Wall clock time and date at job start Wed Apr 1 2020 03:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47411 * 2 1 4 4 C 1.34779 * 119.99895 * 100.26354 * 3 2 1 5 5 O 1.21590 * 120.00344 * 187.21435 * 4 3 2 6 6 C 1.47530 * 120.00067 * 7.22059 * 4 3 2 7 7 C 1.39682 * 120.19584 * 328.35900 * 6 4 3 8 8 C 1.37802 * 119.92138 * 179.97438 * 7 6 4 9 9 C 1.38562 * 120.32974 * 0.02562 * 8 7 6 10 10 C 1.38026 * 120.39976 * 0.02562 * 9 8 7 11 11 C 1.38847 * 120.07620 * 359.97438 * 10 9 8 12 12 N 1.39282 * 120.16599 * 179.97438 * 11 10 9 13 13 C 1.46501 * 120.00307 * 90.00175 * 12 11 10 14 14 C 1.34785 * 119.99870 * 269.99939 * 12 11 10 15 15 C 1.50697 * 119.99949 * 5.06826 * 14 12 11 16 16 O 1.21275 * 119.99793 * 185.06527 * 14 12 11 17 17 C 1.46498 * 120.00259 * 280.26474 * 3 2 1 18 18 C 1.53947 * 113.74265 * 222.81197 * 17 3 2 19 19 N 1.47808 * 86.03685 * 222.08401 * 18 17 3 20 20 C 1.36939 * 134.45770 * 204.64282 * 19 18 17 21 21 H 1.07997 * 120.00109 * 184.83038 * 20 19 18 22 22 C 1.38810 * 119.99598 * 4.83619 * 20 19 18 23 23 N 1.31624 * 120.00358 * 5.04631 * 22 20 19 24 24 Si 1.86801 * 119.99908 * 185.05569 * 22 20 19 25 25 H 1.48500 * 109.47625 * 94.99277 * 24 22 20 26 26 H 1.48495 * 109.47328 * 214.99781 * 24 22 20 27 27 H 1.48504 * 109.46932 * 334.99418 * 24 22 20 28 28 C 1.47582 * 91.05334 * 24.54868 * 19 18 17 29 29 H 1.09000 * 109.46895 * 300.00223 * 1 2 3 30 30 H 1.09001 * 109.46586 * 59.99957 * 1 2 3 31 31 H 1.08993 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47633 * 239.99843 * 2 1 3 33 33 H 1.09004 * 109.47016 * 120.00324 * 2 1 3 34 34 H 1.08002 * 120.04108 * 0.25588 * 7 6 4 35 35 H 1.08003 * 119.83625 * 179.97438 * 8 7 6 36 36 H 1.07998 * 119.80129 * 179.97438 * 9 8 7 37 37 H 1.08005 * 119.95941 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47066 * 95.05931 * 13 12 11 39 39 H 1.08998 * 109.47002 * 215.06104 * 13 12 11 40 40 H 1.08997 * 109.46583 * 335.05782 * 13 12 11 41 41 H 1.09001 * 109.47024 * 94.84094 * 15 14 12 42 42 H 1.09000 * 109.47011 * 214.83811 * 15 14 12 43 43 H 1.09000 * 109.47330 * 334.83775 * 15 14 12 44 44 H 1.08999 * 112.94289 * 354.40680 * 17 3 2 45 45 H 1.08999 * 113.77066 * 336.35006 * 18 17 3 46 46 H 1.09004 * 113.76596 * 107.74724 * 18 17 3 47 47 H 0.97002 * 119.99691 * 180.02562 * 23 22 20 48 48 H 1.08994 * 113.77354 * 221.15416 * 28 19 18 49 49 H 1.09003 * 113.76969 * 89.75062 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4391 1.9472 1.1486 5 8 2.7201 3.1298 1.1763 6 6 2.5589 1.1317 2.3722 7 6 1.6944 0.0557 2.5867 8 6 1.8116 -0.7025 3.7314 9 6 2.7834 -0.4030 4.6726 10 6 3.6440 0.6578 4.4748 11 6 3.5408 1.4329 3.3274 12 7 4.4079 2.5041 3.1261 13 6 5.6782 2.2969 2.4262 14 6 4.0783 3.7315 3.5751 15 6 2.8277 3.9237 4.3936 16 8 4.7883 4.6812 3.3204 17 6 2.0495 2.1472 -1.2484 18 6 3.3363 2.9704 -1.4386 19 7 2.4517 4.0497 -1.9256 20 6 2.6204 5.1285 -2.7520 21 1 1.8128 5.8313 -2.8943 22 6 3.8294 5.3187 -3.4070 23 7 4.7786 4.4117 -3.3130 24 14 4.1094 6.8620 -4.4215 25 1 4.8036 7.8801 -3.5928 26 1 4.9453 6.5323 -5.6037 27 1 2.8017 7.4005 -4.8746 28 6 1.3136 3.4969 -1.1659 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 0.9379 -0.1845 1.8543 35 1 1.1422 -1.5339 3.8961 36 1 2.8674 -1.0027 5.5669 37 1 4.3991 0.8847 5.2129 38 1 5.5545 2.5367 1.3702 39 1 6.4411 2.9440 2.8589 40 1 5.9838 1.2557 2.5290 41 1 3.0778 3.8850 5.4538 42 1 2.3857 4.8922 4.1597 43 1 2.1150 3.1330 4.1593 44 1 1.7769 1.5513 -2.1194 45 1 3.8474 3.2086 -0.5058 46 1 4.0047 2.5709 -2.2013 47 1 5.6236 4.5448 -3.7705 48 1 0.3701 3.5169 -1.7112 49 1 1.2292 3.8900 -0.1527 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951012132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:51 Heat of formation + Delta-G solvation = 45.006054 kcal Electronic energy + Delta-G solvation = -32460.006888 eV Core-core repulsion = 28390.423195 eV Total energy + Delta-G solvation = -4069.583693 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.24286 -40.98466 -39.68217 -38.29415 -37.25599 -36.14984 -34.27999 -32.20254 -31.63213 -31.40724 -30.68556 -29.29939 -27.25052 -26.61415 -25.83936 -24.68100 -23.91496 -23.63315 -22.16691 -20.76212 -19.89995 -18.83319 -18.34760 -18.06457 -17.57463 -17.37822 -17.05610 -16.74128 -16.47605 -16.23334 -15.90766 -15.67831 -15.28059 -15.03535 -14.66004 -14.45133 -14.35662 -14.07089 -13.81172 -13.72671 -13.67328 -13.54469 -13.43939 -13.20532 -13.04787 -12.99303 -12.89686 -12.77870 -12.68889 -12.44143 -12.19413 -12.03120 -11.93953 -11.69250 -11.54178 -11.20032 -11.03343 -10.59229 -9.94593 -9.84209 -9.75621 -9.47591 -8.91308 -7.94221 -5.29231 -0.12405 0.26807 1.36576 1.41979 1.49691 1.52358 1.82720 1.98401 2.03185 2.44387 2.74763 3.23010 3.46085 3.51356 3.58076 3.80072 3.87429 4.09168 4.15931 4.16920 4.21981 4.32660 4.34821 4.37536 4.42885 4.46391 4.51384 4.55124 4.60699 4.65251 4.71740 4.80520 4.86334 4.90448 4.96240 4.97709 5.00903 5.19669 5.27032 5.31404 5.38040 5.41818 5.44686 5.45647 5.51736 5.84595 5.88249 5.89767 6.40123 6.53370 6.85733 7.10174 7.29319 7.55190 8.53047 9.21385 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012343 B = 0.004129 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2267.946973 B = 6779.441827 C = 8247.955977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 N -0.594 5.594 4 C 0.538 3.462 5 O -0.553 6.553 6 C -0.147 4.147 7 C -0.106 4.106 8 C -0.105 4.105 9 C -0.074 4.074 10 C -0.119 4.119 11 C 0.153 3.847 12 N -0.570 5.570 13 C 0.097 3.903 14 C 0.525 3.475 15 C -0.154 4.154 16 O -0.597 6.597 17 C 0.133 3.867 18 C 0.151 3.849 19 N -0.631 5.631 20 C -0.237 4.237 21 H 0.080 0.920 22 C -0.067 4.067 23 N -0.951 5.951 24 Si 0.981 3.019 25 H -0.296 1.296 26 H -0.285 1.285 27 H -0.261 1.261 28 C 0.117 3.883 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.175 0.825 35 H 0.174 0.826 36 H 0.171 0.829 37 H 0.145 0.855 38 H 0.017 0.983 39 H 0.067 0.933 40 H 0.104 0.896 41 H 0.124 0.876 42 H 0.078 0.922 43 H 0.087 0.913 44 H 0.124 0.876 45 H 0.014 0.986 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.053 0.947 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.861 -22.280 19.852 31.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.058 4.058 3 N -0.327 5.327 4 C 0.327 3.673 5 O -0.432 6.432 6 C -0.152 4.152 7 C -0.124 4.124 8 C -0.123 4.123 9 C -0.092 4.092 10 C -0.138 4.138 11 C 0.062 3.938 12 N -0.299 5.299 13 C -0.045 4.045 14 C 0.318 3.682 15 C -0.214 4.214 16 O -0.477 6.477 17 C 0.028 3.972 18 C 0.025 3.975 19 N -0.358 5.358 20 C -0.365 4.365 21 H 0.098 0.902 22 C -0.260 4.260 23 N -0.599 5.599 24 Si 0.808 3.192 25 H -0.223 1.223 26 H -0.211 1.211 27 H -0.185 1.185 28 C -0.009 4.009 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.102 0.898 33 H 0.144 0.856 34 H 0.192 0.808 35 H 0.191 0.809 36 H 0.188 0.812 37 H 0.163 0.837 38 H 0.035 0.965 39 H 0.086 0.914 40 H 0.123 0.877 41 H 0.142 0.858 42 H 0.097 0.903 43 H 0.106 0.894 44 H 0.142 0.858 45 H 0.032 0.968 46 H 0.059 0.941 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -9.186 -20.948 19.466 30.035 hybrid contribution 0.920 1.773 -1.216 2.338 sum -8.267 -19.175 18.250 27.732 Atomic orbital electron populations 1.22253 0.93924 1.04345 1.02429 1.22809 0.95976 0.80910 1.06065 1.48004 1.63083 1.15060 1.06516 1.18875 0.77075 0.87150 0.84176 1.90895 1.49537 1.17508 1.85234 1.20305 1.00615 0.99338 0.94894 1.22414 0.98580 0.92055 0.99381 1.21695 0.98537 1.00089 0.91940 1.21704 0.92578 0.94836 1.00122 1.21561 1.01168 0.95590 0.95454 1.17746 0.91365 0.89830 0.94891 1.45023 1.19851 1.07784 1.57242 1.21562 0.84658 1.03088 0.95208 1.21346 0.87251 0.81100 0.78541 1.21791 0.93911 1.04428 1.01221 1.90669 1.55715 1.40959 1.60383 1.23279 0.96802 0.90712 0.86394 1.22522 0.93364 0.86687 0.94908 1.46029 1.08774 1.30029 1.50946 1.19412 0.99008 1.00891 1.17216 0.90245 1.25677 0.96196 1.01892 1.02266 1.70041 1.05955 1.35781 1.48145 0.85034 0.78158 0.78486 0.77523 1.22347 1.21106 1.18549 1.22964 0.91682 0.91659 0.94627 0.92018 0.92998 0.87658 0.89802 0.85611 0.80843 0.80864 0.81202 0.83732 0.96452 0.91402 0.87721 0.85785 0.90320 0.89384 0.85820 0.96798 0.94080 0.94345 0.92866 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.17 71.98 0.66 -1.66 16 2 C 0.06 1.15 5.59 86.38 0.48 1.63 16 3 N -0.59 -18.59 2.75 -807.26 -2.22 -20.81 16 4 C 0.54 18.82 6.72 86.69 0.58 19.40 16 5 O -0.55 -25.93 10.30 -4.00 -0.04 -25.98 16 6 C -0.15 -3.57 5.32 -19.99 -0.11 -3.68 16 7 C -0.11 -1.46 7.47 22.52 0.17 -1.29 16 8 C -0.11 -0.70 10.02 22.24 0.22 -0.48 16 9 C -0.07 -0.52 10.03 22.30 0.22 -0.29 16 10 C -0.12 -1.66 9.96 22.37 0.22 -1.43 16 11 C 0.15 3.62 3.31 38.60 0.13 3.75 16 12 N -0.57 -18.39 1.81 -653.89 -1.19 -19.58 16 13 C 0.10 3.21 10.33 127.77 1.32 4.53 16 14 C 0.53 19.72 6.29 87.65 0.55 20.27 16 15 C -0.15 -4.21 9.88 71.23 0.70 -3.51 16 16 O -0.60 -29.05 16.82 -3.01 -0.05 -29.10 16 17 C 0.13 5.41 4.57 46.75 0.21 5.62 16 18 C 0.15 8.36 6.99 86.44 0.60 8.97 16 19 N -0.63 -37.19 3.70 -716.71 -2.65 -39.84 16 20 C -0.24 -14.95 10.69 84.03 0.90 -14.05 16 21 H 0.08 4.81 7.83 -2.91 -0.02 4.78 16 22 C -0.07 -4.24 5.50 84.86 0.47 -3.78 16 23 N -0.95 -62.87 11.29 21.65 0.24 -62.62 16 24 Si 0.98 50.28 29.56 68.60 2.03 52.31 16 25 H -0.30 -15.38 7.11 99.48 0.71 -14.68 16 26 H -0.28 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 28 C 0.12 5.52 8.27 86.49 0.72 6.24 16 29 H 0.06 0.85 7.13 -2.39 -0.02 0.83 16 30 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.13 1.72 3.90 -2.72 -0.01 1.71 16 34 H 0.17 1.85 2.86 -2.91 -0.01 1.84 16 35 H 0.17 -0.16 8.06 -2.91 -0.02 -0.18 16 36 H 0.17 -0.02 8.06 -2.91 -0.02 -0.05 16 37 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.07 2.29 7.66 -2.39 -0.02 2.28 16 40 H 0.10 2.54 8.01 -2.39 -0.02 2.52 16 41 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 42 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 43 H 0.09 2.17 6.55 -2.39 -0.02 2.15 16 44 H 0.12 4.53 8.07 -2.39 -0.02 4.51 16 45 H 0.01 0.88 5.79 -2.39 -0.01 0.87 16 46 H 0.04 2.49 6.87 -2.38 -0.02 2.47 16 47 H 0.25 15.78 8.31 -92.71 -0.77 15.01 16 48 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.03 1.77 6.23 -2.39 -0.01 1.75 16 Total: -1.00 -97.71 388.02 5.15 -92.56 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: 0.97 Total: 12.81 kcal Atomic # 6 Polarization: 32.19 SS G_CDS: 8.06 Total: 40.24 kcal Atomic # 7 Polarization: -137.03 SS G_CDS: -5.81 Total: -142.84 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.09 Total: -55.08 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 2.03 Total: 52.31 kcal Total: -97.71 5.15 -92.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951012132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.564 kcal (2) G-P(sol) polarization free energy of solvation -97.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds