Wall clock time and date at job start Wed Apr 1 2020 03:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47216 * 2 1 4 4 C 1.34775 * 120.00192 * 257.01392 * 3 2 1 5 5 O 1.21554 * 120.00493 * 184.94239 * 4 3 2 6 6 C 1.47850 * 119.99836 * 4.93846 * 4 3 2 7 7 C 1.39579 * 120.14115 * 47.06409 * 6 4 3 8 8 C 1.37961 * 119.85020 * 179.79130 * 7 6 4 9 9 C 1.38356 * 120.14623 * 0.48072 * 8 7 6 10 10 C 1.50698 * 119.85465 * 179.76847 * 9 8 7 11 11 C 1.52999 * 109.47042 * 269.97758 * 10 9 8 12 12 C 1.50698 * 109.47042 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00039 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00195 * 0.02562 * 12 11 10 15 15 C 1.38366 * 120.29004 * 359.74756 * 9 8 7 16 16 C 1.37948 * 120.14579 * 0.02562 * 15 9 8 17 17 C 1.46496 * 119.99956 * 77.01029 * 3 2 1 18 18 C 1.53505 * 114.20512 * 120.00142 * 17 3 2 19 19 N 1.47069 * 87.98267 * 87.71771 * 18 17 3 20 20 C 1.36939 * 136.05116 * 207.08225 * 19 18 17 21 21 H 1.07989 * 120.00327 * 3.71868 * 20 19 18 22 22 C 1.38817 * 119.99381 * 183.71610 * 20 19 18 23 23 N 1.31616 * 119.99681 * 171.01089 * 22 20 19 24 24 Si 1.86798 * 120.00341 * 351.01224 * 22 20 19 25 25 H 1.48495 * 109.46910 * 182.70928 * 24 22 20 26 26 H 1.48500 * 109.46863 * 302.71166 * 24 22 20 27 27 H 1.48502 * 109.47115 * 62.70767 * 24 22 20 28 28 C 1.47060 * 87.88814 * 27.34479 * 19 18 17 29 29 H 1.08997 * 109.47426 * 164.98590 * 1 2 3 30 30 H 1.09005 * 109.46913 * 284.98161 * 1 2 3 31 31 H 1.09002 * 109.47256 * 44.98157 * 1 2 3 32 32 H 1.09002 * 109.46564 * 240.00209 * 2 1 3 33 33 H 1.08993 * 109.47153 * 120.00445 * 2 1 3 34 34 H 1.07998 * 120.07681 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.92266 * 180.23206 * 8 7 6 36 36 H 1.08993 * 109.47189 * 29.98208 * 10 9 8 37 37 H 1.09000 * 109.46870 * 149.98005 * 10 9 8 38 38 H 1.08998 * 109.47117 * 299.99980 * 11 10 9 39 39 H 1.09000 * 109.47087 * 60.00379 * 11 10 9 40 40 H 0.97002 * 119.99985 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00098 * 179.97438 * 13 12 11 42 42 H 1.08003 * 119.92681 * 179.97438 * 15 9 8 43 43 H 1.08003 * 120.07558 * 179.97438 * 16 15 9 44 44 H 1.08998 * 113.28630 * 346.93496 * 17 3 2 45 45 H 1.09001 * 113.46325 * 332.93579 * 18 17 3 46 46 H 1.08996 * 113.51886 * 202.50723 * 18 17 3 47 47 H 0.96999 * 120.00105 * 5.10137 * 23 22 20 48 48 H 1.08997 * 113.47319 * 87.43231 * 28 19 18 49 49 H 1.08996 * 113.46691 * 217.88078 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4903 1.9291 -1.1373 5 8 2.9781 3.0423 -1.1189 6 6 2.4147 1.1761 -2.4074 7 6 1.2273 0.5423 -2.7769 8 6 1.1622 -0.1551 -3.9655 9 6 2.2735 -0.2354 -4.7857 10 6 2.1966 -1.0034 -6.0801 11 6 2.5906 -2.4609 -5.8325 12 6 2.5131 -3.2289 -7.1268 13 7 2.8179 -4.5415 -7.1507 14 8 2.1763 -2.6659 -8.1468 15 6 3.4550 0.3866 -4.4230 16 6 3.5321 1.0910 -3.2395 17 6 1.9937 2.1668 1.2362 18 6 3.3732 2.6558 1.6988 19 7 3.1787 3.8426 0.8523 20 6 3.9900 4.7253 0.1906 21 1 5.0597 4.5770 0.1866 22 6 3.4373 5.8109 -0.4751 23 7 4.2184 6.7532 -0.9592 24 14 1.5852 5.9343 -0.6840 25 1 1.2564 7.1435 -1.4807 26 1 1.0849 4.7263 -1.3881 27 1 0.9419 6.0310 0.6510 28 6 1.7300 3.6682 1.0347 29 1 -0.3634 -0.9925 -0.2662 30 1 -0.3633 0.2657 0.9928 31 1 -0.3634 0.7269 -0.7264 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.3605 0.6002 -2.1353 35 1 0.2429 -0.6428 -4.2543 36 1 1.1783 -0.9628 -6.4666 37 1 2.8786 -0.5609 -6.8061 38 1 3.6089 -2.5013 -5.4460 39 1 1.9085 -2.9033 -5.1065 40 1 3.0876 -4.9918 -6.3350 41 1 2.7677 -5.0360 -7.9837 42 1 4.3191 0.3197 -5.0676 43 1 4.4551 1.5757 -2.9573 44 1 1.3936 1.7116 2.0241 45 1 4.1929 2.0173 1.3695 46 1 3.4191 2.8848 2.7635 47 1 5.1823 6.6536 -0.9165 48 1 1.3416 4.1638 1.9243 49 1 1.1497 3.8920 0.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000951719023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:11 Heat of formation + Delta-G solvation = 60.823694 kcal Electronic energy + Delta-G solvation = -31053.194884 eV Core-core repulsion = 26984.297096 eV Total energy + Delta-G solvation = -4068.897788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48265 -39.90655 -38.91486 -36.68369 -35.37995 -34.11867 -33.84340 -32.04862 -30.93282 -30.06321 -29.87510 -27.51856 -25.52618 -25.22603 -23.30378 -22.99179 -22.54446 -21.64192 -20.63303 -20.01509 -18.31437 -17.73326 -17.26351 -17.19582 -16.96198 -16.18368 -15.79524 -15.49508 -15.15749 -14.91321 -14.52489 -14.38451 -14.15864 -13.85509 -13.56652 -13.51717 -13.28971 -13.13335 -13.03050 -12.96005 -12.87407 -12.27553 -12.00102 -11.82444 -11.54974 -11.38688 -11.24822 -11.16521 -11.02491 -10.79913 -10.73514 -10.35499 -10.33683 -10.21894 -10.11121 -9.18786 -8.99359 -8.89562 -8.75470 -8.62619 -8.21986 -7.95365 -6.61070 -5.94782 -2.77657 1.12272 1.44439 2.26903 3.11140 3.33233 3.36012 3.60103 3.71615 3.84111 3.99362 4.39930 4.66044 4.68310 4.76456 4.90878 4.92111 4.96211 4.97394 5.01733 5.08084 5.10678 5.24517 5.35195 5.41232 5.43545 5.48617 5.63488 5.70223 5.73670 5.77431 5.82263 5.91714 5.98018 6.07598 6.13651 6.17199 6.32147 6.34631 6.38403 6.40033 6.50616 6.56186 6.58360 6.66038 6.89080 6.97248 7.29383 7.39846 7.86529 7.96727 8.54589 9.04885 9.32509 9.89378 10.72161 11.59825 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002941 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.157471 B = 9519.583007 C =10410.293374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.107 3.893 3 N -0.598 5.598 4 C 0.507 3.493 5 O -0.407 6.407 6 C -0.108 4.108 7 C -0.104 4.104 8 C -0.123 4.123 9 C -0.079 4.079 10 C -0.065 4.065 11 C -0.136 4.136 12 C 0.516 3.484 13 N -0.860 5.860 14 O -0.543 6.543 15 C -0.119 4.119 16 C -0.070 4.070 17 C 0.104 3.896 18 C 0.107 3.893 19 N -0.599 5.599 20 C -0.242 4.242 21 H 0.072 0.928 22 C -0.026 4.026 23 N -0.954 5.954 24 Si 1.083 2.917 25 H -0.307 1.307 26 H -0.293 1.293 27 H -0.301 1.301 28 C 0.090 3.910 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.134 0.866 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.080 0.920 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.402 0.598 41 H 0.400 0.600 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.090 0.910 45 H 0.039 0.961 46 H 0.042 0.958 47 H 0.253 0.747 48 H 0.046 0.954 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.945 -27.294 -3.990 28.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.291 3.709 5 O -0.273 6.273 6 C -0.112 4.112 7 C -0.122 4.122 8 C -0.141 4.141 9 C -0.080 4.080 10 C -0.102 4.102 11 C -0.176 4.176 12 C 0.301 3.699 13 N -0.423 5.423 14 O -0.419 6.419 15 C -0.138 4.138 16 C -0.089 4.089 17 C -0.002 4.002 18 C -0.021 4.021 19 N -0.326 5.326 20 C -0.369 4.369 21 H 0.090 0.910 22 C -0.222 4.222 23 N -0.600 5.600 24 Si 0.920 3.080 25 H -0.236 1.236 26 H -0.222 1.222 27 H -0.229 1.229 28 C -0.037 4.037 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.152 0.848 35 H 0.140 0.860 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.230 0.770 41 H 0.230 0.770 42 H 0.142 0.858 43 H 0.148 0.852 44 H 0.108 0.892 45 H 0.058 0.942 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.064 0.936 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -7.918 -24.946 -5.264 26.696 hybrid contribution 1.295 -1.687 0.694 2.237 sum -6.623 -26.633 -4.570 27.822 Atomic orbital electron populations 1.22402 0.96560 1.01818 1.02567 1.21534 0.93951 0.83381 1.02800 1.47440 1.64881 1.12694 1.08489 1.18799 0.80753 0.88219 0.83112 1.91507 1.36586 1.15838 1.83326 1.20299 0.95013 0.99003 0.96861 1.21683 0.97690 0.95821 0.96966 1.20910 0.98067 1.00680 0.94480 1.19899 0.93839 0.98293 0.95927 1.20325 1.03756 0.91888 0.94274 1.21681 1.04616 0.96127 0.95217 1.20827 0.75584 0.82250 0.91252 1.43939 1.72457 1.11035 1.14908 1.90767 1.46713 1.68835 1.35613 1.20967 0.97592 0.98485 0.96710 1.21228 0.98282 0.96222 0.93158 1.22670 0.98998 0.92721 0.85771 1.22731 0.94900 0.89801 0.94682 1.45642 1.00303 1.32258 1.54442 1.19754 0.88987 1.01899 1.26225 0.91011 1.25362 1.06402 0.92375 0.98093 1.70945 1.04528 1.32232 1.52296 0.83524 0.75980 0.73444 0.75049 1.23557 1.22233 1.22908 1.23031 0.89917 0.91550 0.99164 0.91851 0.92225 0.91857 0.89995 0.91273 0.84828 0.85981 0.90159 0.90107 0.88457 0.88502 0.77005 0.76965 0.85809 0.85247 0.89205 0.94232 0.94078 0.93677 0.93638 0.92726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.23 37.16 0.34 -1.27 16 2 C 0.11 1.19 5.61 -4.04 -0.02 1.16 16 3 N -0.60 -9.75 2.77 -166.84 -0.46 -10.22 16 4 C 0.51 10.02 6.75 -12.33 -0.08 9.94 16 5 O -0.41 -10.38 8.91 5.32 0.05 -10.33 16 6 C -0.11 -1.76 4.78 -104.97 -0.50 -2.26 16 7 C -0.10 -1.34 7.66 -39.18 -0.30 -1.64 16 8 C -0.12 -1.34 9.68 -39.64 -0.38 -1.72 16 9 C -0.08 -0.86 5.14 -104.53 -0.54 -1.40 16 10 C -0.06 -0.59 4.63 -27.88 -0.13 -0.72 16 11 C -0.14 -0.88 5.68 -27.88 -0.16 -1.04 16 12 C 0.52 4.15 8.10 -10.99 -0.09 4.06 16 13 N -0.86 -3.65 8.87 31.22 0.28 -3.37 16 14 O -0.54 -6.94 16.82 5.56 0.09 -6.84 16 15 C -0.12 -1.47 9.68 -39.64 -0.38 -1.86 16 16 C -0.07 -1.09 9.71 -39.19 -0.38 -1.47 16 17 C 0.10 1.79 4.82 -67.67 -0.33 1.47 16 18 C 0.11 2.17 8.21 -8.50 -0.07 2.10 16 19 N -0.60 -15.43 2.07 -184.60 -0.38 -15.81 16 20 C -0.24 -7.41 8.87 -15.06 -0.13 -7.55 16 21 H 0.07 2.35 8.05 -52.49 -0.42 1.93 16 22 C -0.03 -0.85 5.31 -17.43 -0.09 -0.94 16 23 N -0.95 -32.50 13.70 55.49 0.76 -31.74 16 24 Si 1.08 30.24 23.99 -169.99 -4.08 26.16 16 25 H -0.31 -8.77 7.11 56.52 0.40 -8.37 16 26 H -0.29 -7.95 6.02 56.52 0.34 -7.61 16 27 H -0.30 -7.82 6.65 56.52 0.38 -7.45 16 28 C 0.09 2.00 4.94 -8.37 -0.04 1.96 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.67 6.01 -51.93 -0.31 0.36 16 32 H 0.08 0.87 5.57 -51.93 -0.29 0.58 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.13 1.57 4.26 -52.49 -0.22 1.35 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.08 0.77 8.04 -51.93 -0.42 0.35 16 37 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 38 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 0.50 8.83 -40.82 -0.36 0.14 16 41 H 0.40 1.47 8.93 -40.82 -0.36 1.10 16 42 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 43 H 0.13 2.18 8.06 -52.48 -0.42 1.75 16 44 H 0.09 1.20 8.10 -51.93 -0.42 0.78 16 45 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.25 8.54 8.73 -40.82 -0.36 8.18 16 48 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 49 H 0.06 1.32 3.67 -51.93 -0.19 1.13 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -41.11 383.16 -8.56 -49.67 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -7.30 Total: -2.12 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.29 Total: -1.18 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 0.19 Total: -61.13 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: 0.14 Total: -17.17 kcal Atomic # 14 Polarization: 30.24 SS G_CDS: -4.08 Total: 26.16 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -41.11 -8.56 -49.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951719023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.493 kcal (2) G-P(sol) polarization free energy of solvation -41.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds