Wall clock time and date at job start Wed Apr 1 2020 03:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46494 * 109.47216 * 2 1 4 4 C 1.34775 * 120.00192 * 257.01392 * 3 2 1 5 5 O 1.21554 * 120.00493 * 184.94239 * 4 3 2 6 6 C 1.47850 * 119.99836 * 4.93846 * 4 3 2 7 7 C 1.39579 * 120.14115 * 47.06409 * 6 4 3 8 8 C 1.37961 * 119.85020 * 179.79130 * 7 6 4 9 9 C 1.38356 * 120.14623 * 0.48072 * 8 7 6 10 10 C 1.50698 * 119.85465 * 179.76847 * 9 8 7 11 11 C 1.52999 * 109.47042 * 269.97758 * 10 9 8 12 12 C 1.50698 * 109.47042 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00039 * 180.02562 * 12 11 10 14 14 O 1.21278 * 120.00195 * 0.02562 * 12 11 10 15 15 C 1.38366 * 120.29004 * 359.74756 * 9 8 7 16 16 C 1.37948 * 120.14579 * 0.02562 * 15 9 8 17 17 C 1.46496 * 119.99956 * 77.01029 * 3 2 1 18 18 C 1.53505 * 114.20512 * 120.00142 * 17 3 2 19 19 N 1.47069 * 87.98267 * 87.71771 * 18 17 3 20 20 C 1.36939 * 136.05116 * 207.08225 * 19 18 17 21 21 H 1.07989 * 120.00327 * 3.71868 * 20 19 18 22 22 C 1.38817 * 119.99381 * 183.71610 * 20 19 18 23 23 N 1.31616 * 119.99681 * 171.01089 * 22 20 19 24 24 Si 1.86798 * 120.00341 * 351.01224 * 22 20 19 25 25 H 1.48495 * 109.46910 * 182.70928 * 24 22 20 26 26 H 1.48500 * 109.46863 * 302.71166 * 24 22 20 27 27 H 1.48502 * 109.47115 * 62.70767 * 24 22 20 28 28 C 1.47060 * 87.88814 * 27.34479 * 19 18 17 29 29 H 1.08997 * 109.47426 * 164.98590 * 1 2 3 30 30 H 1.09005 * 109.46913 * 284.98161 * 1 2 3 31 31 H 1.09002 * 109.47256 * 44.98157 * 1 2 3 32 32 H 1.09002 * 109.46564 * 240.00209 * 2 1 3 33 33 H 1.08993 * 109.47153 * 120.00445 * 2 1 3 34 34 H 1.07998 * 120.07681 * 359.97438 * 7 6 4 35 35 H 1.08000 * 119.92266 * 180.23206 * 8 7 6 36 36 H 1.08993 * 109.47189 * 29.98208 * 10 9 8 37 37 H 1.09000 * 109.46870 * 149.98005 * 10 9 8 38 38 H 1.08998 * 109.47117 * 299.99980 * 11 10 9 39 39 H 1.09000 * 109.47087 * 60.00379 * 11 10 9 40 40 H 0.97002 * 119.99985 * 359.97438 * 13 12 11 41 41 H 0.97001 * 120.00098 * 179.97438 * 13 12 11 42 42 H 1.08003 * 119.92681 * 179.97438 * 15 9 8 43 43 H 1.08003 * 120.07558 * 179.97438 * 16 15 9 44 44 H 1.08998 * 113.28630 * 346.93496 * 17 3 2 45 45 H 1.09001 * 113.46325 * 332.93579 * 18 17 3 46 46 H 1.08996 * 113.51886 * 202.50723 * 18 17 3 47 47 H 0.96999 * 120.00105 * 5.10137 * 23 22 20 48 48 H 1.08997 * 113.47319 * 87.43231 * 28 19 18 49 49 H 1.08996 * 113.46691 * 217.88078 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4903 1.9291 -1.1373 5 8 2.9781 3.0423 -1.1189 6 6 2.4147 1.1761 -2.4074 7 6 1.2273 0.5423 -2.7769 8 6 1.1622 -0.1551 -3.9655 9 6 2.2735 -0.2354 -4.7857 10 6 2.1966 -1.0034 -6.0801 11 6 2.5906 -2.4609 -5.8325 12 6 2.5131 -3.2289 -7.1268 13 7 2.8179 -4.5415 -7.1507 14 8 2.1763 -2.6659 -8.1468 15 6 3.4550 0.3866 -4.4230 16 6 3.5321 1.0910 -3.2395 17 6 1.9937 2.1668 1.2362 18 6 3.3732 2.6558 1.6988 19 7 3.1787 3.8426 0.8523 20 6 3.9900 4.7253 0.1906 21 1 5.0597 4.5770 0.1866 22 6 3.4373 5.8109 -0.4751 23 7 4.2184 6.7532 -0.9592 24 14 1.5852 5.9343 -0.6840 25 1 1.2564 7.1435 -1.4807 26 1 1.0849 4.7263 -1.3881 27 1 0.9419 6.0310 0.6510 28 6 1.7300 3.6682 1.0347 29 1 -0.3634 -0.9925 -0.2662 30 1 -0.3633 0.2657 0.9928 31 1 -0.3634 0.7269 -0.7264 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 0.3605 0.6002 -2.1353 35 1 0.2429 -0.6428 -4.2543 36 1 1.1783 -0.9628 -6.4666 37 1 2.8786 -0.5609 -6.8061 38 1 3.6089 -2.5013 -5.4460 39 1 1.9085 -2.9033 -5.1065 40 1 3.0876 -4.9918 -6.3350 41 1 2.7677 -5.0360 -7.9837 42 1 4.3191 0.3197 -5.0676 43 1 4.4551 1.5757 -2.9573 44 1 1.3936 1.7116 2.0241 45 1 4.1929 2.0173 1.3695 46 1 3.4191 2.8848 2.7635 47 1 5.1823 6.6536 -0.9165 48 1 1.3416 4.1638 1.9243 49 1 1.1497 3.8920 0.1395 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000951719023.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:09 Heat of formation + Delta-G solvation = 28.628245 kcal Electronic energy + Delta-G solvation = -31054.590984 eV Core-core repulsion = 26984.297096 eV Total energy + Delta-G solvation = -4070.293888 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.84339 -40.66690 -40.01115 -38.21586 -36.66659 -34.89366 -34.53754 -34.24414 -32.00142 -31.12826 -30.86600 -29.36072 -26.94630 -26.49912 -24.77391 -24.02397 -23.54989 -22.86029 -21.66105 -21.16481 -19.88603 -19.22838 -18.32438 -18.19931 -17.77875 -17.37464 -16.90389 -16.61505 -16.30972 -16.14237 -16.11456 -15.70838 -15.36483 -15.16508 -15.03335 -14.80641 -14.59500 -14.21962 -14.06631 -13.92347 -13.79987 -13.49956 -13.13715 -13.04581 -12.80716 -12.66987 -12.56024 -12.41680 -12.30313 -12.14117 -12.06187 -11.88019 -11.62491 -11.24609 -11.03522 -10.95273 -10.84768 -10.60699 -10.28106 -9.90450 -9.60630 -9.38539 -8.68591 -8.43212 -5.13465 0.05900 0.43137 1.31131 1.51675 1.65139 1.69562 2.02860 2.13198 2.64382 2.66877 2.84726 3.17982 3.42197 3.58228 3.71514 3.83624 3.85664 3.98955 4.06876 4.16210 4.23202 4.35493 4.38391 4.47135 4.50237 4.52026 4.55202 4.65854 4.69063 4.72107 4.74597 4.81961 4.88539 4.92970 4.98844 5.09090 5.11276 5.16991 5.22403 5.34289 5.37446 5.44976 5.54428 5.63370 5.92943 5.94701 6.00058 6.13451 6.51428 6.64908 6.89696 7.40391 7.57319 7.65179 8.50842 9.15627 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015388 B = 0.002941 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.157471 B = 9519.583007 C =10410.293374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.502 3.498 5 O -0.485 6.485 6 C -0.135 4.135 7 C -0.096 4.096 8 C -0.112 4.112 9 C -0.063 4.063 10 C -0.062 4.062 11 C -0.129 4.129 12 C 0.513 3.487 13 N -0.841 5.841 14 O -0.599 6.599 15 C -0.119 4.119 16 C -0.094 4.094 17 C 0.133 3.867 18 C 0.103 3.897 19 N -0.632 5.632 20 C -0.201 4.201 21 H 0.028 0.972 22 C -0.097 4.097 23 N -1.000 6.000 24 Si 1.131 2.869 25 H -0.324 1.324 26 H -0.289 1.289 27 H -0.269 1.269 28 C 0.079 3.921 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.150 0.850 35 H 0.160 0.840 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.419 0.581 41 H 0.405 0.595 42 H 0.138 0.862 43 H 0.095 0.905 44 H 0.152 0.848 45 H 0.026 0.974 46 H 0.069 0.931 47 H 0.234 0.766 48 H 0.065 0.935 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.495 -32.263 -2.773 34.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.330 5.330 4 C 0.288 3.712 5 O -0.357 6.357 6 C -0.139 4.139 7 C -0.114 4.114 8 C -0.129 4.129 9 C -0.063 4.063 10 C -0.100 4.100 11 C -0.169 4.169 12 C 0.299 3.701 13 N -0.404 5.404 14 O -0.480 6.480 15 C -0.137 4.137 16 C -0.114 4.114 17 C 0.028 3.972 18 C -0.024 4.024 19 N -0.359 5.359 20 C -0.329 4.329 21 H 0.046 0.954 22 C -0.285 4.285 23 N -0.651 5.651 24 Si 0.963 3.037 25 H -0.254 1.254 26 H -0.217 1.217 27 H -0.196 1.196 28 C -0.047 4.047 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.112 0.888 34 H 0.168 0.832 35 H 0.178 0.822 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.250 0.750 41 H 0.236 0.764 42 H 0.155 0.845 43 H 0.114 0.886 44 H 0.169 0.831 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.083 0.917 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.494 -30.089 -3.943 32.450 hybrid contribution 2.485 -0.458 0.309 2.545 sum -9.009 -30.547 -3.634 32.054 Atomic orbital electron populations 1.22354 0.94365 1.03255 1.02776 1.21904 0.95598 0.80201 1.04335 1.47644 1.63603 1.14558 1.07168 1.19410 0.79348 0.87491 0.84926 1.91435 1.40271 1.19104 1.84904 1.20135 0.96740 1.01011 0.95978 1.21831 0.96536 0.95069 0.97932 1.21292 0.99191 0.99375 0.93079 1.20106 0.93006 0.96948 0.96246 1.20288 1.03604 0.93444 0.92650 1.21650 1.06228 0.94028 0.94961 1.21094 0.74898 0.83127 0.90962 1.43799 1.70613 1.09946 1.16059 1.90755 1.49612 1.70138 1.37454 1.21094 0.99115 0.97949 0.95568 1.21105 0.97422 0.97889 0.94939 1.22504 0.96879 0.90613 0.87196 1.23030 0.96696 0.87580 0.95066 1.45662 1.02321 1.32889 1.55070 1.19446 0.87693 1.01623 1.24174 0.95424 1.26518 1.09734 0.93081 0.99161 1.71052 1.03438 1.34511 1.56084 0.82917 0.72142 0.72497 0.76167 1.25429 1.21716 1.19550 1.23277 0.87167 0.95435 0.98800 0.88740 0.91306 0.93393 0.89567 0.88767 0.83227 0.82240 0.90103 0.91410 0.86910 0.85750 0.74977 0.76445 0.84452 0.88628 0.83067 0.95539 0.91338 0.95679 0.91737 0.94673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 9.23 71.98 0.66 -1.50 16 2 C 0.10 1.78 5.61 86.38 0.48 2.26 16 3 N -0.60 -17.89 2.77 -800.02 -2.22 -20.11 16 4 C 0.50 19.93 6.75 86.79 0.59 20.52 16 5 O -0.49 -25.88 8.91 -3.88 -0.03 -25.92 16 6 C -0.14 -4.38 4.78 -20.09 -0.10 -4.47 16 7 C -0.10 -2.21 7.66 22.53 0.17 -2.04 16 8 C -0.11 -1.98 9.68 22.23 0.22 -1.77 16 9 C -0.06 -1.19 5.14 -19.81 -0.10 -1.30 16 10 C -0.06 -0.97 4.63 29.85 0.14 -0.83 16 11 C -0.13 -1.19 5.68 29.85 0.17 -1.02 16 12 C 0.51 6.96 8.10 87.66 0.71 7.67 16 13 N -0.84 -4.64 8.87 -173.54 -1.54 -6.18 16 14 O -0.60 -14.62 16.82 -3.02 -0.05 -14.67 16 15 C -0.12 -2.88 9.68 22.23 0.22 -2.67 16 16 C -0.09 -3.06 9.71 22.52 0.22 -2.84 16 17 C 0.13 4.14 4.82 45.56 0.22 4.36 16 18 C 0.10 4.02 8.21 83.18 0.68 4.70 16 19 N -0.63 -32.90 2.07 -737.96 -1.53 -34.43 16 20 C -0.20 -12.99 8.87 84.03 0.74 -12.24 16 21 H 0.03 1.97 8.05 -2.92 -0.02 1.95 16 22 C -0.10 -6.56 5.31 84.86 0.45 -6.11 16 23 N -1.00 -72.72 13.70 21.65 0.30 -72.42 16 24 Si 1.13 63.81 23.99 68.60 1.65 65.46 16 25 H -0.32 -18.90 7.11 99.48 0.71 -18.19 16 26 H -0.29 -15.80 6.02 99.48 0.60 -15.20 16 27 H -0.27 -13.48 6.65 99.48 0.66 -12.82 16 28 C 0.08 3.34 4.94 83.27 0.41 3.75 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.05 0.79 6.01 -2.39 -0.01 0.78 16 32 H 0.09 1.49 5.57 -2.39 -0.01 1.48 16 33 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.15 2.95 4.26 -2.91 -0.01 2.93 16 35 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 36 H 0.08 1.30 8.04 -2.39 -0.02 1.28 16 37 H 0.07 1.27 8.04 -2.39 -0.02 1.25 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.42 -0.51 8.83 -92.71 -0.82 -1.33 16 41 H 0.40 1.98 8.93 -92.71 -0.83 1.15 16 42 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 43 H 0.10 3.63 8.06 -2.91 -0.02 3.61 16 44 H 0.15 3.01 8.10 -2.39 -0.02 2.99 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 47 H 0.23 17.16 8.73 -92.71 -0.81 16.35 16 48 H 0.07 2.51 8.04 -2.39 -0.02 2.49 16 49 H 0.04 1.66 3.67 -2.39 -0.01 1.65 16 Total: -1.00 -101.23 383.16 1.61 -99.61 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -0.84 Total: 2.16 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: 5.89 Total: 6.49 kcal Atomic # 7 Polarization: -128.15 SS G_CDS: -4.99 Total: -133.14 kcal Atomic # 8 Polarization: -40.50 SS G_CDS: -0.09 Total: -40.58 kcal Atomic # 14 Polarization: 63.81 SS G_CDS: 1.65 Total: 65.46 kcal Total: -101.23 1.61 -99.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000951719023.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.241 kcal (2) G-P(sol) polarization free energy of solvation -101.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds