Wall clock time and date at job start Wed Apr 1 2020 03:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46498 * 109.46950 * 2 1 4 4 C 1.34780 * 120.00056 * 98.30100 * 3 2 1 5 5 O 1.21507 * 119.99809 * 186.34567 * 4 3 2 6 6 C 1.48160 * 119.99899 * 6.34683 * 4 3 2 7 7 C 1.39962 * 120.89218 * 331.13483 * 6 4 3 8 8 C 1.37985 * 119.13443 * 180.02562 * 7 6 4 9 9 N 1.31904 * 120.97819 * 359.72433 * 8 7 6 10 10 C 1.32174 * 121.97023 * 0.56963 * 9 8 7 11 11 O 1.35681 * 119.62751 * 179.70831 * 10 9 8 12 12 C 1.42904 * 116.99808 * 359.72419 * 11 10 9 13 13 C 1.53780 * 113.61457 * 247.49964 * 12 11 10 14 14 C 1.53782 * 87.08034 * 220.01629 * 13 12 11 15 15 C 1.53779 * 113.61421 * 149.99851 * 12 11 10 16 16 C 1.38897 * 120.75097 * 359.43100 * 10 9 8 17 17 C 1.46503 * 120.00177 * 278.30063 * 3 2 1 18 18 C 1.53939 * 113.74075 * 222.90483 * 17 3 2 19 19 N 1.47810 * 86.03526 * 222.08290 * 18 17 3 20 20 C 1.36944 * 134.45470 * 204.64948 * 19 18 17 21 21 H 1.08003 * 119.99338 * 184.82535 * 20 19 18 22 22 C 1.38808 * 120.00292 * 4.81749 * 20 19 18 23 23 N 1.31616 * 119.99680 * 5.06335 * 22 20 19 24 24 Si 1.86797 * 119.99918 * 185.06765 * 22 20 19 25 25 H 1.48505 * 109.47379 * 94.99813 * 24 22 20 26 26 H 1.48499 * 109.46963 * 214.99674 * 24 22 20 27 27 H 1.48494 * 109.47201 * 334.99688 * 24 22 20 28 28 C 1.47576 * 91.05331 * 24.55006 * 19 18 17 29 29 H 1.09001 * 109.47141 * 299.99893 * 1 2 3 30 30 H 1.08998 * 109.47544 * 59.99810 * 1 2 3 31 31 H 1.09001 * 109.47298 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47141 * 240.00107 * 2 1 3 33 33 H 1.08994 * 109.47100 * 120.00044 * 2 1 3 34 34 H 1.08002 * 120.43609 * 0.02562 * 7 6 4 35 35 H 1.08004 * 119.51086 * 180.02562 * 8 7 6 36 36 H 1.09004 * 112.84721 * 18.80439 * 12 11 10 37 37 H 1.08997 * 113.61576 * 334.56712 * 13 12 11 38 38 H 1.08998 * 113.61310 * 105.46893 * 13 12 11 39 39 H 1.09000 * 113.61460 * 270.88425 * 14 13 12 40 40 H 1.09000 * 113.61276 * 139.98109 * 14 13 12 41 41 H 1.09002 * 113.61708 * 254.52861 * 15 12 11 42 42 H 1.08995 * 113.61489 * 25.35279 * 15 12 11 43 43 H 1.07998 * 120.52568 * 180.25902 * 16 10 9 44 44 H 1.09000 * 112.94160 * 354.49321 * 17 3 2 45 45 H 1.09002 * 113.77111 * 336.34294 * 18 17 3 46 46 H 1.09002 * 113.77336 * 107.74274 * 18 17 3 47 47 H 0.97002 * 119.99571 * 179.97438 * 23 22 20 48 48 H 1.09005 * 113.77065 * 221.15833 * 28 19 18 49 49 H 1.09000 * 113.77196 * 89.75346 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4018 1.9604 1.1550 5 8 2.6968 3.1390 1.1749 6 6 2.4636 1.1601 2.4003 7 6 1.6215 0.0581 2.5888 8 6 1.7094 -0.6615 3.7628 9 7 2.5755 -0.3281 4.7002 10 6 3.3860 0.7075 4.5679 11 8 4.2546 1.0112 5.5650 12 6 4.2310 0.1744 6.7232 13 6 3.7190 0.8857 7.9868 14 6 4.8178 0.1361 8.7586 15 6 5.5915 0.0644 7.4315 16 6 3.3626 1.4851 3.4172 17 6 2.0897 2.1329 -1.2554 18 6 3.3831 2.9525 -1.4143 19 7 2.5158 4.0271 -1.9412 20 6 2.7121 5.0962 -2.7743 21 1 1.9103 5.7981 -2.9499 22 6 3.9414 5.2777 -3.3928 23 7 4.8858 4.3708 -3.2586 24 14 4.2554 6.8091 -4.4153 25 1 4.9246 7.8358 -3.5765 26 1 5.1279 6.4652 -5.5667 27 1 2.9636 7.3438 -4.9155 28 6 1.3536 3.4843 -1.2115 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.9122 -0.2254 1.8253 35 1 1.0629 -1.5132 3.9145 36 1 3.7551 -0.7890 6.5397 37 1 3.8593 1.9665 7.9667 38 1 2.7084 0.5944 8.2727 39 1 4.5017 -0.8376 9.1329 40 1 5.3095 0.7435 9.5185 41 1 6.0925 -0.8899 7.2692 42 1 6.2443 0.9200 7.2584 43 1 4.0294 2.3280 3.3111 44 1 1.8439 1.5274 -2.1278 45 1 3.8649 3.2008 -0.4686 46 1 4.0747 2.5435 -2.1510 47 1 5.7447 4.4975 -3.6912 48 1 0.4277 3.4990 -1.7866 49 1 1.2379 3.8890 -0.2061 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000957053580.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:09:18 Heat of formation + Delta-G solvation = 90.348818 kcal Electronic energy + Delta-G solvation = -30405.853643 eV Core-core repulsion = 26338.236161 eV Total energy + Delta-G solvation = -4067.617483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.21779 -40.15387 -39.00883 -37.00119 -36.59691 -35.69957 -32.70410 -31.94459 -30.80286 -30.09687 -27.49778 -26.03073 -25.92271 -24.73460 -24.66606 -23.69587 -23.12479 -22.71839 -20.55648 -19.89145 -19.40268 -17.97762 -17.18368 -16.82652 -16.71174 -16.28963 -15.79511 -15.47152 -15.38527 -15.16755 -14.65501 -14.58400 -14.44230 -13.95782 -13.74836 -13.42747 -13.32468 -12.91851 -12.80829 -12.69446 -12.43806 -12.32884 -11.87064 -11.78552 -11.66921 -11.62282 -11.44354 -11.29207 -11.10930 -10.82073 -10.80070 -10.61806 -10.52350 -10.17927 -10.00486 -9.92377 -9.87718 -9.47606 -9.28040 -8.63946 -8.60989 -8.15592 -6.73117 -5.67456 -2.99811 0.69453 0.96925 2.71300 2.99010 3.21833 3.44936 3.50026 3.51466 3.66832 4.04609 4.21082 4.22678 4.36135 4.49729 4.54894 4.57434 4.72362 4.81673 4.91819 5.01197 5.08393 5.23390 5.29333 5.32595 5.33410 5.40420 5.49757 5.53011 5.55381 5.57816 5.58744 5.65187 5.66910 5.72888 5.74423 5.85465 5.89985 5.97108 6.13321 6.22656 6.36851 6.59978 6.62775 6.94520 7.10715 7.36981 7.58224 7.61704 7.63208 7.70810 8.07158 8.42187 9.12707 9.79427 10.70015 11.48484 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014586 B = 0.002484 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1919.128035 B =11271.699514 C =12720.796675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.068 3.932 3 N -0.590 5.590 4 C 0.549 3.451 5 O -0.497 6.497 6 C -0.040 4.040 7 C -0.216 4.216 8 C 0.133 3.867 9 N -0.534 5.534 10 C 0.321 3.679 11 O -0.291 6.291 12 C 0.061 3.939 13 C -0.152 4.152 14 C -0.139 4.139 15 C -0.138 4.138 16 C -0.137 4.137 17 C 0.091 3.909 18 C 0.148 3.852 19 N -0.603 5.603 20 C -0.215 4.215 21 H 0.079 0.921 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.912 3.088 25 H -0.290 1.290 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.112 3.888 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.173 0.827 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.152 0.848 44 H 0.107 0.893 45 H 0.049 0.951 46 H 0.076 0.924 47 H 0.252 0.748 48 H 0.037 0.963 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 -17.299 19.568 26.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.055 4.055 3 N -0.323 5.323 4 C 0.335 3.665 5 O -0.372 6.372 6 C -0.050 4.050 7 C -0.236 4.236 8 C -0.022 4.022 9 N -0.258 5.258 10 C 0.142 3.858 11 O -0.198 6.198 12 C 0.004 3.996 13 C -0.190 4.190 14 C -0.176 4.176 15 C -0.175 4.175 16 C -0.159 4.159 17 C -0.012 4.012 18 C 0.022 3.978 19 N -0.329 5.329 20 C -0.343 4.343 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.567 5.567 24 Si 0.743 3.257 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.206 1.206 28 C -0.015 4.015 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.189 0.811 35 H 0.181 0.819 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.111 0.889 43 H 0.170 0.830 44 H 0.124 0.876 45 H 0.066 0.934 46 H 0.094 0.906 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.556 -16.704 20.093 26.714 hybrid contribution 0.063 1.132 -1.175 1.633 sum -5.493 -15.572 18.918 25.111 Atomic orbital electron populations 1.22297 0.95832 1.02296 1.03255 1.22457 0.94539 0.83863 1.04676 1.48015 1.63194 1.13534 1.07531 1.18080 0.78663 0.87019 0.82744 1.90883 1.46753 1.14819 1.84727 1.20322 0.95209 0.94761 0.94746 1.23208 1.03172 0.96728 1.00497 1.22369 0.93722 0.98174 0.87931 1.67032 1.08109 1.17162 1.33541 1.19619 0.88608 0.89820 0.87761 1.86380 1.54016 1.53499 1.25892 1.24180 0.98341 0.95475 0.81571 1.23451 0.99377 1.01079 0.95105 1.22627 0.97557 1.01113 0.96345 1.23277 0.96172 1.03283 0.94777 1.21148 1.01725 1.01818 0.91195 1.24153 1.02186 0.91460 0.83366 1.22812 0.91801 0.85569 0.97596 1.45612 1.05479 1.30851 1.50968 1.18993 0.97666 1.00375 1.17264 0.90356 1.24774 0.96381 0.98741 1.00743 1.69825 1.04992 1.34074 1.47768 0.86094 0.77717 0.82537 0.79400 1.21702 1.21752 1.20598 1.22961 0.91888 0.90379 0.96253 0.91971 0.91279 0.91297 0.90315 0.87842 0.81065 0.81941 0.86531 0.89150 0.90852 0.89722 0.90426 0.90611 0.88912 0.83038 0.87554 0.93377 0.90567 0.93779 0.94525 0.93090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 9.12 37.16 0.34 -1.18 16 2 C 0.07 0.71 5.59 -4.04 -0.02 0.69 16 3 N -0.59 -9.24 2.74 -168.91 -0.46 -9.70 16 4 C 0.55 9.54 6.92 -12.18 -0.08 9.46 16 5 O -0.50 -10.97 12.50 5.36 0.07 -10.91 16 6 C -0.04 -0.55 5.62 -104.68 -0.59 -1.14 16 7 C -0.22 -2.22 7.60 -39.03 -0.30 -2.52 16 8 C 0.13 1.25 11.17 -17.61 -0.20 1.05 16 9 N -0.53 -6.20 8.56 -13.38 -0.11 -6.32 16 10 C 0.32 4.24 7.49 -17.16 -0.13 4.11 16 11 O -0.29 -3.70 10.13 -18.75 -0.19 -3.89 16 12 C 0.06 0.59 4.18 -25.92 -0.11 0.48 16 13 C -0.15 -1.25 7.91 -25.92 -0.21 -1.46 16 14 C -0.14 -0.89 8.08 -25.91 -0.21 -1.10 16 15 C -0.14 -1.07 7.91 -25.92 -0.21 -1.27 16 16 C -0.14 -1.98 9.63 -38.84 -0.37 -2.36 16 17 C 0.09 1.77 4.59 -70.16 -0.32 1.45 16 18 C 0.15 3.73 6.99 -2.84 -0.02 3.71 16 19 N -0.60 -16.50 3.70 -177.91 -0.66 -17.15 16 20 C -0.22 -6.35 10.69 -15.06 -0.16 -6.51 16 21 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 22 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 23 N -0.92 -28.27 11.29 55.49 0.63 -27.64 16 24 Si 0.91 23.00 29.56 -169.99 -5.02 17.97 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 28 C 0.11 2.50 8.27 -2.97 -0.02 2.47 16 29 H 0.06 0.54 7.13 -51.93 -0.37 0.17 16 30 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.77 8.13 -51.93 -0.42 0.34 16 33 H 0.10 0.94 3.98 -51.98 -0.21 0.73 16 34 H 0.17 1.40 2.68 -52.49 -0.14 1.26 16 35 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 1.13 6.87 -51.93 -0.36 0.77 16 37 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.15 2.32 7.98 -52.49 -0.42 1.90 16 44 H 0.11 1.90 8.07 -51.93 -0.42 1.48 16 45 H 0.05 1.32 5.76 -51.93 -0.30 1.02 16 46 H 0.08 2.09 6.87 -51.93 -0.36 1.73 16 47 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 1.20 6.25 -51.93 -0.32 0.88 16 LS Contribution 388.24 15.07 5.85 5.85 Total: -1.00 -35.60 388.24 -9.70 -45.30 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -7.09 Total: 1.00 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -2.70 Total: 5.49 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.61 Total: -60.81 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -0.12 Total: -14.80 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.97 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.60 -9.70 -45.30 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000957053580.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.645 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds