Wall clock time and date at job start Wed Apr 1 2020 03:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46898 * 2 1 4 4 C 1.34774 * 119.99920 * 275.28376 * 3 2 1 5 5 O 1.21283 * 119.99613 * 174.77276 * 4 3 2 6 6 C 1.50700 * 120.00273 * 354.77425 * 4 3 2 7 7 H 1.09000 * 110.43567 * 32.24097 * 6 4 3 8 8 C 1.54809 * 110.48482 * 269.69981 * 6 4 3 9 9 C 1.55344 * 101.93171 * 262.17456 * 8 6 4 10 10 O 1.44382 * 103.50348 * 322.94590 * 9 8 6 11 11 C 1.43743 * 106.97148 * 40.09364 * 10 9 8 12 12 H 1.09004 * 109.88178 * 92.90784 * 11 10 9 13 13 C 1.50695 * 110.00306 * 213.99102 * 11 10 9 14 14 C 1.38654 * 120.79077 * 37.62832 * 13 11 10 15 15 C 1.38202 * 119.16123 * 179.75543 * 14 13 11 16 16 N 1.31871 * 120.76892 * 0.53022 * 15 14 13 17 17 C 1.31871 * 121.72190 * 359.74121 * 16 15 14 18 18 C 1.38212 * 120.76456 * 359.97438 * 17 16 15 19 19 C 1.46499 * 119.99867 * 95.29182 * 3 2 1 20 20 C 1.53492 * 114.20690 * 299.99247 * 19 3 2 21 21 N 1.47066 * 87.98405 * 87.72106 * 20 19 3 22 22 C 1.36943 * 136.05508 * 207.08911 * 21 20 19 23 23 H 1.07996 * 120.00113 * 355.16642 * 22 21 20 24 24 C 1.38813 * 119.99841 * 175.16867 * 22 21 20 25 25 N 1.31616 * 120.00024 * 5.13463 * 24 22 21 26 26 Si 1.86803 * 120.00163 * 185.14082 * 24 22 21 27 27 H 1.48498 * 109.46775 * 94.99552 * 26 24 22 28 28 H 1.48493 * 109.47085 * 214.99563 * 26 24 22 29 29 H 1.48504 * 109.46827 * 335.00000 * 26 24 22 30 30 C 1.47065 * 87.88533 * 27.34342 * 21 20 19 31 31 H 1.09002 * 109.47319 * 300.00289 * 1 2 3 32 32 H 1.09001 * 109.47025 * 59.99885 * 1 2 3 33 33 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46919 * 239.99910 * 2 1 3 35 35 H 1.08997 * 109.46612 * 119.99890 * 2 1 3 36 36 H 1.09000 * 110.90925 * 20.40208 * 8 6 4 37 37 H 1.08997 * 110.90871 * 144.00679 * 8 6 4 38 38 H 1.09005 * 110.58592 * 204.45439 * 9 8 6 39 39 H 1.09001 * 110.77780 * 81.52921 * 9 8 6 40 40 H 1.08003 * 120.41536 * 359.97438 * 14 13 11 41 41 H 1.08003 * 119.61286 * 180.28979 * 15 14 13 42 42 H 1.07994 * 119.61618 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.41662 * 180.02562 * 18 17 16 44 44 H 1.09007 * 113.28324 * 166.93241 * 19 3 2 45 45 H 1.08998 * 113.46946 * 332.94145 * 20 19 3 46 46 H 1.09003 * 113.52811 * 202.50757 * 20 19 3 47 47 H 0.96999 * 120.00361 * 180.02562 * 25 24 22 48 48 H 1.08996 * 113.46773 * 87.44107 * 30 21 20 49 49 H 1.08997 * 113.46464 * 217.88219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1415 2.0523 -1.1622 5 8 2.4545 3.2241 -1.1555 6 6 1.8905 1.3469 -2.4701 7 1 1.1268 0.5788 -2.3477 8 6 3.2014 0.7263 -3.0112 9 6 3.6673 1.7999 -4.0327 10 8 2.4329 2.2649 -4.6197 11 6 1.4708 2.3567 -3.5557 12 1 1.4697 3.3656 -3.1430 13 6 0.0973 2.0130 -4.0717 14 6 -0.0770 1.0092 -5.0122 15 6 -1.3522 0.7185 -5.4584 16 7 -2.3940 1.3899 -5.0080 17 6 -2.2653 2.3543 -4.1178 18 6 -1.0217 2.6969 -3.6215 19 6 2.3727 2.0328 1.2633 20 6 1.2151 2.1329 2.2663 21 7 1.5962 0.8010 2.7599 22 6 0.9552 -0.2466 3.3656 23 1 -0.0819 -0.1524 3.6520 24 6 1.6383 -1.4297 3.6115 25 7 2.9269 -1.5110 3.3557 26 14 0.7290 -2.9066 4.3053 27 1 0.3073 -3.7955 3.1929 28 1 1.6258 -3.6537 5.2232 29 1 -0.4692 -2.4445 5.0510 30 6 2.9699 1.0919 2.3227 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.9326 0.6037 -2.2122 37 1 3.0060 -0.2246 -3.5069 38 1 4.3093 1.3534 -4.7921 39 1 4.1834 2.6162 -3.5273 40 1 0.7728 0.4591 -5.3886 41 1 -1.4969 -0.0652 -6.1874 42 1 -3.1418 2.8819 -3.7720 43 1 -0.9228 3.4874 -2.8923 44 1 2.9286 2.9607 1.1284 45 1 0.2328 2.1563 1.7945 46 1 1.3466 2.9236 3.0050 47 1 3.4042 -2.3378 3.5271 48 1 3.5650 1.6082 3.0758 49 1 3.4825 0.2284 1.8988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000950350404.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:23 Heat of formation + Delta-G solvation = 30.456924 kcal Electronic energy + Delta-G solvation = -32013.495431 eV Core-core repulsion = 27943.280841 eV Total energy + Delta-G solvation = -4070.214590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.06505 -39.98942 -38.98244 -37.49353 -34.69548 -33.44701 -32.48964 -31.97972 -31.32246 -29.98898 -28.85395 -27.55904 -24.90565 -24.78760 -23.70523 -23.37241 -22.89555 -22.14760 -21.56349 -19.81520 -18.30351 -17.69411 -17.03744 -16.78463 -16.44287 -16.26208 -15.77766 -15.49847 -15.12673 -14.84910 -14.75351 -14.45530 -14.01124 -13.84261 -13.72183 -13.70206 -13.28267 -13.10569 -12.95430 -12.74307 -12.39634 -12.07370 -11.96439 -11.74699 -11.62933 -11.45609 -11.41254 -11.23075 -11.04993 -10.95100 -10.65528 -10.43616 -10.11593 -10.06128 -9.95203 -9.75661 -9.59859 -9.51707 -9.38115 -9.27269 -8.87211 -8.10289 -7.00939 -5.89916 -3.22303 1.01000 1.04915 2.73804 3.23296 3.29967 3.36658 3.37975 3.51523 3.83012 4.25423 4.33766 4.34565 4.40756 4.59059 4.70144 4.77870 4.92052 5.00481 5.04836 5.12850 5.17344 5.25251 5.35482 5.40149 5.47151 5.51960 5.53742 5.59105 5.68679 5.73612 5.76879 5.85932 5.88312 5.89353 6.05633 6.10979 6.18800 6.27160 6.34712 6.45660 6.55208 6.63540 6.64902 6.83249 6.97632 7.05295 7.21587 7.41799 7.82265 7.82896 7.89836 8.42538 8.91128 9.57211 10.50495 11.26566 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003528 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.746645 B = 7935.099542 C = 8788.411348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.098 3.902 3 N -0.564 5.564 4 C 0.521 3.479 5 O -0.551 6.551 6 C -0.138 4.138 7 H 0.109 0.891 8 C -0.139 4.139 9 C 0.048 3.952 10 O -0.365 6.365 11 C 0.130 3.870 12 H 0.101 0.899 13 C -0.041 4.041 14 C -0.148 4.148 15 C 0.094 3.906 16 N -0.486 5.486 17 C 0.098 3.902 18 C -0.159 4.159 19 C 0.082 3.918 20 C 0.104 3.896 21 N -0.604 5.604 22 C -0.212 4.212 23 H 0.079 0.921 24 C -0.004 4.004 25 N -0.919 5.919 26 Si 0.907 3.093 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.281 1.281 30 C 0.142 3.858 31 H 0.072 0.928 32 H 0.033 0.967 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.131 0.869 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.069 0.931 40 H 0.137 0.863 41 H 0.155 0.845 42 H 0.157 0.843 43 H 0.136 0.864 44 H 0.097 0.903 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.254 0.746 48 H 0.037 0.963 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.950 4.448 -15.713 16.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.024 4.024 3 N -0.293 5.293 4 C 0.308 3.692 5 O -0.431 6.431 6 C -0.159 4.159 7 H 0.127 0.873 8 C -0.177 4.177 9 C -0.028 4.028 10 O -0.284 6.284 11 C 0.072 3.928 12 H 0.119 0.881 13 C -0.049 4.049 14 C -0.168 4.168 15 C -0.063 4.063 16 N -0.195 5.195 17 C -0.058 4.058 18 C -0.179 4.179 19 C -0.023 4.023 20 C -0.023 4.023 21 N -0.330 5.330 22 C -0.340 4.340 23 H 0.097 0.903 24 C -0.201 4.201 25 N -0.566 5.566 26 Si 0.737 3.263 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.015 3.985 31 H 0.091 0.909 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.115 0.885 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.173 0.827 42 H 0.174 0.826 43 H 0.154 0.846 44 H 0.115 0.885 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.064 0.936 48 H 0.054 0.946 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.699 4.539 -16.061 16.907 hybrid contribution 0.413 -0.779 1.300 1.571 sum -2.286 3.760 -14.761 15.403 Atomic orbital electron populations 1.22106 0.96176 1.01807 1.01353 1.21811 0.94453 0.81598 1.04563 1.47448 1.62497 1.14436 1.04962 1.20097 0.77433 0.86660 0.85019 1.90646 1.49209 1.15923 1.87282 1.22725 1.00515 0.99052 0.93650 0.87251 1.23141 0.95436 0.99470 0.99640 1.23671 0.87269 0.95877 0.95974 1.88868 1.20638 1.87927 1.30933 1.21541 0.85538 0.99773 0.85981 0.88122 1.20224 0.94552 0.94698 0.95438 1.21990 0.99003 0.98126 0.97692 1.22765 0.88039 0.97657 0.97804 1.67664 1.34360 1.06625 1.10878 1.22723 0.96696 0.93672 0.92745 1.22035 0.93185 1.01159 1.01526 1.22708 0.99012 0.97077 0.83472 1.22873 0.96661 0.89434 0.93318 1.45765 1.05150 1.11236 1.70867 1.18883 0.94181 0.88744 1.32162 0.90295 1.24729 0.95778 0.97748 1.01821 1.69809 1.06642 1.26375 1.53775 0.86176 0.78622 0.82972 0.78500 1.21490 1.21736 1.20669 1.22580 0.89373 0.95541 0.90963 0.90898 0.94778 0.92162 0.92757 0.85104 0.89213 0.89299 0.88481 0.91254 0.84470 0.82746 0.82605 0.84582 0.88478 0.93794 0.94115 0.93566 0.94565 0.90266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.93 37.16 0.37 -2.18 16 2 C 0.10 1.67 4.96 -4.04 -0.02 1.65 16 3 N -0.56 -9.61 2.73 -165.74 -0.45 -10.06 16 4 C 0.52 8.33 6.65 -10.99 -0.07 8.25 16 5 O -0.55 -10.12 15.14 5.55 0.08 -10.04 16 6 C -0.14 -1.76 2.11 -90.24 -0.19 -1.95 16 7 H 0.11 1.38 5.16 -51.93 -0.27 1.12 16 8 C -0.14 -1.49 6.51 -24.53 -0.16 -1.65 16 9 C 0.05 0.51 7.73 38.40 0.30 0.81 16 10 O -0.36 -4.57 10.55 -35.23 -0.37 -4.95 16 11 C 0.13 1.66 3.22 -27.31 -0.09 1.57 16 12 H 0.10 1.45 6.66 -51.93 -0.35 1.11 16 13 C -0.04 -0.49 4.80 -104.32 -0.50 -0.99 16 14 C -0.15 -1.61 9.47 -39.44 -0.37 -1.98 16 15 C 0.09 1.00 11.18 -17.55 -0.20 0.81 16 16 N -0.49 -5.93 10.36 -13.25 -0.14 -6.07 16 17 C 0.10 1.09 11.18 -17.54 -0.20 0.89 16 18 C -0.16 -1.82 9.79 -39.44 -0.39 -2.21 16 19 C 0.08 1.53 4.65 -67.68 -0.31 1.21 16 20 C 0.10 2.04 7.80 -8.51 -0.07 1.97 16 21 N -0.60 -13.78 2.39 -184.63 -0.44 -14.22 16 22 C -0.21 -5.34 10.19 -15.06 -0.15 -5.49 16 23 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 24 C 0.00 -0.10 5.45 -17.43 -0.10 -0.20 16 25 N -0.92 -24.68 11.48 55.49 0.64 -24.05 16 26 Si 0.91 20.63 29.56 -169.99 -5.02 15.61 16 27 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 30 C 0.14 3.05 6.50 -8.37 -0.05 2.99 16 31 H 0.07 1.34 6.13 -51.93 -0.32 1.02 16 32 H 0.03 0.50 7.20 -51.93 -0.37 0.12 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.80 6.47 -51.93 -0.34 0.47 16 35 H 0.13 2.78 5.05 -51.93 -0.26 2.52 16 36 H 0.09 1.01 7.86 -51.93 -0.41 0.60 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.14 1.30 7.81 -52.48 -0.41 0.89 16 41 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 42 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 43 H 0.14 1.42 8.06 -52.48 -0.42 0.99 16 44 H 0.10 1.76 7.33 -51.93 -0.38 1.38 16 45 H 0.04 0.85 6.75 -51.93 -0.35 0.50 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.25 6.73 8.31 -40.82 -0.34 6.39 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.08 1.87 6.26 -51.93 -0.33 1.54 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -29.40 387.53 -9.20 -38.60 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -7.13 Total: 5.83 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: -2.20 Total: 3.50 kcal Atomic # 7 Polarization: -54.00 SS G_CDS: -0.39 Total: -54.40 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.29 Total: -14.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.40 -9.20 -38.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950350404.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.059 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds