N -0.377 5.377 9 C 0.401 3.599 10 O -0.491 6.491 11 N -0.319 5.319 12 C 0.048 3.952 13 C -0.146 4.146 14 C -0.137 4.137 15 C -0.079 4.079 16 C -0.016 4.016 17 C -0.556 4.556 18 H 0.047 0.953 19 C -0.189 4.189 20 N -0.590 5.590 21 Si 0.773 3.227 22 H -0.187 1.187 23 H -0.210 1.210 24 H -0.172 1.172 25 C -0.129 4.129 26 C -0.154 4.154 27 C -0.166 4.166 28 C -0.013 4.013 29 H 0.106 0.894 30 H 0.129 0.871 31 H 0.128 0.872 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.091 0.909 37 H 0.250 0.750 38 H 0.261 0.739 39 H 0.140 0.860 40 H 0.131 0.869 41 H 0.044 0.956 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.148 0.852 45 H 0.175 0.825 46 H 0.099 0.901 47 H 0.111 0.889 48 H 0.102 0.898 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -16.454 29.053 1.336 33.416 hybrid contribution 0.641 -0.722 -0.422 1.053 sum -15.813 28.332 0.914 32.459 Atomic orbital electron populations 1.21984 0.88661 1.06008 1.06235 1.21557 0.92256 0.82369 0.74145 1.90695 1.72072 1.32824 1.52596 1.48322 1.07042 1.06564 1.72589 1.21987 0.98198 0.82251 0.98749 1.22354 0.95334 1.00534 0.99739 1.20840 0.93661 0.89695 0.89990 1.45020 1.68774 1.02813 1.21141 1.16084 0.78290 0.82300 0.83248 1.90944 1.54130 1.73825 1.30181 1.42310 1.68162 1.04247 1.17158 1.17352 1.00915 0.82477 0.94467 1.21002 1.01439 0.94654 0.97537 1.20951 1.00734 0.93082 0.98948 1.20161 0.97267 0.96291 0.94163 1.18639 0.95483 0.90213 0.97245 1.21186 0.94556 0.93342 1.46545 0.95278 1.25968 0.97535 1.00778 0.94639 1.70058 1.19971 1.17607 1.51340 0.85662 0.79381 0.78109 0.79565 1.18714 1.20962 1.17205 1.21011 1.00064 0.95371 0.96497 1.21007 1.03071 0.92058 0.99233 1.22077 1.01731 0.93007 0.99750 1.21541 0.79777 1.01235 0.98723 0.89378 0.87102 0.87206 0.90443 0.86514 0.90203 0.91192 0.90933 0.75024 0.73876 0.85951 0.86927 0.95596 0.94867 0.92414 0.85159 0.82469 0.90051 0.88880 0.89786 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 8.67 71.24 0.62 -0.38 16 2 C 0.51 7.41 7.81 87.66 0.68 8.09 16 3 O -0.60 -14.65 16.50 -3.03 -0.05 -14.70 16 4 N -0.61 -6.88 2.97 -818.13 -2.43 -9.30 16 5 C 0.11 0.81 6.37 86.51 0.55 1.36 16 6 C -0.14 -1.39 5.67 30.82 0.17 -1.22 16 7 C 0.16 1.96 2.41 45.02 0.11 2.07 16 8 N -0.72 -9.20 5.08 -457.69 -2.33 -11.53 16 9 C 0.70 15.43 8.27 179.06 1.48 16.91 16 10 O -0.61 -19.10 13.70 -3.98 -0.05 -19.15 16 11 N -0.67 -13.74 5.35 -317.19 -1.70 -15.43 16 12 C 0.14 4.21 6.28 38.15 0.24 4.45 16 13 C -0.13 -4.51 8.65 22.39 0.19 -4.31 16 14 C -0.12 -4.81 9.69 22.25 0.22 -4.60 16 15 C -0.08 -3.33 5.07 -19.84 -0.10 -3.43 16 16 C 0.02 1.03 4.17 29.10 0.12 1.16 16 17 C -0.52 -30.30 9.65 25.60 0.25 -30.06 16 18 H 0.03 1.90 7.98 -2.91 -0.02 1.87 16 19 C 0.01 0.45 5.47 84.65 0.46 0.91 16 20 N -0.95 -59.71 13.96 21.45 0.30 -59.41 16 21 Si 0.95 44.16 27.47 68.60 1.88 46.04 16 22 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 25 C -0.11 -3.98 9.69 22.25 0.22 -3.77 16 26 C -0.13 -3.80 9.96 22.39 0.22 -3.58 16 27 C -0.13 -1.09 5.55 30.66 0.17 -0.92 16 28 C 0.11 1.28 6.43 86.35 0.55 1.83 16 29 H 0.09 0.63 8.12 -2.39 -0.02 0.61 16 30 H 0.11 0.18 7.70 -2.39 -0.02 0.16 16 31 H 0.11 0.21 7.93 -2.39 -0.02 0.20 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.28 5.94 -2.39 -0.01 0.27 16 34 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.07 1.23 7.58 -2.39 -0.02 1.21 16 37 H 0.41 2.61 8.62 -92.71 -0.80 1.81 16 38 H 0.42 5.10 8.83 -92.71 -0.82 4.28 16 39 H 0.12 4.43 6.42 -2.91 -0.02 4.41 16 40 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 41 H 0.03 1.24 7.14 -2.39 -0.02 1.22 16 42 H 0.03 1.52 7.51 -2.39 -0.02 1.50 16 43 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 44 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 46 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 1.25 7.01 -2.39 -0.02 1.24 16 49 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -83.47 397.69 1.10 -82.37 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -0.69 Total: 16.59 kcal Atomic # 6 Polarization: -21.63 SS G_CDS: 6.16 Total: -15.47 kcal Atomic # 7 Polarization: -89.52 SS G_CDS: -6.15 Total: -95.67 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -0.10 Total: -33.86 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.88 Total: 46.04 kcal Total: -83.47 1.10 -82.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932583890.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.744 kcal (2) G-P(sol) polarization free energy of solvation -83.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds