Wall clock time and date at job start Wed Apr 1 2020 04:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46493 * 109.47637 * 2 1 4 4 C 1.46494 * 120.00444 * 269.72749 * 3 2 1 5 5 C 1.50694 * 109.47248 * 270.27463 * 4 3 2 6 6 H 1.07999 * 119.99904 * 359.97438 * 5 4 3 7 7 C 1.37883 * 120.00385 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99650 * 0.02562 * 7 5 4 9 9 Si 1.86794 * 120.00268 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47439 * 90.00453 * 9 7 5 11 11 H 1.48504 * 109.47008 * 210.00380 * 9 7 5 12 12 H 1.48496 * 109.47181 * 329.99866 * 9 7 5 13 13 C 1.34784 * 119.99864 * 90.00039 * 3 2 1 14 14 O 1.21279 * 119.99925 * 179.72608 * 13 3 2 15 15 C 1.50700 * 119.99961 * 359.72839 * 13 3 2 16 16 N 1.46895 * 109.47051 * 180.02562 * 15 13 3 17 17 C 1.46895 * 111.00567 * 66.04495 * 16 15 13 18 18 C 1.50249 * 109.98138 * 173.66651 * 17 16 15 19 19 O 1.21284 * 118.62792 * 162.80363 * 18 17 16 20 20 N 1.33717 * 122.75290 * 342.81541 * 18 17 16 21 21 C 1.46009 * 122.92261 * 1.67080 * 20 18 17 22 22 C 1.47193 * 110.99866 * 188.93842 * 16 15 13 23 23 H 1.09007 * 109.59307 * 287.40560 * 22 16 15 24 24 C 1.50703 * 109.59628 * 47.85712 * 22 16 15 25 25 C 1.38238 * 120.00076 * 39.72505 * 24 22 16 26 26 C 1.38226 * 120.00200 * 179.81202 * 25 24 22 27 27 C 1.38242 * 119.99919 * 0.41662 * 26 25 24 28 28 C 1.38238 * 119.99661 * 359.81985 * 27 26 25 29 29 C 1.38229 * 120.00113 * 220.00143 * 24 22 16 30 30 H 1.08994 * 109.47425 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46747 * 300.00171 * 1 2 3 32 32 H 1.08996 * 109.47074 * 59.99445 * 1 2 3 33 33 H 1.09002 * 109.46747 * 239.99829 * 2 1 3 34 34 H 1.08996 * 109.47074 * 120.00555 * 2 1 3 35 35 H 1.09003 * 109.47006 * 30.27410 * 4 3 2 36 36 H 1.09004 * 109.47665 * 150.27102 * 4 3 2 37 37 H 0.96998 * 120.00151 * 180.02562 * 8 7 5 38 38 H 1.09004 * 109.46932 * 300.00223 * 15 13 3 39 39 H 1.08997 * 109.47392 * 59.99562 * 15 13 3 40 40 H 1.09000 * 109.38617 * 293.82391 * 17 16 15 41 41 H 1.09007 * 109.38545 * 53.50884 * 17 16 15 42 42 H 0.96998 * 118.53665 * 181.68654 * 20 18 17 43 43 H 1.09000 * 109.37832 * 102.01550 * 21 20 18 44 44 H 1.08999 * 109.37376 * 221.77456 * 21 20 18 45 45 H 1.08000 * 119.99517 * 0.02562 * 25 24 22 46 46 H 1.07998 * 120.00133 * 180.21484 * 26 25 24 47 47 H 1.08000 * 120.00062 * 179.78606 * 27 26 25 48 48 H 1.08001 * 119.99695 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.00094 * 359.97438 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2684 2.0697 -1.2686 5 6 3.6916 1.8266 -1.7003 6 1 4.3447 1.2202 -1.0904 7 6 4.1599 2.3784 -2.8739 8 7 3.3647 3.1174 -3.6163 9 14 5.9238 2.0765 -3.4093 10 1 5.9834 0.8545 -4.2510 11 1 6.4097 3.2410 -4.1922 12 1 6.7807 1.8940 -2.2103 13 6 2.2431 2.0164 1.1673 14 8 2.6522 3.1581 1.1673 15 6 1.9861 1.3081 2.4724 16 7 2.3050 2.2078 3.5889 17 6 1.3828 3.3507 3.6241 18 6 1.6289 4.1712 4.8585 19 8 1.1939 5.3025 4.9005 20 7 2.3077 3.7064 5.9126 21 6 2.9024 2.3734 5.9486 22 6 2.2707 1.4882 4.8725 23 1 1.2374 1.2676 5.1404 24 6 3.0502 0.2040 4.7529 25 6 4.2350 0.1782 4.0412 26 6 4.9520 -0.9988 3.9348 27 6 4.4797 -2.1522 4.5329 28 6 3.2924 -2.1276 5.2404 29 6 2.5775 -0.9496 5.3501 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 1.5876 1.6880 -2.0295 36 1 2.1056 3.1398 -1.1395 37 1 3.6940 3.5053 -4.4421 38 1 0.9367 1.0183 2.5279 39 1 2.6123 0.4180 2.5322 40 1 1.5400 3.9698 2.7408 41 1 0.3554 2.9865 3.6305 42 1 2.4093 4.2802 6.6880 43 1 3.9748 2.4508 5.7695 44 1 2.7308 1.9271 6.9281 45 1 4.6022 1.0786 3.5713 46 1 5.8794 -1.0181 3.3818 47 1 5.0381 -3.0726 4.4469 48 1 2.9233 -3.0288 5.7073 49 1 1.6497 -0.9305 5.9027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933328375.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:31 Heat of formation + Delta-G solvation = -47.211184 kcal Electronic energy + Delta-G solvation = -31565.115856 eV Core-core repulsion = 27491.533324 eV Total energy + Delta-G solvation = -4073.582532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.94692 -40.54213 -40.10205 -38.08286 -36.92625 -35.63707 -34.87065 -33.09596 -31.74387 -31.63657 -30.47662 -29.31737 -28.64362 -26.17397 -24.92773 -24.42446 -23.69754 -23.41643 -22.16345 -20.13755 -19.90205 -18.68062 -18.58155 -18.28077 -17.66107 -17.40741 -17.21630 -16.65321 -16.32001 -16.16239 -16.11970 -15.75813 -15.26422 -15.08674 -14.90627 -14.67615 -14.57470 -14.40807 -14.16526 -14.04276 -13.80779 -13.59551 -13.56051 -13.26710 -13.10670 -13.00103 -12.79404 -12.66819 -12.64930 -12.48857 -12.15906 -11.88730 -11.82708 -11.80197 -11.69410 -11.14466 -10.63236 -10.52986 -10.18666 -9.72126 -9.59388 -9.55099 -9.35940 -8.21265 -6.35633 0.43352 0.58452 1.35359 1.38970 1.43936 1.48830 1.85320 2.11460 2.24901 2.39235 2.71608 2.94107 3.08398 3.34064 3.61880 3.78120 3.86436 3.99647 4.05461 4.08860 4.22005 4.26585 4.30522 4.35045 4.43406 4.43973 4.53944 4.59797 4.63734 4.70606 4.76343 4.91583 4.93764 4.99258 5.06205 5.12365 5.22786 5.25905 5.38055 5.51365 5.56065 5.59844 5.68984 5.74939 5.75665 5.88101 5.97455 6.08339 6.13275 6.18560 6.72299 6.83382 7.08639 7.30499 7.54034 8.85709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.009150 B = 0.003902 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3059.248916 B = 7174.144063 C = 8425.423999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.101 3.899 3 N -0.603 5.603 4 C 0.265 3.735 5 C -0.538 4.538 6 H 0.053 0.947 7 C 0.008 3.992 8 N -0.930 5.930 9 Si 0.965 3.035 10 H -0.262 1.262 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.496 3.504 14 O -0.579 6.579 15 C 0.050 3.950 16 N -0.522 5.522 17 C 0.040 3.960 18 C 0.529 3.471 19 O -0.600 6.600 20 N -0.704 5.704 21 C 0.125 3.875 22 C 0.107 3.893 23 H 0.086 0.914 24 C -0.090 4.090 25 C -0.109 4.109 26 C -0.135 4.135 27 C -0.116 4.116 28 C -0.119 4.119 29 C -0.101 4.101 30 H 0.096 0.904 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.095 0.905 35 H 0.021 0.979 36 H -0.006 1.006 37 H 0.266 0.734 38 H 0.089 0.911 39 H 0.126 0.874 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.410 0.590 43 H 0.071 0.929 44 H 0.125 0.875 45 H 0.104 0.896 46 H 0.119 0.881 47 H 0.138 0.862 48 H 0.149 0.851 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.670 -16.874 23.251 28.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.022 4.022 3 N -0.335 5.335 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.186 1.186 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.284 3.716 14 O -0.459 6.459 15 C -0.080 4.080 16 N -0.248 5.248 17 C -0.091 4.091 18 C 0.316 3.684 19 O -0.481 6.481 20 N -0.356 5.356 21 C 0.001 3.999 22 C 0.000 4.000 23 H 0.104 0.896 24 C -0.091 4.091 25 C -0.128 4.128 26 C -0.153 4.153 27 C -0.134 4.134 28 C -0.137 4.137 29 C -0.120 4.120 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.039 0.961 36 H 0.012 0.988 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.143 0.857 40 H 0.113 0.887 41 H 0.105 0.895 42 H 0.247 0.753 43 H 0.089 0.911 44 H 0.143 0.857 45 H 0.122 0.878 46 H 0.137 0.863 47 H 0.155 0.845 48 H 0.166 0.834 49 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.237 -15.569 22.847 27.836 hybrid contribution 0.388 0.605 -0.868 1.127 sum -2.850 -14.964 21.979 26.742 Atomic orbital electron populations 1.22152 0.94521 1.03545 1.01629 1.21713 0.95307 0.81423 1.03708 1.48256 1.64009 1.15098 1.06133 1.18655 0.95179 0.91419 0.80417 1.21691 0.97938 1.31707 1.06328 0.92905 1.25840 1.02253 0.94519 0.96509 1.70055 1.37850 1.34309 1.14734 0.85448 0.79193 0.78176 0.78199 1.18646 1.20874 1.19802 1.21121 0.77565 0.86629 0.86250 1.90635 1.47055 1.20547 1.87669 1.22134 1.02831 0.95975 0.87058 1.62058 1.51629 1.08278 1.02851 1.22270 0.96380 0.93529 0.96901 1.20175 0.76983 0.86489 0.84747 1.90737 1.53699 1.21008 1.82648 1.45448 1.54139 1.18370 1.17622 1.21746 0.97839 0.80330 0.99967 1.21050 0.99459 0.91171 0.88350 0.89626 1.19411 0.95514 0.93893 1.00298 1.21060 0.95085 0.98248 0.98368 1.21325 1.00361 0.93286 1.00359 1.21465 0.96887 0.98206 0.96878 1.21431 0.94720 0.98750 0.98825 1.21253 1.00575 0.91248 0.98898 0.88508 0.92231 0.94298 0.90979 0.88639 0.96135 0.98782 0.92514 0.89284 0.85681 0.88691 0.89479 0.75304 0.91061 0.85734 0.87817 0.86291 0.84450 0.83376 0.83296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.79 10.24 71.98 0.74 -3.06 16 2 C 0.10 2.99 5.93 86.38 0.51 3.50 16 3 N -0.60 -25.28 2.46 -826.18 -2.03 -27.31 16 4 C 0.26 14.43 5.16 85.63 0.44 14.88 16 5 C -0.54 -31.32 9.39 25.60 0.24 -31.08 16 6 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.44 5.46 84.66 0.46 0.90 16 8 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 9 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.50 20.38 7.43 87.66 0.65 21.03 16 14 O -0.58 -30.20 13.89 -3.03 -0.04 -30.24 16 15 C 0.05 1.36 3.48 85.56 0.30 1.66 16 16 N -0.52 -13.83 3.77 -884.61 -3.34 -17.17 16 17 C 0.04 1.20 5.14 85.42 0.44 1.64 16 18 C 0.53 15.91 7.81 87.68 0.69 16.60 16 19 O -0.60 -23.25 17.82 -3.04 -0.05 -23.31 16 20 N -0.70 -14.39 5.52 -466.08 -2.57 -16.96 16 21 C 0.12 1.83 6.68 86.47 0.58 2.41 16 22 C 0.11 1.80 2.21 44.11 0.10 1.90 16 23 H 0.09 1.08 7.95 -2.38 -0.02 1.06 16 24 C -0.09 -1.41 3.68 -19.87 -0.07 -1.48 16 25 C -0.11 -2.25 7.42 22.27 0.17 -2.09 16 26 C -0.14 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.12 -1.57 10.05 22.27 0.22 -1.34 16 28 C -0.12 -1.24 10.05 22.27 0.22 -1.02 16 29 C -0.10 -1.08 9.67 22.27 0.22 -0.86 16 30 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 31 H 0.06 1.28 7.20 -2.39 -0.02 1.26 16 32 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.07 2.30 8.07 -2.39 -0.02 2.28 16 34 H 0.10 2.19 6.44 -2.39 -0.02 2.18 16 35 H 0.02 1.14 8.07 -2.39 -0.02 1.12 16 36 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 37 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 38 H 0.09 1.91 7.08 -2.38 -0.02 1.89 16 39 H 0.13 3.09 4.45 -2.39 -0.01 3.08 16 40 H 0.10 3.85 6.01 -2.39 -0.01 3.84 16 41 H 0.09 2.19 8.05 -2.38 -0.02 2.17 16 42 H 0.41 6.96 8.84 -92.71 -0.82 6.14 16 43 H 0.07 1.21 8.04 -2.39 -0.02 1.19 16 44 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 2.80 7.70 -2.91 -0.02 2.78 16 46 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 47 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 48 H 0.15 0.78 8.06 -2.91 -0.02 0.75 16 49 H 0.15 0.78 8.04 -2.91 -0.02 0.76 16 Total: -1.00 -84.13 395.52 0.54 -83.59 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: 0.15 Total: 19.39 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 6.12 Total: 21.34 kcal Atomic # 7 Polarization: -110.71 SS G_CDS: -7.65 Total: -118.37 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -0.10 Total: -53.54 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -84.13 0.54 -83.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933328375.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.380 kcal (2) G-P(sol) polarization free energy of solvation -84.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds