Wall clock time and date at job start Wed Apr 1 2020 03:09:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.46898 * 2 1 4 4 C 1.34774 * 119.99920 * 275.28376 * 3 2 1 5 5 O 1.21283 * 119.99613 * 174.77276 * 4 3 2 6 6 C 1.50700 * 120.00273 * 354.77425 * 4 3 2 7 7 H 1.09000 * 110.43567 * 32.24097 * 6 4 3 8 8 C 1.54809 * 110.48482 * 269.69981 * 6 4 3 9 9 C 1.55344 * 101.93171 * 262.17456 * 8 6 4 10 10 O 1.44382 * 103.50348 * 322.94590 * 9 8 6 11 11 C 1.43743 * 106.97148 * 40.09364 * 10 9 8 12 12 H 1.09004 * 109.88178 * 92.90784 * 11 10 9 13 13 C 1.50695 * 110.00306 * 213.99102 * 11 10 9 14 14 C 1.38654 * 120.79077 * 37.62832 * 13 11 10 15 15 C 1.38202 * 119.16123 * 179.75543 * 14 13 11 16 16 N 1.31871 * 120.76892 * 0.53022 * 15 14 13 17 17 C 1.31871 * 121.72190 * 359.74121 * 16 15 14 18 18 C 1.38212 * 120.76456 * 359.97438 * 17 16 15 19 19 C 1.46499 * 119.99867 * 95.29182 * 3 2 1 20 20 C 1.53492 * 114.20690 * 299.99247 * 19 3 2 21 21 N 1.47066 * 87.98405 * 87.72106 * 20 19 3 22 22 C 1.36943 * 136.05508 * 207.08911 * 21 20 19 23 23 H 1.07996 * 120.00113 * 355.16642 * 22 21 20 24 24 C 1.38813 * 119.99841 * 175.16867 * 22 21 20 25 25 N 1.31616 * 120.00024 * 5.13463 * 24 22 21 26 26 Si 1.86803 * 120.00163 * 185.14082 * 24 22 21 27 27 H 1.48498 * 109.46775 * 94.99552 * 26 24 22 28 28 H 1.48493 * 109.47085 * 214.99563 * 26 24 22 29 29 H 1.48504 * 109.46827 * 335.00000 * 26 24 22 30 30 C 1.47065 * 87.88533 * 27.34342 * 21 20 19 31 31 H 1.09002 * 109.47319 * 300.00289 * 1 2 3 32 32 H 1.09001 * 109.47025 * 59.99885 * 1 2 3 33 33 H 1.09006 * 109.47252 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.46919 * 239.99910 * 2 1 3 35 35 H 1.08997 * 109.46612 * 119.99890 * 2 1 3 36 36 H 1.09000 * 110.90925 * 20.40208 * 8 6 4 37 37 H 1.08997 * 110.90871 * 144.00679 * 8 6 4 38 38 H 1.09005 * 110.58592 * 204.45439 * 9 8 6 39 39 H 1.09001 * 110.77780 * 81.52921 * 9 8 6 40 40 H 1.08003 * 120.41536 * 359.97438 * 14 13 11 41 41 H 1.08003 * 119.61286 * 180.28979 * 15 14 13 42 42 H 1.07994 * 119.61618 * 180.02562 * 17 16 15 43 43 H 1.08003 * 120.41662 * 180.02562 * 18 17 16 44 44 H 1.09007 * 113.28324 * 166.93241 * 19 3 2 45 45 H 1.08998 * 113.46946 * 332.94145 * 20 19 3 46 46 H 1.09003 * 113.52811 * 202.50757 * 20 19 3 47 47 H 0.96999 * 120.00361 * 180.02562 * 25 24 22 48 48 H 1.08996 * 113.46773 * 87.44107 * 30 21 20 49 49 H 1.08997 * 113.46464 * 217.88219 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1415 2.0523 -1.1622 5 8 2.4545 3.2241 -1.1555 6 6 1.8905 1.3469 -2.4701 7 1 1.1268 0.5788 -2.3477 8 6 3.2014 0.7263 -3.0112 9 6 3.6673 1.7999 -4.0327 10 8 2.4329 2.2649 -4.6197 11 6 1.4708 2.3567 -3.5557 12 1 1.4697 3.3656 -3.1430 13 6 0.0973 2.0130 -4.0717 14 6 -0.0770 1.0092 -5.0122 15 6 -1.3522 0.7185 -5.4584 16 7 -2.3940 1.3899 -5.0080 17 6 -2.2653 2.3543 -4.1178 18 6 -1.0217 2.6969 -3.6215 19 6 2.3727 2.0328 1.2633 20 6 1.2151 2.1329 2.2663 21 7 1.5962 0.8010 2.7599 22 6 0.9552 -0.2466 3.3656 23 1 -0.0819 -0.1524 3.6520 24 6 1.6383 -1.4297 3.6115 25 7 2.9269 -1.5110 3.3557 26 14 0.7290 -2.9066 4.3053 27 1 0.3073 -3.7955 3.1929 28 1 1.6258 -3.6537 5.2232 29 1 -0.4692 -2.4445 5.0510 30 6 2.9699 1.0919 2.3227 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 3.9326 0.6037 -2.2122 37 1 3.0060 -0.2246 -3.5069 38 1 4.3093 1.3534 -4.7921 39 1 4.1834 2.6162 -3.5273 40 1 0.7728 0.4591 -5.3886 41 1 -1.4969 -0.0652 -6.1874 42 1 -3.1418 2.8819 -3.7720 43 1 -0.9228 3.4874 -2.8923 44 1 2.9286 2.9607 1.1284 45 1 0.2328 2.1563 1.7945 46 1 1.3466 2.9236 3.0050 47 1 3.4042 -2.3378 3.5271 48 1 3.5650 1.6082 3.0758 49 1 3.4825 0.2284 1.8988 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000950350404.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:22 Heat of formation + Delta-G solvation = 14.356779 kcal Electronic energy + Delta-G solvation = -32014.193586 eV Core-core repulsion = 27943.280841 eV Total energy + Delta-G solvation = -4070.912745 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.16077 -41.09527 -40.16744 -38.85328 -36.14383 -34.38910 -34.18892 -33.10766 -32.12776 -31.44177 -29.80388 -29.28154 -26.55227 -26.01136 -24.93716 -24.51731 -24.05400 -23.19854 -22.69743 -21.15619 -19.69492 -18.93412 -18.52382 -17.95614 -17.67460 -17.27256 -16.83032 -16.66487 -16.50864 -16.16942 -15.76074 -15.62587 -15.56107 -15.13520 -14.82544 -14.58040 -14.49131 -14.47402 -14.43465 -14.01071 -13.72676 -13.36248 -13.11211 -12.97888 -12.92436 -12.83923 -12.73208 -12.57429 -12.39042 -12.24719 -12.08382 -11.98208 -11.79386 -11.66054 -11.26589 -11.02795 -10.92913 -10.72780 -10.44647 -10.43735 -10.08027 -9.55742 -8.87894 -7.85771 -5.17846 0.17266 0.21283 1.46487 1.48542 1.50919 1.57487 1.91738 2.49139 2.63801 2.94286 3.32435 3.35446 3.40811 3.43253 3.51592 3.60326 3.79386 3.86852 3.92765 3.95967 4.16711 4.20672 4.21500 4.25833 4.34629 4.40772 4.49162 4.52736 4.63346 4.66880 4.72179 4.77259 4.79603 4.81241 4.86144 4.91296 4.93458 4.97694 5.01301 5.04537 5.25773 5.34371 5.41191 5.45192 5.50999 5.72096 5.75784 5.75812 5.93021 6.52371 6.95093 7.01389 7.09328 7.63952 8.63091 9.30413 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012703 B = 0.003528 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.746645 B = 7935.099542 C = 8788.411348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.105 3.895 3 N -0.567 5.567 4 C 0.523 3.477 5 O -0.575 6.575 6 C -0.131 4.131 7 H 0.116 0.884 8 C -0.135 4.135 9 C 0.047 3.953 10 O -0.372 6.372 11 C 0.137 3.863 12 H 0.079 0.921 13 C -0.054 4.054 14 C -0.148 4.148 15 C 0.091 3.909 16 N -0.507 5.507 17 C 0.093 3.907 18 C -0.169 4.169 19 C 0.102 3.898 20 C 0.108 3.892 21 N -0.619 5.619 22 C -0.212 4.212 23 H 0.077 0.923 24 C -0.048 4.048 25 N -0.944 5.944 26 Si 0.962 3.038 27 H -0.284 1.284 28 H -0.301 1.301 29 H -0.276 1.276 30 C 0.144 3.856 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.083 0.917 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.153 0.847 41 H 0.182 0.818 42 H 0.176 0.824 43 H 0.139 0.861 44 H 0.104 0.896 45 H 0.048 0.952 46 H 0.052 0.948 47 H 0.248 0.752 48 H 0.029 0.971 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.690 3.839 -17.537 18.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.017 4.017 3 N -0.297 5.297 4 C 0.312 3.688 5 O -0.456 6.456 6 C -0.153 4.153 7 H 0.134 0.866 8 C -0.173 4.173 9 C -0.029 4.029 10 O -0.291 6.291 11 C 0.078 3.922 12 H 0.097 0.903 13 C -0.062 4.062 14 C -0.167 4.167 15 C -0.065 4.065 16 N -0.217 5.217 17 C -0.063 4.063 18 C -0.189 4.189 19 C -0.004 4.004 20 C -0.019 4.019 21 N -0.345 5.345 22 C -0.340 4.340 23 H 0.095 0.905 24 C -0.242 4.242 25 N -0.593 5.593 26 Si 0.792 3.208 27 H -0.211 1.211 28 H -0.228 1.228 29 H -0.201 1.201 30 C 0.018 3.982 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.134 0.866 38 H 0.145 0.855 39 H 0.074 0.926 40 H 0.171 0.829 41 H 0.199 0.801 42 H 0.193 0.807 43 H 0.157 0.843 44 H 0.122 0.878 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.057 0.943 48 H 0.046 0.954 49 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.458 3.953 -17.898 18.653 hybrid contribution 0.654 -0.509 1.842 2.020 sum -2.804 3.444 -16.057 16.659 Atomic orbital electron populations 1.21993 0.95482 1.02001 1.00989 1.21669 0.94876 0.81277 1.03884 1.47475 1.62819 1.14570 1.04800 1.20612 0.76283 0.86357 0.85558 1.90638 1.50154 1.17154 1.87665 1.22704 1.01935 0.98924 0.91689 0.86603 1.23219 0.93953 1.00566 0.99572 1.23808 0.86855 0.95486 0.96757 1.88867 1.21198 1.88097 1.30924 1.21345 0.86286 0.98514 0.86009 0.90339 1.20267 0.94082 0.95574 0.96266 1.22163 0.99685 0.97758 0.97117 1.23227 0.87660 0.97812 0.97834 1.67718 1.35206 1.07263 1.11480 1.23060 0.97289 0.93561 0.92421 1.22157 0.93410 1.01450 1.01879 1.22418 0.97899 0.96395 0.83657 1.22952 0.97197 0.88135 0.93608 1.45881 1.05880 1.12105 1.70619 1.19060 0.94204 0.89515 1.31189 0.90507 1.25299 0.96352 0.99735 1.02812 1.69961 1.07730 1.26379 1.55190 0.85307 0.77505 0.80307 0.77700 1.21062 1.22788 1.20116 1.22485 0.88804 0.95212 0.91711 0.93268 0.92987 0.91677 0.90164 0.89013 0.89793 0.86627 0.85458 0.92614 0.82909 0.80142 0.80669 0.84298 0.87777 0.93409 0.93066 0.94309 0.95355 0.92543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.59 9.93 71.98 0.72 -3.87 16 2 C 0.11 3.49 4.96 86.38 0.43 3.92 16 3 N -0.57 -18.95 2.73 -796.68 -2.17 -21.12 16 4 C 0.52 16.20 6.65 87.66 0.58 16.78 16 5 O -0.58 -20.86 15.14 -3.04 -0.05 -20.91 16 6 C -0.13 -3.11 2.11 -10.55 -0.02 -3.13 16 7 H 0.12 2.62 5.16 -2.39 -0.01 2.61 16 8 C -0.14 -2.56 6.51 32.02 0.21 -2.35 16 9 C 0.05 0.88 7.73 72.79 0.56 1.44 16 10 O -0.37 -8.57 10.55 -148.98 -1.57 -10.14 16 11 C 0.14 3.30 3.22 30.22 0.10 3.39 16 12 H 0.08 2.25 6.66 -2.38 -0.02 2.23 16 13 C -0.05 -1.19 4.80 -19.67 -0.09 -1.29 16 14 C -0.15 -2.83 9.47 22.36 0.21 -2.61 16 15 C 0.09 1.71 11.18 84.68 0.95 2.66 16 16 N -0.51 -11.38 10.36 -195.84 -2.03 -13.41 16 17 C 0.09 1.91 11.18 84.68 0.95 2.86 16 18 C -0.17 -3.66 9.79 22.36 0.22 -3.44 16 19 C 0.10 3.76 4.65 45.55 0.21 3.97 16 20 C 0.11 4.17 7.80 83.18 0.65 4.82 16 21 N -0.62 -28.46 2.39 -738.05 -1.76 -30.22 16 22 C -0.21 -10.69 10.19 84.03 0.86 -9.83 16 23 H 0.08 3.84 7.83 -2.91 -0.02 3.81 16 24 C -0.05 -2.48 5.45 84.86 0.46 -2.02 16 25 N -0.94 -51.59 11.48 21.65 0.25 -51.34 16 26 Si 0.96 42.53 29.56 68.60 2.03 44.56 16 27 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 28 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 29 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 30 C 0.14 6.32 6.50 83.27 0.54 6.86 16 31 H 0.05 1.77 6.13 -2.39 -0.01 1.76 16 32 H 0.05 1.42 7.20 -2.39 -0.02 1.40 16 33 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 2.22 6.47 -2.39 -0.02 2.20 16 35 H 0.09 3.92 5.05 -2.39 -0.01 3.90 16 36 H 0.08 1.72 7.86 -2.39 -0.02 1.71 16 37 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 38 H 0.13 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.15 2.38 7.81 -2.91 -0.02 2.36 16 41 H 0.18 2.28 8.06 -2.91 -0.02 2.25 16 42 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 43 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 44 H 0.10 3.73 7.33 -2.38 -0.02 3.72 16 45 H 0.05 1.82 6.75 -2.39 -0.02 1.80 16 46 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.25 13.38 8.31 -92.71 -0.77 12.61 16 48 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.06 2.74 6.26 -2.39 -0.01 2.72 16 Total: -1.00 -63.25 387.53 3.18 -60.07 By element: Atomic # 1 Polarization: 23.37 SS G_CDS: 0.96 Total: 24.33 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 7.52 Total: 18.17 kcal Atomic # 7 Polarization: -110.37 SS G_CDS: -5.72 Total: -116.09 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -1.62 Total: -31.05 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -63.25 3.18 -60.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000950350404.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.428 kcal (2) G-P(sol) polarization free energy of solvation -63.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds