Wall clock time and date at job start Wed Apr 1 2020 04:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.50694 * 109.47248 * 270.27463 * 4 3 2 6 6 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00385 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99650 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00268 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47439 * 90.00453 * 9 7 5 11 11 H 1.48504 * 109.47008 * 210.00380 * 9 7 5 12 12 H 1.48496 * 109.47181 * 329.99866 * 9 7 5 13 13 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 3 2 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 3 2 16 16 N 1.46895 * 109.47051 * 180.02562 * 15 13 3 17 17 C 1.46895 * 111.00567 * 66.04495 * 16 15 13 18 18 C 1.50249 * 109.98138 * 173.66651 * 17 16 15 19 19 O 1.21284 * 118.62792 * 162.80363 * 18 17 16 20 20 N 1.33717 * 122.75290 * 342.81541 * 18 17 16 21 21 C 1.46009 * 122.92261 * 1.67080 * 20 18 17 22 22 C 1.47193 * 110.99866 * 188.93842 * 16 15 13 23 23 H 1.09007 * 109.59307 * 287.40560 * 22 16 15 24 24 C 1.50703 * 109.59628 * 47.85712 * 22 16 15 25 25 C 1.38238 * 120.00076 * 39.72505 * 24 22 16 26 26 C 1.38226 * 120.00200 * 179.81202 * 25 24 22 27 27 C 1.38242 * 119.99919 * 0.41662 * 26 25 24 28 28 C 1.38238 * 119.99661 * 359.81985 * 27 26 25 29 29 C 1.38229 * 120.00113 * 220.00143 * 24 22 16 30 30 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 32 32 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 33 33 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 34 34 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 35 35 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 36 36 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 37 37 H 0.96998 * 120.00151 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46932 * 300.00223 * 15 13 3 39 39 H 1.08997 * 109.47392 * 59.99562 * 15 13 3 40 40 H 1.09000 * 109.38617 * 293.82391 * 17 16 15 41 41 H 1.09007 * 109.38545 * 53.50884 * 17 16 15 42 42 H 0.96998 * 118.53665 * 181.68654 * 20 18 17 43 43 H 1.09000 * 109.37832 * 102.01550 * 21 20 18 44 44 H 1.08999 * 109.37376 * 221.77456 * 21 20 18 45 45 H 1.08000 * 119.99517 * 0.02562 * 25 24 22 46 46 H 1.07998 * 120.00133 * 180.21484 * 26 25 24 47 47 H 1.08000 * 120.00062 * 179.78606 * 27 26 25 48 48 H 1.08001 * 119.99695 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00094 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.6916 1.8266 -1.7003 6 1 4.3447 1.2202 -1.0904 7 6 4.1599 2.3784 -2.8739 8 7 3.3647 3.1174 -3.6163 9 14 5.9238 2.0765 -3.4093 10 1 5.9834 0.8545 -4.2510 11 1 6.4097 3.2410 -4.1922 12 1 6.7807 1.8940 -2.2103 13 6 2.2431 2.0164 1.1673 14 8 2.6522 3.1581 1.1673 15 6 1.9861 1.3081 2.4724 16 7 2.3050 2.2078 3.5889 17 6 1.3828 3.3507 3.6241 18 6 1.6289 4.1712 4.8585 19 8 1.1939 5.3025 4.9005 20 7 2.3077 3.7064 5.9126 21 6 2.9024 2.3734 5.9486 22 6 2.2707 1.4882 4.8725 23 1 1.2374 1.2676 5.1404 24 6 3.0502 0.2040 4.7529 25 6 4.2350 0.1782 4.0412 26 6 4.9520 -0.9988 3.9348 27 6 4.4797 -2.1522 4.5329 28 6 3.2924 -2.1276 5.2404 29 6 2.5775 -0.9496 5.3501 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5876 1.6880 -2.0295 36 1 2.1056 3.1398 -1.1395 37 1 3.6940 3.5053 -4.4421 38 1 0.9367 1.0183 2.5279 39 1 2.6123 0.4180 2.5322 40 1 1.5400 3.9698 2.7408 41 1 0.3554 2.9865 3.6305 42 1 2.4093 4.2802 6.6880 43 1 3.9748 2.4508 5.7695 44 1 2.7308 1.9271 6.9281 45 1 4.6022 1.0786 3.5713 46 1 5.8794 -1.0181 3.3818 47 1 5.0381 -3.0726 4.4469 48 1 2.9233 -3.0288 5.7073 49 1 1.6497 -0.9305 5.9027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000933328375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:33 Heat of formation + Delta-G solvation = -22.041041 kcal Electronic energy + Delta-G solvation = -31564.024397 eV Core-core repulsion = 27491.533324 eV Total energy + Delta-G solvation = -4072.491073 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.91993 -39.30815 -38.97565 -37.02002 -35.35761 -34.52974 -32.78945 -32.25295 -31.08406 -30.12301 -29.15956 -28.48195 -26.90160 -24.92114 -23.75720 -23.03244 -22.75026 -22.24323 -21.29071 -19.21286 -18.39626 -17.62606 -17.20664 -16.81221 -16.38429 -16.09248 -15.95041 -15.51515 -15.23414 -14.95135 -14.75244 -14.42558 -14.25681 -14.04898 -13.67658 -13.55027 -13.48318 -13.37615 -13.12250 -12.84223 -12.59836 -12.47830 -12.22514 -11.97857 -11.86892 -11.70054 -11.40248 -11.20627 -11.16088 -11.04477 -10.91051 -10.74644 -10.52781 -10.11815 -9.92865 -9.61397 -9.24421 -9.09359 -8.98155 -8.87888 -8.42741 -8.41926 -7.65276 -6.02758 -4.07194 1.09362 1.23952 2.61035 3.13036 3.30568 3.33673 3.38167 3.42369 3.44135 3.59336 4.03349 4.25340 4.46177 4.56078 4.63822 4.70601 4.84842 4.89854 4.97799 5.07377 5.10225 5.22555 5.25058 5.31957 5.33807 5.34633 5.43713 5.53263 5.61224 5.63411 5.73775 5.76336 5.81824 5.92115 5.98924 6.20573 6.25395 6.36197 6.39237 6.44125 6.61752 6.63770 6.79875 6.85769 7.09486 7.17564 7.45895 7.55743 7.93693 8.15820 8.25035 8.42000 8.91935 9.10811 9.57841 11.05374 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003902 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.248916 B = 7174.144063 C = 8425.423999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.596 5.596 4 C 0.248 3.752 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.028 3.972 16 N -0.504 5.504 17 C 0.034 3.966 18 C 0.531 3.469 19 O -0.551 6.551 20 N -0.722 5.722 21 C 0.128 3.872 22 C 0.105 3.895 23 H 0.061 0.939 24 C -0.088 4.088 25 C -0.090 4.090 26 C -0.120 4.120 27 C -0.115 4.115 28 C -0.124 4.124 29 C -0.111 4.111 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.059 0.941 39 H 0.111 0.889 40 H 0.142 0.858 41 H 0.067 0.933 42 H 0.399 0.601 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.136 0.864 46 H 0.125 0.875 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.382 -12.926 20.430 24.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.329 5.329 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.400 6.400 15 C -0.102 4.102 16 N -0.229 5.229 17 C -0.096 4.096 18 C 0.318 3.682 19 O -0.429 6.429 20 N -0.375 5.375 21 C 0.003 3.997 22 C -0.003 4.003 23 H 0.079 0.921 24 C -0.089 4.089 25 C -0.108 4.108 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.142 4.142 29 C -0.129 4.129 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.128 0.872 40 H 0.159 0.841 41 H 0.085 0.915 42 H 0.235 0.765 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.154 0.846 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.955 -11.536 19.979 23.259 hybrid contribution 0.264 -0.563 -0.042 0.623 sum -2.691 -12.099 19.936 23.476 Atomic orbital electron populations 1.22219 0.96863 1.01384 1.02241 1.21400 0.93426 0.84348 1.02609 1.48243 1.63782 1.13236 1.07650 1.19260 0.96216 0.93666 0.77986 1.21416 0.96965 1.31760 1.06165 0.92496 1.24924 0.97769 0.94925 0.96438 1.69929 1.35769 1.33425 1.14259 0.86518 0.84815 0.77642 0.78569 1.20713 1.21122 1.19899 1.20041 0.79046 0.87081 0.84646 1.90654 1.44733 1.17878 1.86699 1.22325 1.00937 0.96694 0.90263 1.62195 1.51537 1.08031 1.01183 1.22545 0.94966 0.93423 0.98665 1.20174 0.76808 0.87196 0.84048 1.90765 1.51282 1.19113 1.81693 1.45531 1.56027 1.17319 1.18574 1.21470 0.98492 0.81671 0.98067 1.20903 0.97857 0.91115 0.90453 0.92143 1.19495 0.96133 0.93507 0.99788 1.21255 0.93692 0.99000 0.96863 1.21266 1.00217 0.92776 0.99505 1.21219 0.96323 0.98318 0.97456 1.21070 0.95502 0.97762 0.99841 1.20977 0.99861 0.92252 0.99845 0.92184 0.93318 0.91928 0.89868 0.92003 0.95092 0.93864 0.92748 0.92288 0.87161 0.84079 0.91509 0.76488 0.90420 0.90092 0.84564 0.85749 0.86147 0.86111 0.86177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.16 0.38 -1.79 16 2 C 0.11 1.64 5.93 -4.05 -0.02 1.61 16 3 N -0.60 -12.10 2.46 -175.07 -0.43 -12.53 16 4 C 0.25 6.35 5.16 -5.20 -0.03 6.32 16 5 C -0.52 -14.65 9.39 -34.44 -0.32 -14.98 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.54 13.29 55.43 0.74 -25.81 16 9 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 10 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 10.03 7.43 -10.98 -0.08 9.95 16 14 O -0.52 -12.68 13.89 5.56 0.08 -12.60 16 15 C 0.03 0.40 3.48 -4.98 -0.02 0.38 16 16 N -0.50 -6.85 3.77 -230.95 -0.87 -7.72 16 17 C 0.03 0.50 5.14 -5.20 -0.03 0.48 16 18 C 0.53 7.93 7.81 -11.68 -0.09 7.84 16 19 O -0.55 -10.31 17.82 5.55 0.10 -10.21 16 20 N -0.72 -7.91 5.52 -61.06 -0.34 -8.25 16 21 C 0.13 1.12 6.68 -4.31 -0.03 1.09 16 22 C 0.11 1.05 2.21 -68.71 -0.15 0.89 16 23 H 0.06 0.54 7.95 -51.93 -0.41 0.13 16 24 C -0.09 -0.84 3.68 -104.62 -0.38 -1.22 16 25 C -0.09 -0.98 7.42 -39.59 -0.29 -1.27 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.12 -0.97 10.05 -39.58 -0.40 -1.36 16 28 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 29 C -0.11 -0.88 9.67 -39.59 -0.38 -1.26 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 7.20 -51.93 -0.37 0.22 16 32 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 34 H 0.06 0.80 6.44 -51.93 -0.33 0.47 16 35 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 0.73 7.08 -51.93 -0.37 0.36 16 39 H 0.11 1.48 4.45 -51.93 -0.23 1.25 16 40 H 0.14 2.63 6.01 -51.93 -0.31 2.32 16 41 H 0.07 0.87 8.05 -51.93 -0.42 0.45 16 42 H 0.40 3.72 8.84 -40.82 -0.36 3.35 16 43 H 0.08 0.72 8.04 -51.93 -0.42 0.31 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.14 1.76 7.70 -52.49 -0.40 1.36 16 46 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 47 H 0.12 0.80 8.06 -52.49 -0.42 0.37 16 48 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 49 H 0.12 0.73 8.04 -52.48 -0.42 0.31 16 LS Contribution 395.52 15.07 5.96 5.96 Total: -1.00 -35.04 395.52 -9.89 -44.93 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.36 Total: 4.03 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -2.74 Total: 5.42 kcal Atomic # 7 Polarization: -53.41 SS G_CDS: -0.90 Total: -54.31 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.04 -9.89 -44.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933328375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.890 kcal (2) G-P(sol) polarization free energy of solvation -35.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds